Wall clock time and date at job start Tue Mar 31 2020 21:59:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30747 * 1
3 3 Si 1.86800 * 119.99971 * 2 1
4 4 H 1.48510 * 109.46875 * 239.99607 * 3 2 1
5 5 H 1.48502 * 109.47366 * 359.97438 * 3 2 1
6 6 H 1.48497 * 109.47523 * 120.00035 * 3 2 1
7 7 C 1.40019 * 119.99761 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99900 * 196.99310 * 7 2 1
9 9 C 1.41553 * 120.00095 * 16.99253 * 7 2 1
10 10 C 1.41193 * 120.99167 * 203.28441 * 9 7 2
11 11 C 1.36554 * 119.14524 * 180.02562 * 10 9 7
12 12 N 1.32105 * 121.26662 * 359.97438 * 11 10 9
13 13 C 1.32529 * 122.21599 * 0.02562 * 12 11 10
14 14 N 1.39084 * 119.65063 * 179.97438 * 13 12 11
15 15 C 1.46948 * 111.00339 * 0.02562 * 14 13 12
16 16 C 1.53057 * 109.36595 * 183.18700 * 15 14 13
17 17 N 1.46957 * 109.36182 * 301.60257 * 16 15 14
18 18 C 1.46902 * 110.99883 * 183.19120 * 17 16 15
19 19 C 1.52999 * 109.47249 * 169.99699 * 18 17 16
20 20 C 1.50706 * 109.46913 * 179.97438 * 19 18 17
21 21 C 1.38652 * 120.78907 * 270.29781 * 20 19 18
22 22 C 1.38205 * 119.15508 * 180.22613 * 21 20 19
23 23 N 1.31866 * 120.76918 * 359.47291 * 22 21 20
24 24 C 1.31872 * 121.72340 * 0.27582 * 23 22 21
25 25 C 1.38203 * 120.76673 * 359.97438 * 24 23 22
26 26 C 1.46948 * 110.88408 * 59.31813 * 17 16 15
27 27 C 1.46957 * 110.99499 * 123.80408 * 14 13 12
28 28 C 1.38740 * 120.68758 * 0.25381 * 13 12 11
29 29 H 0.96999 * 119.99735 * 0.02562 * 1 2 3
30 30 H 1.07999 * 120.42780 * 0.04559 * 10 9 7
31 31 H 1.08001 * 119.36965 * 179.97438 * 11 10 9
32 32 H 1.09004 * 109.49342 * 63.22075 * 15 14 13
33 33 H 1.08997 * 109.49025 * 303.15456 * 15 14 13
34 34 H 1.09002 * 109.49009 * 181.63235 * 16 15 14
35 35 H 1.08993 * 109.48701 * 61.56474 * 16 15 14
36 36 H 1.08999 * 109.47108 * 49.99010 * 18 17 16
37 37 H 1.09011 * 109.46560 * 289.99515 * 18 17 16
38 38 H 1.09000 * 109.46886 * 59.99646 * 19 18 17
39 39 H 1.08995 * 109.46862 * 299.99627 * 19 18 17
40 40 H 1.07997 * 120.41944 * 0.02562 * 21 20 19
41 41 H 1.08006 * 119.61254 * 179.75545 * 22 21 20
42 42 H 1.08004 * 119.61494 * 180.02562 * 24 23 22
43 43 H 1.08001 * 120.42178 * 180.02562 * 25 24 23
44 44 H 1.08996 * 109.49239 * 60.64238 * 26 17 16
45 45 H 1.09006 * 109.49142 * 180.71414 * 26 17 16
46 46 H 1.09006 * 109.48774 * 296.77555 * 27 14 13
47 47 H 1.08994 * 109.49620 * 56.81757 * 27 14 13
48 48 H 1.08001 * 120.66753 * 179.72043 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3075 0.0000 0.0000
3 14 2.2415 1.6177 0.0000
4 1 3.0953 1.6963 -1.2125
5 1 1.2765 2.7465 -0.0006
6 1 3.0952 1.6965 1.2124
7 6 2.0075 -1.2126 0.0005
8 1 3.0522 -1.2330 0.2739
9 6 1.3461 -2.4119 -0.3572
10 6 1.8271 -3.6655 0.0794
11 6 1.1598 -4.7987 -0.2885
12 7 0.0763 -4.7422 -1.0422
13 6 -0.4202 -3.5944 -1.4808
14 7 -1.5641 -3.5971 -2.2720
15 6 -2.0484 -4.9668 -2.4930
16 6 -3.2578 -4.9324 -3.4305
17 7 -4.3095 -4.0940 -2.8384
18 6 -5.5177 -4.0968 -3.6740
19 6 -6.6646 -3.4268 -2.9147
20 6 -7.9039 -3.4292 -3.7722
21 6 -8.1706 -2.3787 -4.6370
22 6 -9.3195 -2.4135 -5.4044
23 7 -10.1509 -3.4341 -5.3283
24 6 -9.9267 -4.4525 -4.5210
25 6 -8.8012 -4.4849 -3.7197
26 6 -3.8252 -2.7243 -2.6174
27 6 -2.6160 -2.7592 -1.6796
28 6 0.1924 -2.3907 -1.1636
29 1 -0.4850 0.8401 -0.0004
30 1 2.7111 -3.7274 0.6966
31 1 1.5247 -5.7596 0.0431
32 1 -2.3398 -5.4078 -1.5397
33 1 -1.2560 -5.5645 -2.9435
34 1 -3.6365 -5.9446 -3.5728
35 1 -2.9600 -4.5165 -4.3930
36 1 -5.7916 -5.1243 -3.9133
37 1 -5.3231 -3.5486 -4.5959
38 1 -6.3906 -2.3993 -2.6754
39 1 -6.8591 -3.9750 -1.9929
40 1 -7.4908 -1.5425 -4.7076
41 1 -9.5365 -1.5972 -6.0775
42 1 -10.6305 -5.2710 -4.4862
43 1 -8.6229 -5.3219 -3.0608
44 1 -3.5338 -2.2833 -3.5706
45 1 -4.6176 -2.1266 -2.1669
46 1 -2.9137 -3.1755 -0.7172
47 1 -2.2375 -1.7471 -1.5366
48 1 -0.2100 -1.4558 -1.5249
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001165059988.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:59:39
Heat of formation + Delta-G solvation = 62.012542 kcal
Electronic energy + Delta-G solvation = -28149.080805 eV
Core-core repulsion = 24395.720761 eV
Total energy + Delta-G solvation = -3753.360044 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.180 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.25248 -40.98004 -39.52230 -37.04199 -35.89357 -34.76326 -32.62051 -32.08382
-31.96558 -31.30274 -29.68275 -27.95378 -26.92321 -24.95130 -24.34327 -24.10003
-23.14981 -22.51622 -21.90727 -20.81042 -19.45480 -17.82674 -17.58754 -17.34767
-17.09678 -16.50841 -16.47176 -16.23393 -16.05878 -16.03101 -15.71679 -15.38162
-15.03388 -14.85647 -14.60752 -14.56920 -14.36979 -14.21335 -13.75844 -13.47184
-13.23428 -13.11039 -12.96576 -12.87020 -12.64683 -12.62334 -12.27503 -12.18205
-12.00546 -11.93952 -11.74381 -11.57533 -11.23826 -10.57155 -10.45072 -10.39416
-10.05223 -9.97476 -9.85841 -9.35958 -8.80926 -8.59982 -6.55743 0.24062
0.30859 0.87642 1.00726 1.38579 1.49652 1.56741 2.18014 2.64746
2.76611 2.94197 2.96098 3.62661 3.69362 3.75098 3.82628 3.88319
4.00311 4.03586 4.16871 4.21827 4.26279 4.29578 4.33394 4.40424
4.46749 4.59770 4.61872 4.73152 4.74920 4.80079 4.85691 4.91020
4.93155 4.95221 4.98082 5.04316 5.08798 5.11492 5.19175 5.24524
5.29673 5.48235 5.55107 5.80176 5.82690 5.92576 5.97119 6.06414
6.10182 6.34968 6.70140 6.82733 6.86536 7.06334 7.70505 8.24813
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.015664 B = 0.002286 C = 0.002036
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1787.154896 B =12246.978317 C =13745.895130
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.807 5.807
2 C 0.040 3.960
3 Si 0.985 3.015
4 H -0.262 1.262
5 H -0.265 1.265
6 H -0.258 1.258
7 C -0.486 4.486
8 H 0.082 0.918
9 C 0.107 3.893
10 C -0.301 4.301
11 C 0.115 3.885
12 N -0.610 5.610
13 C 0.289 3.711
14 N -0.484 5.484
15 C 0.082 3.918
16 C 0.066 3.934
17 N -0.545 5.545
18 C 0.070 3.930
19 C -0.074 4.074
20 C -0.040 4.040
21 C -0.175 4.175
22 C 0.086 3.914
23 N -0.520 5.520
24 C 0.087 3.913
25 C -0.170 4.170
26 C 0.068 3.932
27 C 0.073 3.927
28 C -0.247 4.247
29 H 0.292 0.708
30 H 0.112 0.888
31 H 0.154 0.846
32 H 0.032 0.968
33 H 0.073 0.927
34 H 0.102 0.898
35 H 0.039 0.961
36 H 0.085 0.915
37 H 0.036 0.964
38 H 0.080 0.920
39 H 0.087 0.913
40 H 0.147 0.853
41 H 0.172 0.828
42 H 0.174 0.826
43 H 0.153 0.847
44 H 0.042 0.958
45 H 0.102 0.898
46 H 0.025 0.975
47 H 0.073 0.927
48 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.028 -3.245 -7.586 18.027
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.432 5.432
2 C -0.178 4.178
3 Si 0.805 3.195
4 H -0.186 1.186
5 H -0.189 1.189
6 H -0.182 1.182
7 C -0.516 4.516
8 H 0.100 0.900
9 C 0.099 3.901
10 C -0.325 4.325
11 C -0.038 4.038
12 N -0.331 5.331
13 C 0.063 3.937
14 N -0.203 5.203
15 C -0.046 4.046
16 C -0.062 4.062
17 N -0.270 5.270
18 C -0.058 4.058
19 C -0.112 4.112
20 C -0.049 4.049
21 C -0.194 4.194
22 C -0.070 4.070
23 N -0.230 5.230
24 C -0.069 4.069
25 C -0.190 4.190
26 C -0.060 4.060
27 C -0.054 4.054
28 C -0.272 4.272
29 H 0.103 0.897
30 H 0.130 0.870
31 H 0.171 0.829
32 H 0.050 0.950
33 H 0.091 0.909
34 H 0.120 0.880
35 H 0.058 0.942
36 H 0.104 0.896
37 H 0.055 0.945
38 H 0.099 0.901
39 H 0.106 0.894
40 H 0.165 0.835
41 H 0.189 0.811
42 H 0.191 0.809
43 H 0.170 0.830
44 H 0.060 0.940
45 H 0.120 0.880
46 H 0.043 0.957
47 H 0.091 0.909
48 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -17.482 -3.895 -8.354 19.763
hybrid contribution 1.938 1.487 0.939 2.617
sum -15.544 -2.407 -7.416 17.390
Atomic orbital electron populations
1.69812 1.09032 1.31000 1.33335 1.26811 0.95579 1.04561 0.90878
0.85208 0.78841 0.75351 0.80085 1.18626 1.18866 1.18232 1.19850
0.98230 0.91879 1.41647 0.89985 1.18134 0.90940 0.93439 0.87603
1.21781 1.06069 0.93901 1.10732 1.21886 0.90794 0.97879 0.93240
1.67316 1.17485 1.28290 1.20003 1.19685 0.92841 0.89866 0.91282
1.59475 1.04061 1.13441 1.43362 1.21831 0.96172 0.87885 0.98690
1.22188 0.90150 0.98711 0.95179 1.62147 1.05691 1.10686 1.48501
1.22011 0.88554 1.01608 0.93614 1.20587 0.90280 1.02571 0.97732
1.20420 0.95721 0.93757 0.95016 1.22304 0.99327 1.00255 0.97563
1.23108 0.90332 0.96260 0.97274 1.67691 1.32123 1.02477 1.20702
1.23159 0.96245 0.96262 0.91257 1.22324 0.95363 0.99866 1.01449
1.22149 0.95364 0.90269 0.98182 1.22157 0.90364 0.97139 0.95722
1.21559 1.02370 0.96521 1.06759 0.89721 0.87024 0.82900 0.94953
0.90896 0.87985 0.94241 0.89637 0.94524 0.90143 0.89422 0.83489
0.81138 0.80883 0.82950 0.93976 0.87968 0.95692 0.90862 0.86682
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -40.17 10.91 21.84 0.24 -39.93 16
2 C 0.04 1.92 5.20 85.29 0.44 2.36 16
3 Si 0.98 36.56 29.59 68.60 2.03 38.59 16
4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16
5 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16
6 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16
7 C -0.49 -25.61 9.12 23.52 0.21 -25.39 16
8 H 0.08 4.13 7.90 -2.91 -0.02 4.11 16
9 C 0.11 5.82 5.61 -21.12 -0.12 5.70 16
10 C -0.30 -14.88 9.85 22.60 0.22 -14.66 16
11 C 0.12 5.29 11.10 84.26 0.94 6.23 16
12 N -0.61 -29.36 8.68 -194.47 -1.69 -31.05 16
13 C 0.29 14.16 6.40 132.90 0.85 15.02 16
14 N -0.48 -19.92 4.73 -701.57 -3.32 -23.24 16
15 C 0.08 2.88 4.78 86.31 0.41 3.29 16
16 C 0.07 1.72 5.61 86.31 0.48 2.20 16
17 N -0.55 -13.25 4.71 -895.69 -4.22 -17.47 16
18 C 0.07 1.25 4.94 86.30 0.43 1.68 16
19 C -0.07 -1.16 5.33 29.85 0.16 -1.00 16
20 C -0.04 -0.63 5.17 -19.66 -0.10 -0.73 16
21 C -0.17 -2.68 9.82 22.36 0.22 -2.46 16
22 C 0.09 1.42 11.18 84.68 0.95 2.37 16
23 N -0.52 -10.17 10.36 -195.84 -2.03 -12.19 16
24 C 0.09 1.38 11.18 84.68 0.95 2.32 16
25 C -0.17 -2.46 9.82 22.36 0.22 -2.24 16
26 C 0.07 1.85 5.41 86.31 0.47 2.32 16
27 C 0.07 2.71 5.37 86.31 0.46 3.17 16
28 C -0.25 -13.16 7.90 23.01 0.18 -12.98 16
29 H 0.29 13.02 8.29 -92.71 -0.77 12.25 16
30 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16
31 H 0.15 5.80 8.06 -2.91 -0.02 5.78 16
32 H 0.03 1.24 8.05 -2.38 -0.02 1.22 16
33 H 0.07 2.69 7.82 -2.39 -0.02 2.67 16
34 H 0.10 2.17 8.07 -2.39 -0.02 2.15 16
35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16
36 H 0.09 1.39 8.03 -2.39 -0.02 1.37 16
37 H 0.04 0.67 8.12 -2.38 -0.02 0.65 16
38 H 0.08 1.26 6.46 -2.39 -0.02 1.24 16
39 H 0.09 1.39 8.10 -2.39 -0.02 1.38 16
40 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16
41 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16
42 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16
43 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16
44 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16
45 H 0.10 2.31 6.34 -2.38 -0.02 2.29 16
46 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16
47 H 0.07 3.01 6.80 -2.39 -0.02 3.00 16
48 H 0.12 6.33 5.32 -2.91 -0.02 6.31 16
Total: -1.00 -63.78 386.18 -0.66 -64.44
By element:
Atomic # 1 Polarization: 32.73 SS G_CDS: 0.95 Total: 33.68 kcal
Atomic # 6 Polarization: -20.19 SS G_CDS: 7.37 Total: -12.82 kcal
Atomic # 7 Polarization: -112.87 SS G_CDS: -11.02 Total: -123.89 kcal
Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal
Total: -63.78 -0.66 -64.44 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001165059988.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 126.453 kcal
(2) G-P(sol) polarization free energy of solvation -63.780 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.673 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.661 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.013 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds