Wall clock time and date at job start Tue Mar 31 2020 21:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 120.00217 * 2 1 4 4 H 1.48497 * 109.47306 * 239.99627 * 3 2 1 5 5 H 1.48502 * 109.47024 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47137 * 119.99508 * 3 2 1 7 7 C 1.39937 * 119.99598 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99509 * 169.22477 * 7 2 1 9 9 C 1.41419 * 120.00333 * 349.22529 * 7 2 1 10 10 C 1.40803 * 120.62255 * 151.67522 * 9 7 2 11 11 N 1.31466 * 120.56007 * 179.97438 * 10 9 7 12 12 C 1.32022 * 122.05987 * 359.70043 * 11 10 9 13 13 C 1.39287 * 121.20596 * 0.59126 * 12 11 10 14 14 N 1.39722 * 120.36148 * 179.69601 * 13 12 11 15 15 C 1.46507 * 119.99886 * 359.72545 * 14 13 12 16 16 C 1.50700 * 109.46976 * 179.97438 * 15 14 13 17 17 C 1.38123 * 120.03740 * 257.04865 * 16 15 14 18 18 C 1.38265 * 120.07744 * 180.02562 * 17 16 15 19 19 C 1.38310 * 120.14452 * 359.97438 * 18 17 16 20 20 C 1.38078 * 120.07819 * 359.74450 * 19 18 17 21 21 C 1.38888 * 120.03771 * 77.07644 * 16 15 14 22 22 N 1.39670 * 120.07501 * 359.94703 * 21 16 15 23 23 C 1.46959 * 111.00403 * 244.57679 * 22 21 16 24 24 C 1.53053 * 109.36594 * 176.81367 * 23 22 21 25 25 N 1.46953 * 109.36354 * 58.39937 * 24 23 22 26 26 C 1.46951 * 110.88334 * 300.67956 * 25 24 23 27 27 C 1.46962 * 110.99998 * 120.77549 * 22 21 16 28 28 C 1.38693 * 119.27874 * 359.42557 * 13 12 11 29 29 H 0.96995 * 119.99863 * 0.02562 * 1 2 3 30 30 H 1.07993 * 119.71704 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.39455 * 180.28859 * 12 11 10 32 32 H 0.96994 * 120.00239 * 179.72516 * 14 13 12 33 33 H 1.08994 * 109.46702 * 60.00177 * 15 14 13 34 34 H 1.09003 * 109.46908 * 300.00222 * 15 14 13 35 35 H 1.07998 * 119.96446 * 0.02810 * 17 16 15 36 36 H 1.07999 * 119.92723 * 179.97438 * 18 17 16 37 37 H 1.08004 * 119.95673 * 180.02562 * 19 18 17 38 38 H 1.08002 * 120.03838 * 180.27328 * 20 19 18 39 39 H 1.08997 * 109.48556 * 56.84516 * 23 22 21 40 40 H 1.09000 * 109.50374 * 296.79113 * 23 22 21 41 41 H 1.09007 * 109.48684 * 298.43566 * 24 23 22 42 42 H 1.09001 * 109.49031 * 178.36706 * 24 23 22 43 43 H 1.00896 * 110.99930 * 64.55149 * 25 24 23 44 44 H 1.09003 * 109.49381 * 179.28855 * 26 25 24 45 45 H 1.09001 * 109.49017 * 299.35468 * 26 25 24 46 46 H 1.09001 * 109.48706 * 303.15928 * 27 22 21 47 47 H 1.09003 * 109.48329 * 63.20303 * 27 22 21 48 48 H 1.08001 * 120.93135 * 180.25054 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0737 -1.2202 -0.1743 9 6 1.3195 -2.4258 0.2300 10 6 1.7928 -3.6334 -0.3178 11 7 1.1521 -4.7612 -0.1032 12 6 0.0551 -4.8155 0.6293 13 6 -0.4863 -3.6682 1.2042 14 7 -1.6517 -3.7451 1.9711 15 6 -2.3144 -5.0367 2.1691 16 6 -3.5387 -4.8468 3.0271 17 6 -3.5105 -5.2047 4.3609 18 6 -4.6334 -5.0314 5.1487 19 6 -5.7881 -4.4987 4.6047 20 6 -5.8213 -4.1334 3.2735 21 6 -4.6967 -4.3122 2.4775 22 7 -4.7285 -3.9486 1.1293 23 6 -4.9157 -2.4988 0.9790 24 6 -4.8654 -2.1318 -0.5060 25 7 -5.9103 -2.8724 -1.2266 26 6 -5.7231 -4.3222 -1.0763 27 6 -5.7735 -4.6892 0.4086 28 6 0.1471 -2.4494 1.0119 29 1 -0.4850 0.8400 -0.0004 30 1 2.6902 -3.6333 -0.9186 31 1 -0.4341 -5.7663 0.7815 32 1 -2.0221 -2.9435 2.3724 33 1 -1.6284 -5.7250 2.6627 34 1 -2.6076 -5.4466 1.2026 35 1 -2.6104 -5.6205 4.7889 36 1 -4.6089 -5.3125 6.1912 37 1 -6.6634 -4.3642 5.2230 38 1 -6.7219 -3.7134 2.8505 39 1 -4.1228 -1.9727 1.5106 40 1 -5.8828 -2.2119 1.3919 41 1 -3.8883 -2.3935 -0.9124 42 1 -5.0329 -1.0610 -0.6220 43 1 -6.8295 -2.5926 -0.9186 44 1 -6.5160 -4.8483 -1.6080 45 1 -4.7559 -4.6087 -1.4891 46 1 -5.6059 -5.7600 0.5246 47 1 -6.7505 -4.4278 0.8153 48 1 -0.2473 -1.5438 1.4487 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171286605.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:58 Heat of formation + Delta-G solvation = 53.275954 kcal Electronic energy + Delta-G solvation = -29473.951069 eV Core-core repulsion = 25720.212179 eV Total energy + Delta-G solvation = -3753.738891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.48161 -40.19092 -39.19375 -36.75874 -35.72965 -35.35609 -32.97957 -32.06748 -31.98071 -30.63419 -29.63303 -27.51276 -26.63456 -25.89409 -24.41855 -23.81001 -23.35267 -22.49672 -21.76134 -21.29062 -19.08702 -18.45264 -17.77076 -17.21644 -16.91170 -16.71367 -16.53358 -16.28090 -16.02744 -15.91173 -15.58159 -15.31199 -15.13665 -14.95337 -14.67752 -14.64685 -13.89463 -13.83700 -13.70811 -13.56048 -13.42044 -13.19455 -13.09250 -13.04154 -12.67698 -12.57804 -12.36187 -12.19134 -12.15904 -12.06211 -12.04162 -11.73788 -11.15328 -11.06385 -9.97240 -9.87603 -9.67595 -9.62774 -9.58093 -9.30216 -8.59817 -8.01412 -6.41248 0.25640 0.33488 0.98952 1.26146 1.40847 1.51813 1.57416 2.23118 2.56758 2.68768 2.83943 3.07641 3.26939 3.76298 3.83050 3.88745 3.96537 4.02555 4.06614 4.10683 4.14347 4.29303 4.31724 4.37746 4.41681 4.58358 4.61194 4.65074 4.70406 4.73848 4.75946 4.83727 4.89943 5.00249 5.01495 5.04762 5.11662 5.23378 5.34801 5.42365 5.50019 5.56909 5.75546 5.79730 5.86519 5.92008 5.97465 6.06821 6.36858 6.41631 6.46697 6.79629 6.85718 6.88820 7.10888 7.84420 8.36559 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010542 B = 0.003609 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.317515 B = 7756.851737 C = 8477.328176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.037 3.963 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.488 4.488 8 H 0.080 0.920 9 C 0.075 3.925 10 C -0.077 4.077 11 N -0.457 5.457 12 C -0.101 4.101 13 C 0.194 3.806 14 N -0.726 5.726 15 C 0.193 3.807 16 C -0.093 4.093 17 C -0.103 4.103 18 C -0.123 4.123 19 C -0.104 4.104 20 C -0.157 4.157 21 C 0.095 3.905 22 N -0.507 5.507 23 C 0.041 3.959 24 C 0.068 3.932 25 N -0.686 5.686 26 C 0.063 3.937 27 C 0.029 3.971 28 C -0.225 4.225 29 H 0.286 0.714 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.389 0.611 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.134 0.866 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.127 0.873 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.088 0.912 43 H 0.348 0.652 44 H 0.104 0.896 45 H 0.056 0.944 46 H 0.079 0.921 47 H 0.050 0.950 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.143 -4.439 8.566 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.519 4.519 8 H 0.099 0.901 9 C 0.070 3.930 10 C -0.241 4.241 11 N -0.164 5.164 12 C -0.261 4.261 13 C 0.089 3.911 14 N -0.356 5.356 15 C 0.069 3.931 16 C -0.094 4.094 17 C -0.122 4.122 18 C -0.141 4.141 19 C -0.123 4.123 20 C -0.177 4.177 21 C 0.001 3.999 22 N -0.229 5.229 23 C -0.087 4.087 24 C -0.062 4.062 25 N -0.315 5.315 26 C -0.067 4.067 27 C -0.099 4.099 28 C -0.256 4.256 29 H 0.097 0.903 30 H 0.144 0.856 31 H 0.152 0.848 32 H 0.222 0.778 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.152 0.848 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.145 0.855 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.167 0.833 44 H 0.122 0.878 45 H 0.075 0.925 46 H 0.098 0.902 47 H 0.068 0.932 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.341 -5.374 7.314 19.573 hybrid contribution -0.812 1.827 1.473 2.483 sum -18.153 -3.547 8.787 20.477 Atomic orbital electron populations 1.69867 1.08779 1.30303 1.35637 1.26730 0.95625 1.04247 0.91224 0.85221 0.78701 0.75566 0.80029 1.18462 1.19239 1.18469 1.19766 0.96295 0.91289 1.44524 0.90146 1.18563 0.92126 0.93917 0.88409 1.22465 1.03873 0.89014 1.08752 1.66816 1.07224 1.30082 1.12302 1.21593 0.98932 0.96422 1.09146 1.18640 0.87138 0.94305 0.90997 1.44239 1.25616 1.08827 1.56913 1.19784 0.90080 0.85649 0.97598 1.19850 0.94131 1.00886 0.94581 1.21284 0.99628 0.99074 0.92260 1.21467 0.92465 0.99202 1.00951 1.21369 0.99016 0.97308 0.94604 1.21744 0.98408 1.02104 0.95399 1.18780 0.93380 0.98681 0.89107 1.59552 1.48612 1.05869 1.08829 1.22679 1.00157 0.87090 0.98802 1.21921 0.95618 0.98605 0.90096 1.60639 1.06241 1.05101 1.59559 1.22094 1.02796 0.88380 0.93418 1.22880 0.92191 0.99059 0.95741 1.21015 1.01671 0.95275 1.07632 0.90301 0.85554 0.84770 0.77809 0.92656 0.92918 0.84772 0.83297 0.83469 0.85481 0.92144 0.93323 0.93288 0.89409 0.83298 0.87814 0.92488 0.90230 0.93213 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.47 10.86 21.82 0.24 -42.24 16 2 C 0.04 1.85 5.28 85.25 0.45 2.30 16 3 Si 0.98 38.12 29.57 68.60 2.03 40.15 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.49 -26.62 9.09 23.47 0.21 -26.41 16 8 H 0.08 4.19 7.87 -2.91 -0.02 4.17 16 9 C 0.07 4.20 5.56 -21.21 -0.12 4.08 16 10 C -0.08 -4.22 10.97 85.38 0.94 -3.28 16 11 N -0.46 -24.08 10.33 -193.06 -1.99 -26.08 16 12 C -0.10 -4.88 10.49 84.92 0.89 -3.99 16 13 C 0.19 9.18 6.66 38.24 0.25 9.43 16 14 N -0.73 -27.50 5.73 -342.94 -1.96 -29.46 16 15 C 0.19 6.04 4.64 85.63 0.40 6.44 16 16 C -0.09 -2.40 5.27 -19.74 -0.10 -2.50 16 17 C -0.10 -2.21 9.66 22.25 0.21 -2.00 16 18 C -0.12 -2.08 10.04 22.29 0.22 -1.86 16 19 C -0.10 -1.70 10.04 22.25 0.22 -1.47 16 20 C -0.16 -3.03 8.64 22.40 0.19 -2.84 16 21 C 0.09 2.28 4.70 38.22 0.18 2.46 16 22 N -0.51 -12.78 3.88 -694.76 -2.70 -15.48 16 23 C 0.04 1.03 5.36 86.31 0.46 1.49 16 24 C 0.07 1.82 6.72 86.31 0.58 2.40 16 25 N -0.69 -15.38 6.91 -513.44 -3.55 -18.93 16 26 C 0.06 1.35 6.72 86.31 0.58 1.93 16 27 C 0.03 0.60 5.30 86.31 0.46 1.06 16 28 C -0.22 -12.00 8.63 23.04 0.20 -11.80 16 29 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 30 H 0.13 6.50 8.06 -2.91 -0.02 6.48 16 31 H 0.13 5.81 6.73 -2.91 -0.02 5.79 16 32 H 0.39 14.64 8.48 -92.71 -0.79 13.85 16 33 H 0.06 1.69 7.77 -2.39 -0.02 1.67 16 34 H 0.05 1.81 7.72 -2.39 -0.02 1.79 16 35 H 0.13 2.60 8.01 -2.91 -0.02 2.58 16 36 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 37 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.13 2.11 7.06 -2.91 -0.02 2.09 16 39 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 40 H 0.05 1.03 7.47 -2.39 -0.02 1.01 16 41 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.35 6.04 8.89 -89.70 -0.80 5.24 16 44 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 46 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 47 H 0.05 0.86 7.22 -2.39 -0.02 0.84 16 48 H 0.11 6.15 6.29 -2.91 -0.02 6.13 16 Total: -1.00 -63.60 387.19 -2.30 -65.90 By element: Atomic # 1 Polarization: 51.29 SS G_CDS: -0.60 Total: 50.69 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 6.23 Total: -24.55 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -9.97 Total: -132.19 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -63.60 -2.30 -65.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171286605.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.173 kcal (2) G-P(sol) polarization free energy of solvation -63.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds