Wall clock time and date at job start Tue Mar 31 2020 21:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35767 * 116.99991 * 2 1 4 4 C 1.38928 * 119.91485 * 359.72210 * 3 2 1 5 5 C 1.37739 * 120.11393 * 180.27194 * 4 3 2 6 6 C 1.39724 * 119.95199 * 0.02898 * 5 4 3 7 7 C 1.47601 * 120.07983 * 179.97438 * 6 5 4 8 8 O 1.21588 * 119.99448 * 179.97438 * 7 6 5 9 9 N 1.34776 * 120.00334 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00019 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46858 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46971 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.46971 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.46971 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46971 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.47048 * 180.02562 * 15 14 13 17 17 C 1.36933 * 120.00158 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99797 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00310 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00224 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99692 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46937 * 90.00274 * 21 19 17 23 23 H 1.48502 * 109.47033 * 209.99963 * 21 19 17 24 24 H 1.48500 * 109.47339 * 330.00132 * 21 19 17 25 25 C 1.39739 * 119.83504 * 359.97431 * 6 5 4 26 26 C 1.37891 * 119.88633 * 0.02562 * 25 6 5 27 27 F 1.35099 * 119.98055 * 180.02562 * 26 25 6 28 28 H 1.08993 * 109.46983 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46861 * 300.00316 * 1 2 3 30 30 H 1.09004 * 109.46961 * 59.99711 * 1 2 3 31 31 H 1.07998 * 119.94581 * 0.25585 * 4 3 2 32 32 H 1.08001 * 120.02508 * 180.02562 * 5 4 3 33 33 H 0.97004 * 119.99848 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47173 * 299.99173 * 10 9 7 35 35 H 1.08994 * 109.47458 * 59.99468 * 10 9 7 36 36 H 1.08997 * 109.47472 * 299.99535 * 11 10 9 37 37 H 1.09003 * 109.46878 * 60.00079 * 11 10 9 38 38 H 1.08998 * 109.47491 * 300.00034 * 12 11 10 39 39 H 1.08994 * 109.47027 * 60.00260 * 12 11 10 40 40 H 1.08997 * 109.47472 * 299.99993 * 13 12 11 41 41 H 1.09003 * 109.46878 * 60.00537 * 13 12 11 42 42 H 1.08997 * 109.47017 * 300.00272 * 14 13 12 43 43 H 1.08994 * 109.47027 * 60.00260 * 14 13 12 44 44 H 1.08997 * 109.47472 * 299.99993 * 15 14 13 45 45 H 1.08994 * 109.47033 * 60.00263 * 15 14 13 46 46 H 0.97004 * 119.99947 * 0.02562 * 16 15 14 47 47 H 0.96997 * 119.99832 * 180.02562 * 20 19 17 48 48 H 1.08002 * 120.05353 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2870 2.3737 -0.0058 5 6 1.9081 3.6031 -0.0115 6 6 3.3032 3.6799 -0.0120 7 6 3.9717 4.9958 -0.0187 8 8 5.1858 5.0609 -0.0186 9 7 3.2363 6.1253 -0.0248 10 6 3.8998 7.4313 -0.0320 11 6 2.8447 8.5393 -0.0386 12 6 3.5377 9.9034 -0.0454 13 6 2.4826 11.0114 -0.0527 14 6 3.1756 12.3755 -0.0602 15 6 2.1205 13.4834 -0.0668 16 7 2.7841 14.7896 -0.0746 17 6 2.0369 15.9371 -0.0809 18 1 0.9584 15.8793 -0.0806 19 6 2.6656 17.1747 -0.0889 20 7 1.9474 18.2777 -0.0944 21 14 4.5309 17.2747 -0.0901 22 1 5.0246 17.2925 -1.4906 23 1 4.9605 18.5163 0.6020 24 1 5.0904 16.0948 0.6170 25 6 4.0640 2.5078 -0.0062 26 6 3.4352 1.2806 -0.0005 27 9 4.1689 0.1462 0.0056 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2087 2.3146 -0.0062 32 1 1.3171 4.5071 -0.0156 33 1 2.2676 6.0734 -0.0252 34 1 4.5224 7.5274 0.8575 35 1 4.5225 7.5177 -0.9223 36 1 2.2224 8.4432 -0.9283 37 1 2.2218 8.4531 0.8517 38 1 4.1598 9.9994 0.8444 39 1 4.1609 9.9898 -0.9355 40 1 1.8609 10.9153 -0.9428 41 1 1.8591 10.9251 0.8372 42 1 3.7976 12.4719 0.8297 43 1 3.7989 12.4615 -0.9502 44 1 1.4981 13.3872 -0.9564 45 1 1.4976 13.3973 0.8234 46 1 3.7527 14.8415 -0.0753 47 1 2.3867 19.1424 -0.1003 48 1 5.1426 2.5630 -0.0062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178752146.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:29 Heat of formation + Delta-G solvation = -99.400308 kcal Electronic energy + Delta-G solvation = -26825.704687 eV Core-core repulsion = 22602.283281 eV Total energy + Delta-G solvation = -4223.421406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.32432 -41.00102 -39.99095 -37.78365 -36.91874 -35.61698 -34.14320 -32.17602 -31.45984 -31.20294 -30.21140 -28.29738 -27.13688 -24.65896 -23.70845 -23.22825 -22.09187 -21.40089 -20.87236 -20.71406 -19.24525 -18.26796 -17.64036 -17.47204 -16.85181 -16.69105 -16.35706 -16.10311 -15.68025 -15.44183 -15.39123 -14.94875 -14.68626 -14.44169 -14.42413 -13.90074 -13.66790 -13.38207 -13.19647 -13.17026 -12.88204 -12.71227 -12.55521 -12.44427 -11.92011 -11.88861 -11.75572 -11.64768 -11.48391 -11.03534 -10.88069 -10.80335 -10.53866 -10.38617 -10.25788 -10.07499 -9.70977 -9.57252 -9.54000 -8.92183 -8.87312 -7.20687 -5.75430 -3.10503 0.10819 0.42205 2.21143 2.36518 2.63001 3.11062 3.38915 3.42005 3.46459 3.52125 3.90618 4.10291 4.18239 4.33236 4.45322 4.45828 4.47946 4.60901 4.65756 4.78754 4.82837 4.84339 5.07726 5.12860 5.19951 5.25363 5.28727 5.33639 5.46875 5.47371 5.52781 5.56872 5.62645 5.76844 5.84192 5.84399 5.98889 6.00341 6.11168 6.20243 6.23104 6.36904 6.48701 6.78684 6.82864 7.00092 7.73200 8.01579 8.44034 9.23683 9.96320 10.16650 11.43168 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031078 B = 0.001247 C = 0.001201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.755342 B =22455.827114 C =23309.620884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.122 3.878 4 C -0.190 4.190 5 C -0.053 4.053 6 C -0.145 4.145 7 C 0.561 3.439 8 O -0.533 6.533 9 N -0.725 5.725 10 C 0.117 3.883 11 C -0.131 4.131 12 C -0.117 4.117 13 C -0.113 4.113 14 C -0.131 4.131 15 C 0.156 3.844 16 N -0.759 5.759 17 C -0.245 4.245 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.936 5.936 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.055 4.055 26 C 0.063 3.937 27 F -0.127 7.127 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.400 0.600 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.025 0.975 45 H 0.024 0.976 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 -41.168 0.224 41.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.075 3.925 4 C -0.209 4.209 5 C -0.072 4.072 6 C -0.149 4.149 7 C 0.348 3.652 8 O -0.411 6.411 9 N -0.377 5.377 10 C -0.006 4.006 11 C -0.169 4.169 12 C -0.155 4.155 13 C -0.151 4.151 14 C -0.169 4.169 15 C 0.029 3.971 16 N -0.404 5.404 17 C -0.375 4.375 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.584 5.584 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.075 4.075 26 C 0.043 3.957 27 F -0.105 7.105 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.156 0.844 33 H 0.235 0.765 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.553 -41.183 0.227 41.263 hybrid contribution 0.617 0.155 0.006 0.637 sum -1.935 -41.028 0.233 41.074 Atomic orbital electron populations 1.23229 0.77208 1.04842 1.01903 1.86135 1.22332 1.25601 1.87705 1.19299 0.90872 0.85874 0.96482 1.21098 1.00765 0.91033 1.07998 1.21166 0.93167 0.97853 0.94965 1.19644 0.93359 0.93294 1.08591 1.17993 0.86885 0.83752 0.76565 1.90820 1.13409 1.87397 1.49455 1.45927 1.10305 1.05988 1.75449 1.21499 0.95712 0.80492 1.02897 1.21836 0.97974 0.94250 1.02871 1.21519 0.98539 0.92755 1.02659 1.21491 0.97722 0.93772 1.02158 1.21783 0.99079 0.94139 1.01881 1.20635 0.93773 0.84313 0.98377 1.42748 1.04616 1.01873 1.91175 1.19091 0.92319 0.83199 1.42850 0.89279 1.24679 0.97304 0.95195 1.02089 1.69705 1.34053 0.96868 1.57753 0.86523 0.87189 0.76894 0.77790 1.21071 1.21703 1.20335 1.21107 1.02021 0.88833 0.95546 1.16771 0.85922 0.83039 1.09973 1.91541 1.76457 1.48254 1.94283 0.87540 0.91977 0.91982 0.83585 0.84425 0.76494 0.91062 0.91070 0.91157 0.91164 0.91595 0.91597 0.91890 0.91896 0.92134 0.92117 0.95724 0.95769 0.80713 0.93088 0.82487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 101.05 0.99 1.04 16 2 O -0.31 -2.01 10.35 -19.01 -0.20 -2.21 16 3 C 0.12 0.83 6.70 -38.98 -0.26 0.57 16 4 C -0.19 -0.82 9.01 -39.51 -0.36 -1.18 16 5 C -0.05 -0.24 9.53 -39.21 -0.37 -0.61 16 6 C -0.15 -1.05 5.87 -104.96 -0.62 -1.67 16 7 C 0.56 5.15 7.76 -12.44 -0.10 5.05 16 8 O -0.53 -7.00 16.34 5.29 0.09 -6.91 16 9 N -0.72 -4.83 5.51 -61.33 -0.34 -5.17 16 10 C 0.12 0.88 5.67 -4.04 -0.02 0.86 16 11 C -0.13 -0.86 5.33 -26.73 -0.14 -1.00 16 12 C -0.12 -1.02 5.21 -26.73 -0.14 -1.16 16 13 C -0.11 -1.23 5.21 -26.73 -0.14 -1.37 16 14 C -0.13 -1.92 5.33 -26.73 -0.14 -2.07 16 15 C 0.16 3.03 6.26 -4.04 -0.03 3.00 16 16 N -0.76 -18.56 5.41 -59.91 -0.32 -18.89 16 17 C -0.24 -7.11 10.47 -15.06 -0.16 -7.26 16 18 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 19 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 20 N -0.94 -29.77 13.97 55.49 0.78 -29.00 16 21 Si 0.89 22.43 27.73 -169.99 -4.71 17.71 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 24 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 25 C -0.06 -0.45 9.56 -39.15 -0.37 -0.82 16 26 C 0.06 0.52 7.30 -39.36 -0.29 0.23 16 27 F -0.13 -1.23 17.10 2.25 0.04 -1.19 16 28 H 0.11 0.07 8.14 -51.93 -0.42 -0.35 16 29 H 0.06 0.06 7.66 -51.93 -0.40 -0.34 16 30 H 0.06 0.06 7.64 -51.93 -0.40 -0.34 16 31 H 0.15 0.23 6.27 -52.49 -0.33 -0.10 16 32 H 0.14 0.21 6.39 -52.49 -0.34 -0.13 16 33 H 0.40 1.46 6.49 -40.82 -0.27 1.20 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.36 8.56 5.53 -40.82 -0.23 8.34 16 47 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 48 H 0.16 1.29 7.64 -52.49 -0.40 0.89 16 LS Contribution 401.53 15.07 6.05 6.05 Total: -1.00 -36.47 401.53 -8.30 -44.77 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.44 Total: 1.22 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.24 Total: -6.40 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.11 Total: -53.05 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.11 Total: -9.12 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.47 -8.30 -44.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178752146.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.628 kcal (2) G-P(sol) polarization free energy of solvation -36.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds