Wall clock time and date at job start Tue Mar 31 2020 21:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35711 * 117.00083 * 2 1 4 4 C 1.39095 * 119.88658 * 0.02562 * 3 2 1 5 5 C 1.37611 * 120.15660 * 179.76731 * 4 3 2 6 6 C 1.39806 * 119.93659 * 0.46548 * 5 4 3 7 7 C 1.47452 * 120.11480 * 179.78974 * 6 5 4 8 8 O 1.21603 * 120.00270 * 179.72473 * 7 6 5 9 9 N 1.34777 * 119.99473 * 359.72163 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72398 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47000 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47510 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47271 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.46959 * 179.97438 * 15 14 13 17 17 C 1.36936 * 119.99757 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00471 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99709 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99873 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99559 * 21 19 17 23 23 H 1.48494 * 109.47201 * 209.99726 * 21 19 17 24 24 H 1.48498 * 109.47011 * 329.99700 * 21 19 17 25 25 C 1.39990 * 119.77984 * 359.51485 * 6 5 4 26 26 F 1.35102 * 120.08629 * 180.27262 * 25 6 5 27 27 C 1.38062 * 119.83594 * 0.25414 * 25 6 5 28 28 H 1.09004 * 109.47402 * 59.99851 * 1 2 3 29 29 H 1.08997 * 109.47641 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47451 * 300.00440 * 1 2 3 31 31 H 1.08000 * 119.92497 * 0.02562 * 4 3 2 32 32 H 1.08003 * 120.02982 * 180.23381 * 5 4 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 34 34 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 35 35 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 36 36 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 37 37 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 38 38 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 39 39 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 40 40 H 1.09008 * 109.47165 * 300.00083 * 13 12 11 41 41 H 1.08998 * 109.47285 * 60.00156 * 13 12 11 42 42 H 1.09000 * 109.46793 * 300.00282 * 14 13 12 43 43 H 1.08998 * 109.47049 * 59.99608 * 14 13 12 44 44 H 1.08994 * 109.47190 * 299.99512 * 15 14 13 45 45 H 1.08998 * 109.47408 * 59.99824 * 15 14 13 46 46 H 0.97000 * 120.00380 * 0.02562 * 16 15 14 47 47 H 0.97005 * 120.00046 * 180.02562 * 20 19 17 48 48 H 1.07998 * 119.96622 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2853 2.3742 0.0005 5 6 1.9042 3.6033 0.0054 6 6 3.3001 3.6815 -0.0001 7 6 3.9674 4.9964 0.0004 8 8 5.1816 5.0620 0.0007 9 7 3.2314 6.1255 0.0004 10 6 3.8944 7.4319 0.0070 11 6 2.8388 8.5394 0.0126 12 6 3.5312 9.9038 0.0201 13 6 2.4756 11.0113 0.0264 14 6 3.1679 12.3757 0.0332 15 6 2.1123 13.4832 0.0401 16 7 2.7752 14.7896 0.0473 17 6 2.0275 15.9368 0.0538 18 1 0.9491 15.8785 0.0531 19 6 2.6556 17.1746 0.0611 20 7 1.9370 18.2773 0.0668 21 14 4.5209 17.2755 0.0615 22 1 5.0150 17.3106 -1.3384 23 1 4.9498 18.5088 0.7688 24 1 5.0807 16.0874 0.7544 25 6 4.0623 2.5073 -0.0002 26 9 5.4116 2.5757 0.0001 27 6 3.4317 1.2791 -0.0002 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2069 2.3142 0.0014 32 1 1.3122 4.5066 0.0096 33 1 2.2628 6.0731 0.0005 34 1 4.5170 7.5189 0.8975 35 1 4.5170 7.5279 -0.8825 36 1 2.2162 8.4524 -0.8778 37 1 2.2161 8.4435 0.9022 38 1 4.1535 9.9906 0.9107 39 1 4.1540 10.0001 -0.8693 40 1 1.8528 10.9248 -0.8641 41 1 1.8530 10.9150 0.9159 42 1 3.7909 12.4625 0.9234 43 1 3.7901 12.4719 -0.8565 44 1 1.4890 13.3966 -0.8498 45 1 1.4903 13.3869 0.9301 46 1 3.7438 14.8420 0.0468 47 1 2.3759 19.1423 0.0716 48 1 4.0176 0.3719 -0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178958427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:33 Heat of formation + Delta-G solvation = -98.542123 kcal Electronic energy + Delta-G solvation = -27004.056736 eV Core-core repulsion = 22780.672544 eV Total energy + Delta-G solvation = -4223.384192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.34263 -40.98519 -39.95148 -37.67139 -36.89264 -35.56523 -34.10582 -32.31186 -31.64266 -30.91976 -30.17806 -28.24718 -27.13844 -24.60506 -23.93245 -22.97589 -22.03830 -21.38738 -20.85697 -20.69051 -19.27347 -18.13040 -17.62765 -17.45552 -16.68544 -16.64333 -16.33401 -16.01916 -15.94498 -15.42946 -15.24923 -15.24654 -14.57931 -14.32279 -14.22637 -13.88253 -13.57889 -13.26791 -13.18677 -13.16673 -12.94863 -12.88484 -12.69213 -12.42357 -11.86305 -11.79557 -11.66624 -11.62451 -11.45908 -11.01796 -10.86407 -10.78957 -10.45565 -10.37062 -10.20756 -10.05959 -9.62102 -9.56495 -9.49569 -9.01286 -8.86470 -7.19819 -5.74695 -3.09692 0.14290 0.45070 2.29586 2.33754 2.69812 3.11339 3.39720 3.42907 3.47186 3.65426 3.89133 4.12613 4.18291 4.36633 4.44509 4.48393 4.50834 4.61572 4.61701 4.68622 4.80694 4.86223 5.10253 5.15317 5.22841 5.28518 5.30804 5.36642 5.45608 5.49458 5.55103 5.58235 5.65150 5.79424 5.86597 5.89714 6.01994 6.03730 6.12657 6.21813 6.24802 6.38375 6.50165 6.79852 6.84048 7.04932 7.80681 8.02447 8.44778 9.24504 9.97166 10.17529 11.43893 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026861 B = 0.001305 C = 0.001247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.153456 B =21451.308086 C =22446.462453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.308 6.308 3 C 0.185 3.815 4 C -0.228 4.228 5 C -0.015 4.015 6 C -0.213 4.213 7 C 0.559 3.441 8 O -0.526 6.526 9 N -0.726 5.726 10 C 0.118 3.882 11 C -0.131 4.131 12 C -0.117 4.117 13 C -0.113 4.113 14 C -0.131 4.131 15 C 0.156 3.844 16 N -0.759 5.759 17 C -0.245 4.245 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.936 5.936 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.203 3.797 26 F -0.107 7.107 27 C -0.203 4.203 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.398 0.602 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.025 0.975 45 H 0.024 0.976 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.784 -42.532 -0.181 42.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.220 6.220 3 C 0.138 3.862 4 C -0.247 4.247 5 C -0.034 4.034 6 C -0.217 4.217 7 C 0.346 3.654 8 O -0.403 6.403 9 N -0.378 5.378 10 C -0.005 4.005 11 C -0.169 4.169 12 C -0.155 4.155 13 C -0.151 4.151 14 C -0.169 4.169 15 C 0.029 3.971 16 N -0.404 5.404 17 C -0.374 4.374 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.584 5.584 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.182 3.818 26 F -0.085 7.085 27 C -0.222 4.222 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.234 0.766 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.967 -42.500 -0.179 42.604 hybrid contribution 0.735 0.352 0.011 0.815 sum -2.231 -42.148 -0.168 42.207 Atomic orbital electron populations 1.23227 0.77180 1.04779 1.02002 1.86071 1.22342 1.26293 1.87319 1.18848 0.91363 0.84656 0.91356 1.21245 1.00953 0.91669 1.10815 1.20963 0.92128 0.98043 0.92219 1.19940 0.94164 0.93017 1.14625 1.17871 0.86939 0.83639 0.76925 1.90870 1.13151 1.87291 1.48979 1.45897 1.10159 1.05915 1.75871 1.21482 0.95687 0.80495 1.02848 1.21831 0.97971 0.94252 1.02830 1.21519 0.98535 0.92760 1.02659 1.21491 0.97721 0.93771 1.02146 1.21783 0.99078 0.94140 1.01884 1.20633 0.93776 0.84310 0.98372 1.42748 1.04621 1.01873 1.91172 1.19092 0.92315 0.83201 1.42837 0.89277 1.24680 0.97301 0.95196 1.02095 1.69707 1.34045 0.96866 1.57771 0.86521 0.87192 0.76901 0.77785 1.21072 1.21706 1.20331 1.17222 0.77560 0.92109 0.94888 1.91634 1.27545 1.96965 1.92308 1.20237 0.92581 0.97728 1.11700 0.91956 0.87592 0.91950 0.83941 0.84184 0.76639 0.91142 0.91130 0.91179 0.91193 0.91607 0.91595 0.91899 0.91902 0.92135 0.92117 0.95721 0.95774 0.80711 0.93095 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.03 9.81 101.05 0.99 1.02 16 2 O -0.31 -1.60 10.48 -18.84 -0.20 -1.80 16 3 C 0.18 1.08 6.69 -39.04 -0.26 0.82 16 4 C -0.23 -0.96 9.01 -39.49 -0.36 -1.32 16 5 C -0.01 -0.07 9.53 -39.22 -0.37 -0.44 16 6 C -0.21 -1.77 5.88 -104.90 -0.62 -2.39 16 7 C 0.56 5.87 7.76 -12.51 -0.10 5.77 16 8 O -0.53 -7.77 15.33 5.27 0.08 -7.69 16 9 N -0.73 -5.48 5.51 -61.37 -0.34 -5.82 16 10 C 0.12 0.98 5.67 -4.04 -0.02 0.96 16 11 C -0.13 -0.92 5.33 -26.73 -0.14 -1.07 16 12 C -0.12 -1.07 5.21 -26.73 -0.14 -1.20 16 13 C -0.11 -1.26 5.21 -26.73 -0.14 -1.40 16 14 C -0.13 -1.96 5.33 -26.73 -0.14 -2.10 16 15 C 0.16 3.06 6.26 -4.04 -0.03 3.04 16 16 N -0.76 -18.69 5.41 -59.92 -0.32 -19.02 16 17 C -0.24 -7.14 10.47 -15.06 -0.16 -7.29 16 18 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 20 N -0.94 -29.88 13.97 55.49 0.78 -29.10 16 21 Si 0.89 22.55 27.74 -169.99 -4.71 17.83 16 22 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 24 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 25 C 0.20 1.86 7.28 -38.99 -0.28 1.58 16 26 F -0.11 -1.25 15.54 2.25 0.03 -1.21 16 27 C -0.20 -1.43 9.95 -39.43 -0.39 -1.83 16 28 H 0.06 0.03 7.65 -51.93 -0.40 -0.37 16 29 H 0.11 -0.01 8.14 -51.93 -0.42 -0.43 16 30 H 0.06 0.03 7.65 -51.93 -0.40 -0.37 16 31 H 0.14 0.22 6.27 -52.49 -0.33 -0.11 16 32 H 0.14 0.26 6.39 -52.48 -0.34 -0.08 16 33 H 0.40 1.73 6.49 -40.82 -0.27 1.46 16 34 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.36 8.63 5.53 -40.82 -0.23 8.40 16 47 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 48 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -37.05 399.86 -8.37 -45.42 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.46 Total: 1.24 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.26 Total: -5.88 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.11 Total: -53.94 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.12 Total: -9.49 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.03 Total: -1.21 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.71 Total: 17.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.05 -8.37 -45.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178958427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.119 kcal (2) G-P(sol) polarization free energy of solvation -37.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds