Wall clock time and date at job start Tue Mar 31 2020 21:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35711 * 117.00083 * 2 1 4 4 C 1.39095 * 119.88658 * 0.02562 * 3 2 1 5 5 C 1.37611 * 120.15660 * 179.76731 * 4 3 2 6 6 C 1.39806 * 119.93659 * 0.46548 * 5 4 3 7 7 C 1.47452 * 120.11480 * 179.78974 * 6 5 4 8 8 O 1.21603 * 120.00270 * 179.72473 * 7 6 5 9 9 N 1.34777 * 119.99473 * 359.72163 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72398 * 9 7 6 11 11 C 1.53004 * 109.47198 * 180.27868 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47000 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47510 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47271 * 180.02562 * 14 13 12 16 16 N 1.46499 * 109.46959 * 179.97438 * 15 14 13 17 17 C 1.36936 * 119.99757 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00471 * 359.97438 * 17 16 15 19 19 C 1.38817 * 119.99709 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99873 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99559 * 21 19 17 23 23 H 1.48494 * 109.47201 * 209.99726 * 21 19 17 24 24 H 1.48498 * 109.47011 * 329.99700 * 21 19 17 25 25 C 1.39990 * 119.77984 * 359.51485 * 6 5 4 26 26 F 1.35102 * 120.08629 * 180.27262 * 25 6 5 27 27 C 1.38062 * 119.83594 * 0.25414 * 25 6 5 28 28 H 1.09004 * 109.47402 * 59.99851 * 1 2 3 29 29 H 1.08997 * 109.47641 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47451 * 300.00440 * 1 2 3 31 31 H 1.08000 * 119.92497 * 0.02562 * 4 3 2 32 32 H 1.08003 * 120.02982 * 180.23381 * 5 4 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 34 34 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 35 35 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 36 36 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 37 37 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 38 38 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 39 39 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 40 40 H 1.09008 * 109.47165 * 300.00083 * 13 12 11 41 41 H 1.08998 * 109.47285 * 60.00156 * 13 12 11 42 42 H 1.09000 * 109.46793 * 300.00282 * 14 13 12 43 43 H 1.08998 * 109.47049 * 59.99608 * 14 13 12 44 44 H 1.08994 * 109.47190 * 299.99512 * 15 14 13 45 45 H 1.08998 * 109.47408 * 59.99824 * 15 14 13 46 46 H 0.97000 * 120.00380 * 0.02562 * 16 15 14 47 47 H 0.97005 * 120.00046 * 180.02562 * 20 19 17 48 48 H 1.07998 * 119.96622 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2853 2.3742 0.0005 5 6 1.9042 3.6033 0.0054 6 6 3.3001 3.6815 -0.0001 7 6 3.9674 4.9964 0.0004 8 8 5.1816 5.0620 0.0007 9 7 3.2314 6.1255 0.0004 10 6 3.8944 7.4319 0.0070 11 6 2.8388 8.5394 0.0126 12 6 3.5312 9.9038 0.0201 13 6 2.4756 11.0113 0.0264 14 6 3.1679 12.3757 0.0332 15 6 2.1123 13.4832 0.0401 16 7 2.7752 14.7896 0.0473 17 6 2.0275 15.9368 0.0538 18 1 0.9491 15.8785 0.0531 19 6 2.6556 17.1746 0.0611 20 7 1.9370 18.2773 0.0668 21 14 4.5209 17.2755 0.0615 22 1 5.0150 17.3106 -1.3384 23 1 4.9498 18.5088 0.7688 24 1 5.0807 16.0874 0.7544 25 6 4.0623 2.5073 -0.0002 26 9 5.4116 2.5757 0.0001 27 6 3.4317 1.2791 -0.0002 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2069 2.3142 0.0014 32 1 1.3122 4.5066 0.0096 33 1 2.2628 6.0731 0.0005 34 1 4.5170 7.5189 0.8975 35 1 4.5170 7.5279 -0.8825 36 1 2.2162 8.4524 -0.8778 37 1 2.2161 8.4435 0.9022 38 1 4.1535 9.9906 0.9107 39 1 4.1540 10.0001 -0.8693 40 1 1.8528 10.9248 -0.8641 41 1 1.8530 10.9150 0.9159 42 1 3.7909 12.4625 0.9234 43 1 3.7901 12.4719 -0.8565 44 1 1.4890 13.3966 -0.8498 45 1 1.4903 13.3869 0.9301 46 1 3.7438 14.8420 0.0468 47 1 2.3759 19.1423 0.0716 48 1 4.0176 0.3719 -0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178958427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:32 Heat of formation + Delta-G solvation = -124.069799 kcal Electronic energy + Delta-G solvation = -27005.163699 eV Core-core repulsion = 22780.672544 eV Total energy + Delta-G solvation = -4224.491155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.06129 -41.45898 -40.57557 -38.16732 -37.89768 -36.84669 -35.37275 -33.74560 -32.57226 -31.75170 -31.12626 -28.72295 -28.06535 -25.75182 -24.66812 -23.84856 -23.15043 -22.27041 -22.10865 -21.42330 -19.72951 -19.59257 -18.68774 -18.13571 -17.21169 -17.16585 -16.96455 -16.73199 -16.59485 -16.51980 -16.17616 -15.96640 -15.79630 -15.67146 -15.30300 -14.88635 -14.68564 -14.15527 -14.12772 -14.03799 -13.69271 -13.46490 -13.38003 -13.35466 -13.19709 -13.02811 -12.67181 -12.46533 -12.09387 -12.05654 -12.02234 -11.88604 -11.84902 -11.79912 -11.55093 -11.32181 -11.06638 -10.97124 -10.22172 -10.10386 -9.46908 -9.30666 -8.04496 -5.38091 -0.38678 0.00548 1.37486 1.40931 1.48562 1.67634 1.99602 2.09269 2.47606 2.55101 3.17481 3.26999 3.51667 3.55792 3.63121 3.81017 3.90711 4.03619 4.06750 4.13019 4.22618 4.25616 4.31226 4.38844 4.44316 4.60099 4.61624 4.70713 4.77055 4.79179 4.83362 4.88320 4.95347 4.98294 5.00183 5.05162 5.06498 5.15985 5.29142 5.32543 5.39828 5.43975 5.54533 5.57169 5.74248 6.19347 6.20217 6.45317 7.06882 7.13382 7.84073 8.02987 9.17097 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026861 B = 0.001305 C = 0.001247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.153456 B =21451.308086 C =22446.462453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.324 6.324 3 C 0.186 3.814 4 C -0.216 4.216 5 C -0.002 4.002 6 C -0.231 4.231 7 C 0.554 3.446 8 O -0.581 6.581 9 N -0.708 5.708 10 C 0.120 3.880 11 C -0.118 4.118 12 C -0.114 4.114 13 C -0.105 4.105 14 C -0.122 4.122 15 C 0.150 3.850 16 N -0.763 5.763 17 C -0.241 4.241 18 H 0.056 0.944 19 C -0.064 4.064 20 N -0.984 5.984 21 Si 0.958 3.042 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.252 1.252 25 C 0.172 3.828 26 F -0.133 7.133 27 C -0.212 4.212 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.179 0.821 32 H 0.176 0.824 33 H 0.417 0.583 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.023 0.977 45 H 0.022 0.978 46 H 0.366 0.634 47 H 0.259 0.741 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.114 -44.396 -0.175 44.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.236 6.236 3 C 0.138 3.862 4 C -0.234 4.234 5 C -0.020 4.020 6 C -0.236 4.236 7 C 0.342 3.658 8 O -0.463 6.463 9 N -0.361 5.361 10 C -0.004 4.004 11 C -0.155 4.155 12 C -0.152 4.152 13 C -0.143 4.143 14 C -0.159 4.159 15 C 0.024 3.976 16 N -0.409 5.409 17 C -0.372 4.372 18 H 0.074 0.926 19 C -0.256 4.256 20 N -0.634 5.634 21 Si 0.785 3.215 22 H -0.203 1.203 23 H -0.220 1.220 24 H -0.177 1.177 25 C 0.152 3.848 26 F -0.111 7.111 27 C -0.231 4.231 28 H 0.095 0.905 29 H 0.137 0.863 30 H 0.095 0.905 31 H 0.196 0.804 32 H 0.193 0.807 33 H 0.255 0.745 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.041 0.959 45 H 0.040 0.960 46 H 0.199 0.801 47 H 0.067 0.933 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.353 -44.419 -0.173 44.633 hybrid contribution 0.930 0.833 0.006 1.248 sum -3.423 -43.586 -0.168 43.721 Atomic orbital electron populations 1.23569 0.75050 1.06301 1.03385 1.86066 1.24558 1.26061 1.86915 1.18974 0.90963 0.85709 0.90509 1.21633 1.02566 0.90515 1.08671 1.21325 0.90553 0.99840 0.90324 1.19932 0.95636 0.91450 1.16555 1.18283 0.86473 0.84944 0.76052 1.90834 1.15556 1.88091 1.51778 1.45738 1.10989 1.04948 1.74464 1.21401 0.96072 0.81272 1.01642 1.21708 0.97393 0.92178 1.04263 1.21455 0.98037 0.93177 1.02541 1.21422 0.98037 0.91997 1.02877 1.21708 0.97852 0.94404 1.01985 1.20873 0.95114 0.83637 0.97982 1.42814 1.04781 1.02321 1.91013 1.19098 0.91369 0.85121 1.41636 0.92643 1.25551 1.02907 0.94675 1.02432 1.69890 1.36424 0.97533 1.59593 0.85362 0.80432 0.77525 0.78196 1.20284 1.22004 1.17676 1.17596 0.76761 0.93478 0.96978 1.91558 1.29524 1.97157 1.92883 1.20297 0.93688 0.97076 1.12086 0.90497 0.86269 0.90489 0.80364 0.80657 0.74476 0.92489 0.92462 0.89705 0.89733 0.91851 0.91803 0.91171 0.91213 0.92107 0.91962 0.95877 0.95986 0.80127 0.93260 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.32 -2.70 10.48 -90.32 -0.95 -3.65 16 3 C 0.19 1.84 6.69 22.62 0.15 1.99 16 4 C -0.22 -1.07 9.01 22.33 0.20 -0.87 16 5 C 0.00 -0.01 9.53 22.50 0.21 0.20 16 6 C -0.23 -3.74 5.88 -20.05 -0.12 -3.86 16 7 C 0.55 11.66 7.76 86.67 0.67 12.33 16 8 O -0.58 -18.22 15.33 -4.04 -0.06 -18.29 16 9 N -0.71 -9.51 5.51 -466.33 -2.57 -12.08 16 10 C 0.12 1.83 5.67 86.38 0.49 2.32 16 11 C -0.12 -1.30 5.33 30.59 0.16 -1.14 16 12 C -0.11 -1.78 5.21 30.59 0.16 -1.62 16 13 C -0.11 -2.04 5.21 30.60 0.16 -1.88 16 14 C -0.12 -3.35 5.33 30.59 0.16 -3.19 16 15 C 0.15 5.67 6.26 86.38 0.54 6.22 16 16 N -0.76 -36.81 5.41 -343.47 -1.86 -38.66 16 17 C -0.24 -14.20 10.47 84.03 0.88 -13.32 16 18 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 19 C -0.06 -3.86 5.50 84.86 0.47 -3.40 16 20 N -0.98 -64.00 13.97 21.65 0.30 -63.70 16 21 Si 0.96 46.19 27.74 68.60 1.90 48.09 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 24 H -0.25 -11.00 6.52 99.48 0.65 -10.35 16 25 C 0.17 3.35 7.28 22.65 0.16 3.51 16 26 F -0.13 -3.47 15.54 44.97 0.70 -2.77 16 27 C -0.21 -3.06 9.95 22.37 0.22 -2.83 16 28 H 0.08 -0.23 7.65 -2.39 -0.02 -0.25 16 29 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H 0.08 -0.23 7.65 -2.38 -0.02 -0.25 16 31 H 0.18 -0.41 6.27 -2.91 -0.02 -0.43 16 32 H 0.18 -0.19 6.39 -2.91 -0.02 -0.21 16 33 H 0.42 2.22 6.49 -92.71 -0.60 1.62 16 34 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.37 16.71 5.53 -92.71 -0.51 16.20 16 47 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 48 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -84.45 399.86 2.92 -81.54 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -0.20 Total: 13.94 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 5.64 Total: -4.42 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -4.12 Total: -114.44 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -1.01 Total: -21.94 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.70 Total: -2.77 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.90 Total: 48.09 kcal Total: -84.45 2.92 -81.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178958427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.534 kcal (2) G-P(sol) polarization free energy of solvation -84.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds