Wall clock time and date at job start Tue Mar 31 2020 21:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35695 * 117.00079 * 2 1 4 4 C 1.38688 * 120.12597 * 359.72284 * 3 2 1 5 5 C 1.38044 * 120.11588 * 180.27550 * 4 3 2 6 6 C 1.38734 * 120.36544 * 0.02562 * 5 4 3 7 7 F 1.35095 * 119.87770 * 180.02562 * 6 5 4 8 8 C 1.37983 * 120.24856 * 359.97438 * 6 5 4 9 9 C 1.39723 * 119.88032 * 0.02562 * 8 6 5 10 10 C 1.47537 * 120.18301 * 179.97438 * 9 8 6 11 11 O 1.21584 * 120.00260 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99712 * 0.02562 * 10 9 8 13 13 C 1.46493 * 120.00043 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47280 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47359 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47356 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47356 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.46992 * 180.02562 * 17 16 15 19 19 N 1.46506 * 109.47047 * 180.02562 * 18 17 16 20 20 C 1.36931 * 120.00007 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00507 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99780 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00011 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99900 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47067 * 59.99680 * 24 22 20 26 26 H 1.48496 * 109.47269 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47129 * 299.99760 * 24 22 20 28 28 H 1.09004 * 109.47337 * 59.99907 * 1 2 3 29 29 H 1.09000 * 109.47314 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47365 * 300.00240 * 1 2 3 31 31 H 1.08007 * 119.93781 * 0.25059 * 4 3 2 32 32 H 1.07998 * 119.82006 * 179.97438 * 5 4 3 33 33 H 1.07995 * 120.06271 * 180.02562 * 8 6 5 34 34 H 0.96998 * 119.99657 * 359.97438 * 12 10 9 35 35 H 1.09006 * 109.47300 * 299.99619 * 13 12 10 36 36 H 1.08997 * 109.47742 * 59.99095 * 13 12 10 37 37 H 1.09004 * 109.47212 * 299.99499 * 14 13 12 38 38 H 1.09000 * 109.47226 * 59.99731 * 14 13 12 39 39 H 1.09001 * 109.47111 * 299.99631 * 15 14 13 40 40 H 1.09000 * 109.46939 * 59.99839 * 15 14 13 41 41 H 1.08995 * 109.47687 * 300.00256 * 16 15 14 42 42 H 1.09005 * 109.46915 * 59.99744 * 16 15 14 43 43 H 1.09001 * 109.47111 * 300.00029 * 17 16 15 44 44 H 1.09000 * 109.46939 * 60.00236 * 17 16 15 45 45 H 1.09004 * 109.47393 * 299.99669 * 18 17 16 46 46 H 1.09000 * 109.47413 * 60.00125 * 18 17 16 47 47 H 0.97003 * 119.99648 * 359.97438 * 19 18 17 48 48 H 0.97001 * 119.99927 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2923 2.3738 -0.0058 5 6 1.9193 3.6037 -0.0115 6 6 3.3042 3.6848 -0.0121 7 9 3.9075 4.8936 -0.0172 8 6 4.0679 2.5356 -0.0064 9 6 3.4440 1.2854 -0.0005 10 6 4.2541 0.0523 0.0050 11 8 3.7078 -1.0339 0.0096 12 7 5.5996 0.1299 0.0050 13 6 6.4040 -1.0944 0.0100 14 6 7.8896 -0.7287 0.0082 15 6 8.7297 -2.0074 0.0141 16 6 10.2153 -1.6417 0.0117 17 6 11.0554 -2.9204 0.0182 18 6 12.5410 -2.5546 0.0164 19 7 13.3454 -3.7790 0.0220 20 6 14.7125 -3.7001 0.0221 21 1 15.1977 -2.7353 0.0176 22 6 15.4747 -4.8603 0.0268 23 7 14.8833 -6.0361 0.0318 24 14 17.3395 -4.7527 0.0263 25 1 17.7935 -4.0202 1.2357 26 1 17.9144 -6.1218 0.0325 27 1 17.7933 -4.0303 -1.1893 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2137 2.3185 -0.0062 32 1 1.3284 4.5077 -0.0165 33 1 5.1458 2.6023 -0.0064 34 1 6.0354 0.9965 0.0010 35 1 6.1739 -1.6768 0.9023 36 1 6.1742 -1.6838 -0.8776 37 1 8.1195 -0.1467 -0.8843 38 1 8.1197 -0.1392 0.8957 39 1 8.4998 -2.5891 0.9068 40 1 8.4996 -2.5973 -0.8732 41 1 10.4450 -1.0602 -0.8811 42 1 10.4456 -1.0515 0.8988 43 1 10.8257 -3.5015 0.9113 44 1 10.8252 -3.5108 -0.8687 45 1 12.7710 -1.9733 -0.8765 46 1 12.7709 -1.9643 0.9034 47 1 12.9096 -4.6456 0.0264 48 1 15.4159 -6.8468 0.0355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179179523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:13 Heat of formation + Delta-G solvation = -100.916053 kcal Electronic energy + Delta-G solvation = -27139.206161 eV Core-core repulsion = 22915.719027 eV Total energy + Delta-G solvation = -4223.487134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.36652 -41.09365 -39.42898 -37.69830 -36.78324 -35.37790 -33.97581 -32.50093 -31.59906 -30.36397 -29.89191 -27.84740 -26.97337 -24.91963 -23.83684 -22.80653 -22.15743 -21.38261 -20.70272 -20.62299 -19.05468 -18.13322 -17.60060 -16.96169 -16.53865 -16.52022 -16.15863 -15.92676 -15.91254 -15.41386 -15.19731 -15.06810 -14.63062 -14.24005 -14.04832 -13.64900 -13.49262 -13.37482 -13.35048 -13.09548 -12.73727 -12.69694 -12.48287 -12.30830 -11.81796 -11.69693 -11.51396 -11.33356 -11.16698 -10.88848 -10.70186 -10.69754 -10.43269 -10.23083 -10.17818 -9.94480 -9.90288 -9.61181 -9.35734 -8.81663 -8.72345 -6.86381 -5.71563 -2.99924 0.09829 0.54325 2.34031 2.64396 2.75946 3.18069 3.47276 3.51037 3.52615 3.61440 3.94579 3.97738 4.35655 4.42977 4.55567 4.61473 4.62295 4.66472 4.77955 4.79064 4.93526 4.98584 5.02588 5.23774 5.26158 5.38344 5.38939 5.42223 5.47040 5.58535 5.66559 5.72483 5.76820 5.96493 5.97837 5.99034 6.13038 6.16475 6.36899 6.37436 6.44526 6.51687 6.71684 6.94781 6.98820 7.15251 7.73694 7.91015 8.47810 9.58328 10.18219 10.52804 11.51498 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.001319 C = 0.001253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.158020 B =21220.266600 C =22335.465875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.276 6.276 3 C 0.177 3.823 4 C -0.192 4.192 5 C -0.085 4.085 6 C 0.053 3.947 7 F -0.136 7.136 8 C -0.082 4.082 9 C -0.145 4.145 10 C 0.559 3.441 11 O -0.512 6.512 12 N -0.728 5.728 13 C 0.119 3.881 14 C -0.132 4.132 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.127 4.127 18 C 0.152 3.848 19 N -0.735 5.735 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.398 0.602 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.792 21.641 -0.100 40.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.187 6.187 3 C 0.129 3.871 4 C -0.210 4.210 5 C -0.104 4.104 6 C 0.034 3.966 7 F -0.115 7.115 8 C -0.101 4.101 9 C -0.149 4.149 10 C 0.345 3.655 11 O -0.388 6.388 12 N -0.381 5.381 13 C -0.004 4.004 14 C -0.169 4.169 15 C -0.154 4.154 16 C -0.151 4.151 17 C -0.165 4.165 18 C 0.024 3.976 19 N -0.379 5.379 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.584 5.584 24 Si 0.739 3.261 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.076 0.924 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.233 0.767 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -34.909 20.707 -0.098 40.589 hybrid contribution 1.013 0.637 0.000 1.196 sum -33.896 21.344 -0.098 40.056 Atomic orbital electron populations 1.23242 0.78260 1.04828 1.01333 1.86417 1.21109 1.24814 1.86321 1.19061 0.90913 0.85258 0.91911 1.21133 1.00895 0.90949 1.08061 1.21135 0.92775 0.98963 0.97531 1.17339 0.90900 0.80549 1.07860 1.91532 1.83596 1.42010 1.94356 1.21148 1.00742 0.89985 0.98259 1.19175 0.90965 0.93479 1.11241 1.17818 0.82028 0.88364 0.77294 1.90856 1.71489 1.28373 1.48097 1.45952 1.05840 1.10333 1.76006 1.21467 0.89939 0.86197 1.02802 1.21839 0.92842 0.99474 1.02783 1.21514 0.94908 0.96311 1.02677 1.21499 0.93455 0.98288 1.01894 1.21729 0.95798 0.96930 1.02002 1.20660 0.88924 0.90464 0.97515 1.42390 1.03074 1.02980 1.89471 1.19219 0.82761 0.92581 1.42564 0.91276 1.24749 0.97975 0.95253 1.03156 1.69654 1.34264 0.96552 1.57888 0.86252 0.85586 0.76442 0.77826 1.21294 1.21671 1.21290 0.92347 0.87580 0.92352 0.83624 0.83833 0.83603 0.76705 0.91146 0.91155 0.91243 0.91247 0.91586 0.91592 0.92099 0.92107 0.92089 0.92083 0.96601 0.96599 0.78332 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.28 -2.56 8.57 -40.69 -0.35 -2.91 16 3 C 0.18 1.46 6.70 -38.72 -0.26 1.20 16 4 C -0.19 -1.01 9.03 -39.49 -0.36 -1.37 16 5 C -0.08 -0.43 10.01 -39.47 -0.39 -0.83 16 6 C 0.05 0.34 7.28 -39.49 -0.29 0.06 16 7 F -0.14 -1.01 17.26 2.25 0.04 -0.97 16 8 C -0.08 -0.53 9.51 -39.12 -0.37 -0.90 16 9 C -0.14 -1.25 5.89 -104.85 -0.62 -1.87 16 10 C 0.56 6.01 7.76 -12.47 -0.10 5.92 16 11 O -0.51 -7.48 15.16 -16.61 -0.25 -7.73 16 12 N -0.73 -6.02 5.51 -61.35 -0.34 -6.36 16 13 C 0.12 1.06 5.67 -4.05 -0.02 1.04 16 14 C -0.13 -1.05 5.33 -26.73 -0.14 -1.19 16 15 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 16 C -0.11 -1.40 5.21 -26.73 -0.14 -1.54 16 17 C -0.13 -2.08 5.33 -26.73 -0.14 -2.22 16 18 C 0.15 3.18 6.26 -4.04 -0.03 3.15 16 19 N -0.74 -19.54 5.60 -59.90 -0.34 -19.87 16 20 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 23 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 24 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 28 H 0.06 0.16 7.65 -51.93 -0.40 -0.24 16 29 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.16 7.67 -51.93 -0.40 -0.24 16 31 H 0.15 0.38 6.30 -52.48 -0.33 0.05 16 32 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 33 H 0.15 0.61 6.40 -52.49 -0.34 0.27 16 34 H 0.40 2.18 6.50 -40.82 -0.27 1.91 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.38 10.64 7.67 -40.82 -0.31 10.32 16 48 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 402.76 15.07 6.07 6.07 Total: -1.00 -36.05 402.76 -9.22 -45.27 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.51 Total: 3.43 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.25 Total: -6.48 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.05 Total: -54.52 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.60 Total: -10.64 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.04 Total: -0.97 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.05 -9.22 -45.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179179523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.645 kcal (2) G-P(sol) polarization free energy of solvation -36.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds