Wall clock time and date at job start Tue Mar 31 2020 22:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00441 * 2 1 4 4 H 1.48498 * 109.46926 * 270.00103 * 3 2 1 5 5 H 1.48501 * 109.46851 * 29.99236 * 3 2 1 6 6 H 1.48496 * 109.47428 * 149.99710 * 3 2 1 7 7 C 1.38818 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99504 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00078 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47100 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47189 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47189 * 180.02562 * 12 11 10 14 14 C 1.53007 * 109.46953 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.46953 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47474 * 179.97438 * 15 14 13 17 17 C 1.34771 * 120.00232 * 180.02562 * 16 15 14 18 18 O 1.21593 * 120.00343 * 359.97438 * 17 16 15 19 19 C 1.47527 * 119.99610 * 180.02562 * 17 16 15 20 20 C 1.36597 * 125.76547 * 179.97438 * 19 17 16 21 21 N 1.34820 * 106.83727 * 179.71308 * 20 19 17 22 22 C 1.46495 * 126.59519 * 180.24451 * 21 20 19 23 23 C 1.50697 * 109.47431 * 125.00213 * 22 21 20 24 24 N 1.34772 * 120.00639 * 179.97438 * 23 22 21 25 25 O 1.21284 * 119.99593 * 359.97438 * 23 22 21 26 26 N 1.40214 * 106.80954 * 0.26969 * 21 20 19 27 27 N 1.28759 * 108.36470 * 359.97438 * 26 21 20 28 28 H 0.97003 * 119.99944 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99982 * 359.97438 * 9 7 2 30 30 H 1.08992 * 109.47304 * 60.00008 * 10 9 7 31 31 H 1.08997 * 109.46484 * 299.99476 * 10 9 7 32 32 H 1.09006 * 109.47166 * 59.99859 * 11 10 9 33 33 H 1.08996 * 109.47201 * 300.00138 * 11 10 9 34 34 H 1.08997 * 109.47060 * 59.99761 * 12 11 10 35 35 H 1.09004 * 109.47285 * 300.00048 * 12 11 10 36 36 H 1.09006 * 109.47166 * 60.00195 * 13 12 11 37 37 H 1.08994 * 109.47574 * 300.00092 * 13 12 11 38 38 H 1.08992 * 109.47103 * 60.00293 * 14 13 12 39 39 H 1.08997 * 109.46833 * 299.99671 * 14 13 12 40 40 H 1.09006 * 109.47166 * 60.00196 * 15 14 13 41 41 H 1.08996 * 109.47201 * 300.00475 * 15 14 13 42 42 H 0.97003 * 119.99564 * 0.02562 * 16 15 14 43 43 H 1.08002 * 126.58530 * 359.97438 * 20 19 17 44 44 H 1.09003 * 109.47068 * 245.00542 * 22 21 20 45 45 H 1.09007 * 109.46947 * 5.00303 * 22 21 20 46 46 H 0.97001 * 119.99717 * 0.02562 * 24 23 22 47 47 H 0.96994 * 120.00382 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1120 -2.4711 0.0011 11 6 5.6163 -2.1916 0.0011 12 6 6.3812 -3.5166 0.0017 13 6 7.8854 -3.2370 0.0024 14 6 8.6504 -4.5622 0.0036 15 6 10.1546 -4.2827 0.0036 16 7 10.8872 -5.5514 0.0055 17 6 12.2349 -5.5514 0.0064 18 8 12.8429 -4.4984 0.0051 19 6 12.9724 -6.8291 0.0076 20 6 14.3314 -6.9664 0.0081 21 7 14.5902 -8.2895 0.0158 22 6 15.9122 -8.9208 0.0242 23 6 16.0097 -9.8668 1.1931 24 7 17.1435 -10.5647 1.4026 25 8 15.0678 -10.0002 1.9455 26 7 13.3508 -8.9451 0.0136 27 7 12.4208 -8.0546 0.0057 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3623 0.0007 30 1 3.8490 -3.0424 -0.8891 31 1 3.8483 -3.0427 0.8909 32 1 5.8796 -1.6200 0.8911 33 1 5.8796 -1.6200 -0.8889 34 1 6.1179 -4.0885 -0.8880 35 1 6.1178 -4.0878 0.8919 36 1 8.1484 -2.6653 0.8924 37 1 8.1493 -2.6657 -0.8875 38 1 8.3876 -5.1342 -0.8861 39 1 8.3866 -5.1331 0.8939 40 1 10.4179 -3.7103 0.8932 41 1 10.4181 -3.7118 -0.8867 42 1 10.4021 -6.3914 0.0061 43 1 15.0591 -6.1683 0.0072 44 1 16.0565 -9.4739 -0.9040 45 1 16.6809 -8.1531 0.1129 46 1 17.8969 -10.4578 0.8011 47 1 17.2064 -11.1733 2.1552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180369620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:25 Heat of formation + Delta-G solvation = 19.966657 kcal Electronic energy + Delta-G solvation = -26685.521320 eV Core-core repulsion = 22519.488767 eV Total energy + Delta-G solvation = -4166.032553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.75036 -40.27263 -39.62977 -36.86225 -35.52318 -35.20056 -34.58204 -33.96832 -32.00893 -31.45588 -30.35674 -29.24721 -27.20561 -24.63229 -23.60697 -23.18215 -21.95947 -21.78388 -21.18554 -20.79244 -20.49494 -18.96479 -18.12888 -17.70561 -17.41668 -16.77294 -16.39170 -16.32665 -16.12840 -15.81014 -15.17245 -15.12633 -14.60626 -14.55654 -14.31135 -14.14620 -13.83640 -13.59686 -13.18198 -12.95844 -12.64333 -12.60214 -12.36102 -11.84243 -11.74991 -11.57288 -11.40941 -11.38257 -10.95853 -10.80466 -10.73291 -10.70103 -10.60066 -10.55257 -10.30458 -10.21663 -10.02536 -9.81220 -9.52835 -9.33325 -8.82761 -7.15901 -5.71161 -3.05931 0.57256 1.25955 1.31003 1.63684 2.47049 2.80098 2.94095 3.42413 3.45558 3.49637 3.58210 3.69614 3.84747 3.99157 4.19401 4.43636 4.58031 4.64932 4.72397 4.78548 4.95628 5.22387 5.22633 5.35164 5.39843 5.55152 5.61694 5.62091 5.63875 5.72839 5.87526 5.87909 5.94713 6.09484 6.11992 6.18793 6.28279 6.32347 6.33289 6.45474 6.85586 6.89695 7.10327 7.29440 7.48817 7.83816 8.06422 8.48432 9.28272 10.00903 10.21477 11.47564 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.041034 B = 0.001174 C = 0.001153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.199763 B =23838.334001 C =24270.204485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.759 5.759 10 C 0.156 3.844 11 C -0.130 4.130 12 C -0.114 4.114 13 C -0.116 4.116 14 C -0.132 4.132 15 C 0.118 3.882 16 N -0.714 5.714 17 C 0.605 3.395 18 O -0.540 6.540 19 C -0.099 4.099 20 C 0.095 3.905 21 N -0.358 5.358 22 C 0.103 3.897 23 C 0.504 3.496 24 N -0.849 5.849 25 O -0.508 6.508 26 N -0.031 5.031 27 N -0.205 5.205 28 H 0.259 0.741 29 H 0.360 0.640 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.410 0.590 43 H 0.207 0.793 44 H 0.131 0.869 45 H 0.137 0.863 46 H 0.404 0.596 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 44.871 -22.001 -1.311 49.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.404 5.404 10 C 0.029 3.971 11 C -0.168 4.168 12 C -0.152 4.152 13 C -0.154 4.154 14 C -0.170 4.170 15 C -0.005 4.005 16 N -0.364 5.364 17 C 0.389 3.611 18 O -0.416 6.416 19 C -0.238 4.238 20 C -0.060 4.060 21 N -0.143 5.143 22 C -0.023 4.023 23 C 0.285 3.715 24 N -0.415 5.415 25 O -0.381 6.381 26 N -0.011 5.011 27 N -0.080 5.080 28 H 0.069 0.931 29 H 0.193 0.807 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.245 0.755 43 H 0.224 0.776 44 H 0.149 0.851 45 H 0.155 0.845 46 H 0.233 0.767 47 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 43.644 -22.628 -0.917 49.170 hybrid contribution 1.475 1.418 0.028 2.046 sum 45.119 -21.210 -0.889 49.863 Atomic orbital electron populations 1.69709 1.05116 1.25763 1.57890 1.24677 0.95251 0.97219 1.02162 0.86520 0.79223 0.84898 0.77769 1.21088 1.21735 1.20316 1.19106 0.80789 0.94761 1.42676 0.89260 1.42752 1.04058 1.02446 1.91171 1.20642 0.88958 0.89117 0.98417 1.21781 0.96226 0.97011 1.01825 1.21494 0.93526 0.97943 1.02248 1.21513 0.95248 0.96064 1.02544 1.21839 0.92751 0.99308 1.03136 1.21507 0.91244 0.84968 1.02765 1.45825 1.05729 1.10778 1.74106 1.16714 0.82131 0.85917 0.76354 1.90822 1.68455 1.31317 1.51045 1.21436 0.91606 0.93416 1.17302 1.23344 0.98086 0.86652 0.97926 1.49847 1.08254 1.05308 1.50875 1.21750 0.81208 0.98849 1.00482 1.20321 0.83326 0.81588 0.86254 1.43696 1.16294 1.47235 1.34285 1.90922 1.36701 1.64247 1.46213 1.82152 0.82831 1.15872 1.20258 1.74670 1.24518 0.98615 1.10154 0.93118 0.80729 0.95689 0.95727 0.92162 0.92146 0.91850 0.91859 0.91654 0.91645 0.91051 0.91040 0.91084 0.91056 0.75493 0.77614 0.85081 0.84474 0.76689 0.75725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.24 13.97 55.49 0.78 -29.47 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 3 Si 0.89 22.78 27.74 -169.99 -4.71 18.06 16 4 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 7 C -0.24 -7.21 10.47 -15.06 -0.16 -7.36 16 8 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 9 N -0.76 -19.04 5.41 -59.91 -0.32 -19.36 16 10 C 0.16 3.14 6.26 -4.04 -0.03 3.12 16 11 C -0.13 -2.02 5.33 -26.73 -0.14 -2.17 16 12 C -0.11 -1.37 5.21 -26.73 -0.14 -1.51 16 13 C -0.12 -1.13 5.21 -26.73 -0.14 -1.27 16 14 C -0.13 -1.10 5.33 -26.73 -0.14 -1.24 16 15 C 0.12 1.06 5.67 -4.04 -0.02 1.04 16 16 N -0.71 -6.62 5.55 -61.35 -0.34 -6.96 16 17 C 0.60 6.47 7.82 -12.48 -0.10 6.37 16 18 O -0.54 -7.01 16.86 5.28 0.09 -6.92 16 19 C -0.10 -0.95 6.99 -83.55 -0.58 -1.53 16 20 C 0.10 0.60 11.27 -16.83 -0.19 0.41 16 21 N -0.36 -2.19 3.41 -62.24 -0.21 -2.40 16 22 C 0.10 0.08 7.02 -5.20 -0.04 0.05 16 23 C 0.50 1.86 8.13 -10.99 -0.09 1.77 16 24 N -0.85 0.47 8.87 31.22 0.28 0.75 16 25 O -0.51 -5.08 16.57 5.55 0.09 -4.99 16 26 N -0.03 -0.32 12.89 60.35 0.78 0.46 16 27 N -0.20 -2.22 12.04 32.85 0.40 -1.82 16 28 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 29 H 0.36 8.76 5.53 -40.82 -0.23 8.53 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.41 3.34 8.16 -40.82 -0.33 3.01 16 43 H 0.21 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.13 -0.25 8.14 -51.93 -0.42 -0.68 16 45 H 0.14 -0.48 8.08 -51.92 -0.42 -0.90 16 46 H 0.40 -1.76 8.83 -40.82 -0.36 -2.12 16 47 H 0.41 -0.16 8.93 -40.82 -0.36 -0.53 16 LS Contribution 404.07 15.07 6.09 6.09 Total: -1.00 -42.60 404.07 -6.17 -48.77 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.21 Total: 0.16 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -1.86 Total: -2.36 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 1.35 Total: -58.81 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.18 Total: -11.91 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.71 Total: 18.06 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -42.60 -6.17 -48.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180369620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.736 kcal (2) G-P(sol) polarization free energy of solvation -42.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds