Wall clock time and date at job start Tue Mar 31 2020 22:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00441 * 2 1 4 4 H 1.48498 * 109.46926 * 270.00103 * 3 2 1 5 5 H 1.48501 * 109.46851 * 29.99236 * 3 2 1 6 6 H 1.48496 * 109.47428 * 149.99710 * 3 2 1 7 7 C 1.38818 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99504 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00122 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00078 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47100 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47189 * 179.97438 * 11 10 9 13 13 C 1.53000 * 109.47189 * 180.02562 * 12 11 10 14 14 C 1.53007 * 109.46953 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.46953 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47474 * 179.97438 * 15 14 13 17 17 C 1.34771 * 120.00232 * 180.02562 * 16 15 14 18 18 O 1.21593 * 120.00343 * 359.97438 * 17 16 15 19 19 C 1.47527 * 119.99610 * 180.02562 * 17 16 15 20 20 C 1.36597 * 125.76547 * 179.97438 * 19 17 16 21 21 N 1.34820 * 106.83727 * 179.71308 * 20 19 17 22 22 C 1.46495 * 126.59519 * 180.24451 * 21 20 19 23 23 C 1.50697 * 109.47431 * 125.00213 * 22 21 20 24 24 N 1.34772 * 120.00639 * 179.97438 * 23 22 21 25 25 O 1.21284 * 119.99593 * 359.97438 * 23 22 21 26 26 N 1.40214 * 106.80954 * 0.26969 * 21 20 19 27 27 N 1.28759 * 108.36470 * 359.97438 * 26 21 20 28 28 H 0.97003 * 119.99944 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99982 * 359.97438 * 9 7 2 30 30 H 1.08992 * 109.47304 * 60.00008 * 10 9 7 31 31 H 1.08997 * 109.46484 * 299.99476 * 10 9 7 32 32 H 1.09006 * 109.47166 * 59.99859 * 11 10 9 33 33 H 1.08996 * 109.47201 * 300.00138 * 11 10 9 34 34 H 1.08997 * 109.47060 * 59.99761 * 12 11 10 35 35 H 1.09004 * 109.47285 * 300.00048 * 12 11 10 36 36 H 1.09006 * 109.47166 * 60.00195 * 13 12 11 37 37 H 1.08994 * 109.47574 * 300.00092 * 13 12 11 38 38 H 1.08992 * 109.47103 * 60.00293 * 14 13 12 39 39 H 1.08997 * 109.46833 * 299.99671 * 14 13 12 40 40 H 1.09006 * 109.47166 * 60.00196 * 15 14 13 41 41 H 1.08996 * 109.47201 * 300.00475 * 15 14 13 42 42 H 0.97003 * 119.99564 * 0.02562 * 16 15 14 43 43 H 1.08002 * 126.58530 * 359.97438 * 20 19 17 44 44 H 1.09003 * 109.47068 * 245.00542 * 22 21 20 45 45 H 1.09007 * 109.46947 * 5.00303 * 22 21 20 46 46 H 0.97001 * 119.99717 * 0.02562 * 24 23 22 47 47 H 0.96994 * 120.00382 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1120 -2.4711 0.0011 11 6 5.6163 -2.1916 0.0011 12 6 6.3812 -3.5166 0.0017 13 6 7.8854 -3.2370 0.0024 14 6 8.6504 -4.5622 0.0036 15 6 10.1546 -4.2827 0.0036 16 7 10.8872 -5.5514 0.0055 17 6 12.2349 -5.5514 0.0064 18 8 12.8429 -4.4984 0.0051 19 6 12.9724 -6.8291 0.0076 20 6 14.3314 -6.9664 0.0081 21 7 14.5902 -8.2895 0.0158 22 6 15.9122 -8.9208 0.0242 23 6 16.0097 -9.8668 1.1931 24 7 17.1435 -10.5647 1.4026 25 8 15.0678 -10.0002 1.9455 26 7 13.3508 -8.9451 0.0136 27 7 12.4208 -8.0546 0.0057 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3623 0.0007 30 1 3.8490 -3.0424 -0.8891 31 1 3.8483 -3.0427 0.8909 32 1 5.8796 -1.6200 0.8911 33 1 5.8796 -1.6200 -0.8889 34 1 6.1179 -4.0885 -0.8880 35 1 6.1178 -4.0878 0.8919 36 1 8.1484 -2.6653 0.8924 37 1 8.1493 -2.6657 -0.8875 38 1 8.3876 -5.1342 -0.8861 39 1 8.3866 -5.1331 0.8939 40 1 10.4179 -3.7103 0.8932 41 1 10.4181 -3.7118 -0.8867 42 1 10.4021 -6.3914 0.0061 43 1 15.0591 -6.1683 0.0072 44 1 16.0565 -9.4739 -0.9040 45 1 16.6809 -8.1531 0.1129 46 1 17.8969 -10.4578 0.8011 47 1 17.2064 -11.1733 2.1552 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180369620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:24 Heat of formation + Delta-G solvation = -17.301508 kcal Electronic energy + Delta-G solvation = -26687.137389 eV Core-core repulsion = 22519.488767 eV Total energy + Delta-G solvation = -4167.648622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.29022 -40.66758 -40.30775 -37.96296 -36.83215 -35.69967 -35.25786 -34.77490 -33.67031 -32.30154 -31.63369 -29.66510 -28.40098 -25.86720 -24.49083 -23.93039 -23.22305 -22.25517 -22.19729 -21.93980 -21.12543 -19.62920 -19.37452 -18.35391 -18.01783 -17.16422 -17.12035 -16.97922 -16.71994 -16.59096 -16.31582 -15.97678 -15.79721 -15.65508 -15.24583 -15.00186 -14.88070 -14.74910 -14.14497 -14.07659 -13.81486 -13.47458 -13.32599 -13.14259 -13.01283 -12.65916 -12.46824 -12.38211 -12.07054 -11.88614 -11.85357 -11.84887 -11.79659 -11.56864 -11.31693 -11.19554 -11.07725 -10.96845 -10.76066 -10.45281 -10.05238 -9.30790 -8.04172 -5.38106 0.09515 0.61142 0.96205 1.37846 1.41941 1.43624 1.49590 2.11182 2.21236 2.35510 2.48346 3.15522 3.27163 3.46374 3.58036 3.73126 3.88058 3.92046 3.95082 4.04469 4.07805 4.23954 4.26604 4.30673 4.36074 4.62128 4.62267 4.67576 4.78860 4.87035 4.98271 5.01536 5.06015 5.16686 5.29602 5.29939 5.33909 5.42001 5.54872 5.57597 5.74207 5.78973 6.20511 6.34089 6.38411 6.87610 7.07051 7.10007 7.22093 7.83720 8.03690 9.17637 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.041034 B = 0.001174 C = 0.001153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.199763 B =23838.334001 C =24270.204485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.960 3.040 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.251 1.251 7 C -0.243 4.243 8 H 0.054 0.946 9 N -0.763 5.763 10 C 0.149 3.851 11 C -0.120 4.120 12 C -0.108 4.108 13 C -0.110 4.110 14 C -0.123 4.123 15 C 0.121 3.879 16 N -0.710 5.710 17 C 0.604 3.396 18 O -0.568 6.568 19 C -0.129 4.129 20 C 0.116 3.884 21 N -0.347 5.347 22 C 0.094 3.906 23 C 0.499 3.501 24 N -0.826 5.826 25 O -0.583 6.583 26 N -0.071 5.071 27 N -0.229 5.229 28 H 0.259 0.741 29 H 0.367 0.633 30 H 0.022 0.978 31 H 0.020 0.980 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.414 0.586 43 H 0.246 0.754 44 H 0.165 0.835 45 H 0.191 0.809 46 H 0.425 0.575 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 49.100 -21.460 -1.952 53.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.786 3.214 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.175 1.175 7 C -0.374 4.374 8 H 0.072 0.928 9 N -0.408 5.408 10 C 0.023 3.977 11 C -0.157 4.157 12 C -0.146 4.146 13 C -0.148 4.148 14 C -0.160 4.160 15 C -0.002 4.002 16 N -0.360 5.360 17 C 0.389 3.611 18 O -0.447 6.447 19 C -0.268 4.268 20 C -0.041 4.041 21 N -0.131 5.131 22 C -0.029 4.029 23 C 0.282 3.718 24 N -0.392 5.392 25 O -0.462 6.462 26 N -0.051 5.051 27 N -0.103 5.103 28 H 0.068 0.932 29 H 0.200 0.800 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.250 0.750 43 H 0.262 0.738 44 H 0.183 0.817 45 H 0.208 0.792 46 H 0.258 0.742 47 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 47.978 -22.174 -1.586 52.878 hybrid contribution 0.257 1.091 0.221 1.142 sum 48.235 -21.083 -1.365 52.659 Atomic orbital electron populations 1.69898 1.07242 1.26848 1.59574 1.25575 0.96197 1.01501 1.02321 0.85337 0.78633 0.79116 0.78287 1.20144 1.21950 1.17550 1.19101 0.82943 0.93573 1.41766 0.92840 1.42791 1.02535 1.04497 1.91019 1.20869 0.91800 0.87139 0.97858 1.21692 0.92828 0.99028 1.02197 1.21437 0.94545 0.96018 1.02612 1.21434 0.93622 0.96843 1.02914 1.21726 0.91973 0.98647 1.03694 1.21461 0.91565 0.84793 1.02354 1.45841 1.05620 1.11123 1.73465 1.16899 0.82374 0.86065 0.75748 1.90791 1.68981 1.32265 1.52700 1.21531 0.93059 0.92690 1.19564 1.23931 0.97602 0.87399 0.95181 1.50127 1.08848 1.05285 1.48863 1.22406 0.79802 1.00185 1.00496 1.20850 0.83059 0.81719 0.86175 1.43579 1.15821 1.45606 1.34177 1.90903 1.39363 1.66883 1.49014 1.82049 0.84484 1.16678 1.21910 1.74620 1.25621 0.99187 1.10899 0.93223 0.80024 0.96022 0.96193 0.91876 0.91642 0.91463 0.91649 0.91431 0.91218 0.90386 0.90642 0.91650 0.91326 0.74954 0.73753 0.81749 0.79192 0.74186 0.75697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.98 13.97 21.65 0.30 -64.67 16 2 C -0.06 -3.94 5.50 84.86 0.47 -3.47 16 3 Si 0.96 46.65 27.74 68.60 1.90 48.55 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.25 -11.01 6.52 99.48 0.65 -10.36 16 7 C -0.24 -14.59 10.47 84.04 0.88 -13.71 16 8 H 0.05 3.51 8.06 -2.91 -0.02 3.49 16 9 N -0.76 -37.65 5.41 -343.45 -1.86 -39.51 16 10 C 0.15 5.91 6.26 86.38 0.54 6.46 16 11 C -0.12 -3.46 5.33 30.59 0.16 -3.30 16 12 C -0.11 -2.37 5.21 30.59 0.16 -2.21 16 13 C -0.11 -1.91 5.21 30.60 0.16 -1.76 16 14 C -0.12 -1.83 5.33 30.60 0.16 -1.66 16 15 C 0.12 2.05 5.67 86.38 0.49 2.54 16 16 N -0.71 -12.92 5.55 -466.28 -2.59 -15.51 16 17 C 0.60 12.71 7.82 86.69 0.68 13.39 16 18 O -0.57 -14.40 16.86 -4.01 -0.07 -14.47 16 19 C -0.13 -2.41 6.99 40.82 0.29 -2.12 16 20 C 0.12 1.22 11.27 83.85 0.95 2.17 16 21 N -0.35 -3.63 3.41 -350.83 -1.20 -4.83 16 22 C 0.09 -0.16 7.02 85.63 0.60 0.44 16 23 C 0.50 2.91 8.13 87.66 0.71 3.62 16 24 N -0.83 2.71 8.87 -173.54 -1.54 1.17 16 25 O -0.58 -11.92 16.57 -3.04 -0.05 -11.97 16 26 N -0.07 -1.47 12.89 37.02 0.48 -1.00 16 27 N -0.23 -5.07 12.04 -49.99 -0.60 -5.68 16 28 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 29 H 0.37 17.02 5.53 -92.71 -0.51 16.51 16 30 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.41 6.73 8.16 -92.71 -0.76 5.97 16 43 H 0.25 0.35 8.06 -2.91 -0.02 0.33 16 44 H 0.17 -1.31 8.14 -2.39 -0.02 -1.33 16 45 H 0.19 -2.37 8.08 -2.38 -0.02 -2.39 16 46 H 0.43 -5.10 8.83 -92.71 -0.82 -5.92 16 47 H 0.41 -0.89 8.93 -92.71 -0.83 -1.72 16 Total: -1.00 -97.56 404.07 -0.92 -98.48 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -1.94 Total: 9.05 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 6.25 Total: 0.38 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -7.00 Total: -130.02 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.12 Total: -26.44 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.90 Total: 48.55 kcal Total: -97.56 -0.92 -98.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180369620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.179 kcal (2) G-P(sol) polarization free energy of solvation -97.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds