Wall clock time and date at job start Tue Mar 31 2020 21:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34754 * 117.00320 * 2 1 4 4 O 1.21507 * 119.99429 * 0.02562 * 3 2 1 5 5 C 1.47467 * 120.00477 * 180.02562 * 3 2 1 6 6 C 1.39757 * 120.07387 * 359.97438 * 5 3 2 7 7 C 1.37773 * 119.99722 * 180.02562 * 6 5 3 8 8 C 1.38846 * 120.15416 * 359.72321 * 7 6 5 9 9 O 1.35794 * 119.92610 * 180.30101 * 8 7 6 10 10 C 1.42903 * 116.99768 * 0.24850 * 9 8 7 11 11 C 1.39417 * 120.15426 * 0.55036 * 8 7 6 12 12 O 1.35995 * 120.00424 * 179.72061 * 11 8 7 13 13 C 1.42905 * 117.00438 * 182.22059 * 12 11 8 14 14 H 1.09004 * 109.46677 * 36.43587 * 13 12 11 15 15 C 1.50692 * 109.47266 * 276.43599 * 13 12 11 16 16 H 1.08003 * 120.00087 * 359.97438 * 15 13 12 17 17 C 1.37880 * 120.00376 * 179.97438 * 15 13 12 18 18 N 1.31512 * 119.99427 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00246 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47039 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46933 * 120.00381 * 19 17 15 22 22 H 1.48502 * 109.47249 * 239.99979 * 19 17 15 23 23 C 1.53003 * 109.47155 * 156.43355 * 13 12 11 24 24 N 1.46901 * 109.47257 * 294.17657 * 23 13 12 25 25 C 1.46904 * 109.46746 * 59.63234 * 24 23 13 26 26 C 1.46897 * 109.47151 * 179.63326 * 24 23 13 27 27 C 1.46900 * 109.47068 * 299.63722 * 24 23 13 28 28 C 1.38120 * 119.99550 * 359.45187 * 11 8 7 29 29 H 1.08993 * 109.47669 * 59.99326 * 1 2 3 30 30 H 1.09003 * 109.47023 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46900 * 299.99302 * 1 2 3 32 32 H 1.08001 * 120.00278 * 0.04183 * 6 5 3 33 33 H 1.08002 * 119.92245 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47110 * 300.00644 * 10 9 8 35 35 H 1.09002 * 109.46448 * 60.00310 * 10 9 8 36 36 H 1.08998 * 109.47188 * 180.02562 * 10 9 8 37 37 H 0.97004 * 119.99833 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.47069 * 174.17734 * 23 13 12 39 39 H 1.09003 * 109.47161 * 54.17938 * 23 13 12 40 40 H 1.08993 * 109.47330 * 50.92794 * 25 24 23 41 41 H 1.09003 * 109.46687 * 170.92929 * 25 24 23 42 42 H 1.08994 * 109.47197 * 290.92461 * 25 24 23 43 43 H 1.08992 * 109.47428 * 59.99946 * 26 24 23 44 44 H 1.08998 * 109.46874 * 180.02562 * 26 24 23 45 45 H 1.09008 * 109.46898 * 300.00097 * 26 24 23 46 46 H 1.08997 * 109.47556 * 60.47019 * 27 24 23 47 47 H 1.09004 * 109.47071 * 180.47889 * 27 24 23 48 48 H 1.09006 * 109.46861 * 300.47061 * 27 24 23 49 49 H 1.08009 * 120.07233 * 180.24967 * 28 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5364 1.2778 -0.0006 6 6 4.2992 0.1067 -0.0006 7 6 5.6749 0.1807 -0.0006 8 6 6.3069 1.4170 -0.0064 9 8 7.6631 1.4845 -0.0125 10 6 8.3743 0.2450 -0.0182 11 6 5.5523 2.5893 -0.0006 12 8 6.1745 3.7986 -0.0006 13 6 5.3403 4.9575 0.0548 14 1 4.4813 4.7565 0.6950 15 6 4.8634 5.2999 -1.3331 16 1 5.1672 4.6935 -2.1735 17 6 4.0390 6.3875 -1.5301 18 7 3.6694 7.1263 -0.5068 19 14 3.4484 6.8123 -3.2506 20 1 4.0023 5.8332 -4.2199 21 1 1.9647 6.7629 -3.2908 22 1 3.9080 8.1783 -3.6085 23 6 6.1372 6.1328 0.6247 24 7 6.4830 5.8566 2.0254 25 6 7.2868 4.6292 2.0985 26 6 7.2556 6.9811 2.5699 27 6 5.2523 5.6832 2.8085 28 6 4.1727 2.5225 -0.0006 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.8102 -0.8562 -0.0008 33 1 6.2631 -0.7250 -0.0010 34 1 8.1135 -0.3276 0.8719 35 1 8.1053 -0.3240 -0.9081 36 1 9.4465 0.4413 -0.0223 37 1 3.0892 7.8912 -0.6453 38 1 5.5353 7.0399 0.5711 39 1 7.0503 6.2679 0.0448 40 1 8.1154 4.6950 1.3935 41 1 7.6779 4.5107 3.1090 42 1 6.6634 3.7711 1.8473 43 1 6.6592 7.8918 2.5157 44 1 7.5125 6.7759 3.6091 45 1 8.1688 7.1097 1.9888 46 1 4.6830 4.8436 2.4098 47 1 5.5087 5.4867 3.8496 48 1 4.6518 6.5910 2.7474 49 1 3.5869 3.4300 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226274102.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:30 Heat of formation + Delta-G solvation = -20.527313 kcal Electronic energy + Delta-G solvation = -31786.600294 eV Core-core repulsion = 27605.996460 eV Total energy + Delta-G solvation = -4180.603834 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.31577 -41.63350 -40.81423 -39.37692 -37.78787 -37.04794 -34.95424 -32.04882 -31.53832 -30.70448 -30.26971 -30.12482 -28.95497 -27.91587 -27.78650 -25.14663 -24.58841 -23.89159 -22.12067 -21.70943 -19.73910 -19.18550 -18.80180 -18.43719 -18.15056 -17.94362 -17.74527 -17.20852 -17.12861 -16.98641 -16.80143 -15.85564 -15.67776 -15.45970 -15.23387 -14.81520 -14.78225 -14.66023 -14.22791 -14.16164 -14.06159 -13.92261 -13.84851 -13.71649 -13.54530 -13.51163 -13.25821 -13.11286 -12.83792 -12.76137 -12.34046 -12.13559 -12.07200 -11.98028 -11.86025 -11.57750 -11.47754 -11.28177 -10.87390 -10.11040 -9.71540 -8.79417 -7.86834 -5.97798 -0.17010 0.39709 0.41393 1.72586 1.86518 2.09657 2.20351 2.22446 2.29120 2.31537 2.42465 2.44269 2.55722 2.84582 3.02498 3.26433 3.28938 3.50667 3.52982 3.68590 3.72552 3.77640 3.78280 3.82914 3.90375 3.99462 4.03010 4.11978 4.15565 4.17441 4.21818 4.28275 4.31024 4.34282 4.34524 4.41177 4.50599 4.71488 4.79814 4.84036 4.98349 5.18454 5.22946 5.39482 5.58363 5.65541 6.06081 6.09713 6.25545 6.61898 6.98689 7.22754 7.81461 9.18919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.507 3.493 4 O -0.497 6.497 5 C -0.130 4.130 6 C -0.058 4.058 7 C -0.194 4.194 8 C 0.127 3.873 9 O -0.303 6.303 10 C 0.023 3.977 11 C 0.099 3.901 12 O -0.316 6.316 13 C 0.195 3.805 14 H 0.054 0.946 15 C -0.545 4.545 16 H 0.083 0.917 17 C 0.077 3.923 18 N -0.893 5.893 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.275 1.275 23 C -0.005 4.005 24 N -0.271 5.271 25 C -0.041 4.041 26 C -0.040 4.040 27 C -0.040 4.040 28 C -0.094 4.094 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.282 0.718 38 H 0.167 0.833 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.129 0.871 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.113 0.887 46 H 0.116 0.884 47 H 0.106 0.894 48 H 0.123 0.877 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.967 -3.553 12.868 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.352 3.648 4 O -0.385 6.385 5 C -0.132 4.132 6 C -0.076 4.076 7 C -0.212 4.212 8 C 0.081 3.919 9 O -0.216 6.216 10 C -0.072 4.072 11 C 0.054 3.946 12 O -0.231 6.231 13 C 0.140 3.860 14 H 0.071 0.929 15 C -0.582 4.582 16 H 0.101 0.899 17 C -0.128 4.128 18 N -0.530 5.530 19 Si 0.737 3.263 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.200 1.200 23 C -0.124 4.124 24 N 0.071 4.929 25 C -0.182 4.182 26 C -0.182 4.182 27 C -0.182 4.182 28 C -0.113 4.113 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.184 0.816 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.117 0.883 42 H 0.147 0.853 43 H 0.134 0.866 44 H 0.127 0.873 45 H 0.131 0.869 46 H 0.135 0.865 47 H 0.125 0.875 48 H 0.141 0.859 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 9.955 -2.863 12.894 16.540 hybrid contribution -0.817 0.129 -1.024 1.316 sum 9.138 -2.734 11.871 15.228 Atomic orbital electron populations 1.23297 0.75748 1.03820 1.02835 1.86525 1.23716 1.32678 1.84555 1.21088 0.89063 0.81535 0.73106 1.90900 1.66664 1.35848 1.45134 1.18769 0.89144 0.94153 1.11097 1.21148 0.92843 0.98144 0.95476 1.21016 0.95425 0.96050 1.08752 1.18626 0.82875 0.91694 0.98740 1.86111 1.14774 1.32551 1.88194 1.23148 0.97056 0.85324 1.01648 1.17741 0.89500 0.84367 1.03026 1.86075 1.36808 1.12021 1.88219 1.20531 0.87819 0.78205 0.99431 0.92909 1.21405 1.30597 1.14182 0.91987 0.89912 1.24949 0.93842 0.94804 0.99229 1.69490 1.34542 1.18093 1.30831 0.86131 0.79503 0.78967 0.81715 1.18970 1.19807 1.19988 1.25029 1.05253 1.07536 0.74594 1.46328 1.14563 1.14433 1.17571 1.24318 0.99978 0.87737 1.06199 1.23995 1.00033 0.90922 1.03258 1.24043 0.86913 1.09446 0.97772 1.21458 0.92738 0.98819 0.98268 0.91659 0.87901 0.91769 0.84146 0.84074 0.92448 0.92273 0.87982 0.90831 0.81627 0.86881 0.86477 0.88279 0.85317 0.86555 0.87281 0.86853 0.86539 0.87517 0.85871 0.81647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.04 10.57 101.05 1.07 1.11 16 2 O -0.36 -1.21 9.80 -40.64 -0.40 -1.60 16 3 C 0.51 2.67 7.89 34.49 0.27 2.94 16 4 O -0.50 -4.14 16.13 -19.27 -0.31 -4.45 16 5 C -0.13 -0.47 5.87 -104.99 -0.62 -1.09 16 6 C -0.06 -0.07 9.60 -39.18 -0.38 -0.45 16 7 C -0.19 -0.01 9.01 -39.53 -0.36 -0.36 16 8 C 0.13 0.14 6.71 -38.92 -0.26 -0.12 16 9 O -0.30 -0.03 10.26 -33.76 -0.35 -0.38 16 10 C 0.02 -0.07 9.81 101.05 0.99 0.92 16 11 C 0.10 0.23 5.94 -39.19 -0.23 0.00 16 12 O -0.32 -0.44 6.45 -34.39 -0.22 -0.67 16 13 C 0.20 0.41 1.23 -27.88 -0.03 0.37 16 14 H 0.05 0.13 4.11 -51.93 -0.21 -0.08 16 15 C -0.54 -4.27 7.99 -34.44 -0.28 -4.55 16 16 H 0.08 0.85 7.81 -52.48 -0.41 0.44 16 17 C 0.08 0.71 5.29 -17.82 -0.09 0.61 16 18 N -0.89 -7.42 11.29 55.43 0.63 -6.79 16 19 Si 0.91 8.74 29.54 -169.99 -5.02 3.72 16 20 H -0.27 -2.78 7.11 56.52 0.40 -2.38 16 21 H -0.27 -2.99 7.11 56.52 0.40 -2.59 16 22 H -0.27 -2.70 7.11 56.52 0.40 -2.30 16 23 C -0.01 0.01 3.64 -3.82 -0.01 0.00 16 24 N -0.27 2.25 0.05 -395.62 -0.02 2.23 16 25 C -0.04 0.34 6.92 60.07 0.42 0.76 16 26 C -0.04 0.45 8.01 60.06 0.48 0.93 16 27 C -0.04 0.33 7.65 60.06 0.46 0.79 16 28 C -0.09 -0.37 8.26 -39.05 -0.32 -0.69 16 29 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.10 -0.18 8.14 -51.93 -0.42 -0.61 16 31 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.14 -0.05 7.60 -52.49 -0.40 -0.45 16 33 H 0.14 -0.36 6.27 -52.49 -0.33 -0.69 16 34 H 0.06 -0.26 7.64 -51.93 -0.40 -0.66 16 35 H 0.06 -0.20 7.66 -51.93 -0.40 -0.59 16 36 H 0.10 -0.48 8.14 -51.93 -0.42 -0.90 16 37 H 0.28 2.50 8.31 -40.82 -0.34 2.16 16 38 H 0.17 -0.08 5.94 -51.93 -0.31 -0.39 16 39 H 0.11 -0.33 8.08 -51.93 -0.42 -0.75 16 40 H 0.12 -0.93 8.00 -51.93 -0.42 -1.34 16 41 H 0.10 -1.11 8.01 -51.93 -0.42 -1.53 16 42 H 0.13 -0.74 5.05 -51.93 -0.26 -1.00 16 43 H 0.12 -1.27 8.14 -51.93 -0.42 -1.70 16 44 H 0.11 -1.44 8.07 -51.93 -0.42 -1.86 16 45 H 0.11 -1.32 8.14 -51.92 -0.42 -1.74 16 46 H 0.12 -0.69 5.99 -51.93 -0.31 -1.00 16 47 H 0.11 -1.20 8.14 -51.93 -0.42 -1.62 16 48 H 0.12 -0.93 8.14 -51.93 -0.42 -1.35 16 49 H 0.17 1.00 5.26 -52.48 -0.28 0.73 16 LS Contribution 388.16 15.07 5.85 5.85 Total: 0.00 -17.55 388.16 -6.23 -23.77 By element: Atomic # 1 Polarization: -15.38 SS G_CDS: -7.49 Total: -22.87 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 1.10 Total: 1.18 kcal Atomic # 7 Polarization: -5.17 SS G_CDS: 0.61 Total: -4.56 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -1.28 Total: -7.10 kcal Atomic # 14 Polarization: 8.74 SS G_CDS: -5.02 Total: 3.72 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -17.55 -6.23 -23.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226274102.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.246 kcal (2) G-P(sol) polarization free energy of solvation -17.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds