Wall clock time and date at job start Tue Mar 31 2020 21:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34754 * 117.00320 * 2 1 4 4 O 1.21507 * 119.99429 * 0.02562 * 3 2 1 5 5 C 1.47467 * 120.00477 * 180.02562 * 3 2 1 6 6 C 1.39757 * 120.07387 * 359.97438 * 5 3 2 7 7 C 1.37773 * 119.99722 * 180.02562 * 6 5 3 8 8 C 1.38846 * 120.15416 * 359.72321 * 7 6 5 9 9 O 1.35794 * 119.92610 * 180.30101 * 8 7 6 10 10 C 1.42903 * 116.99768 * 0.24850 * 9 8 7 11 11 C 1.39417 * 120.15426 * 0.55036 * 8 7 6 12 12 O 1.35995 * 120.00424 * 179.72061 * 11 8 7 13 13 C 1.42905 * 117.00438 * 182.22059 * 12 11 8 14 14 H 1.09004 * 109.46677 * 36.43587 * 13 12 11 15 15 C 1.50692 * 109.47266 * 276.43599 * 13 12 11 16 16 H 1.08003 * 120.00087 * 359.97438 * 15 13 12 17 17 C 1.37880 * 120.00376 * 179.97438 * 15 13 12 18 18 N 1.31512 * 119.99427 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 120.00246 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47039 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46933 * 120.00381 * 19 17 15 22 22 H 1.48502 * 109.47249 * 239.99979 * 19 17 15 23 23 C 1.53003 * 109.47155 * 156.43355 * 13 12 11 24 24 N 1.46901 * 109.47257 * 294.17657 * 23 13 12 25 25 C 1.46904 * 109.46746 * 59.63234 * 24 23 13 26 26 C 1.46897 * 109.47151 * 179.63326 * 24 23 13 27 27 C 1.46900 * 109.47068 * 299.63722 * 24 23 13 28 28 C 1.38120 * 119.99550 * 359.45187 * 11 8 7 29 29 H 1.08993 * 109.47669 * 59.99326 * 1 2 3 30 30 H 1.09003 * 109.47023 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46900 * 299.99302 * 1 2 3 32 32 H 1.08001 * 120.00278 * 0.04183 * 6 5 3 33 33 H 1.08002 * 119.92245 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47110 * 300.00644 * 10 9 8 35 35 H 1.09002 * 109.46448 * 60.00310 * 10 9 8 36 36 H 1.08998 * 109.47188 * 180.02562 * 10 9 8 37 37 H 0.97004 * 119.99833 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.47069 * 174.17734 * 23 13 12 39 39 H 1.09003 * 109.47161 * 54.17938 * 23 13 12 40 40 H 1.08993 * 109.47330 * 50.92794 * 25 24 23 41 41 H 1.09003 * 109.46687 * 170.92929 * 25 24 23 42 42 H 1.08994 * 109.47197 * 290.92461 * 25 24 23 43 43 H 1.08992 * 109.47428 * 59.99946 * 26 24 23 44 44 H 1.08998 * 109.46874 * 180.02562 * 26 24 23 45 45 H 1.09008 * 109.46898 * 300.00097 * 26 24 23 46 46 H 1.08997 * 109.47556 * 60.47019 * 27 24 23 47 47 H 1.09004 * 109.47071 * 180.47889 * 27 24 23 48 48 H 1.09006 * 109.46861 * 300.47061 * 27 24 23 49 49 H 1.08009 * 120.07233 * 180.24967 * 28 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5364 1.2778 -0.0006 6 6 4.2992 0.1067 -0.0006 7 6 5.6749 0.1807 -0.0006 8 6 6.3069 1.4170 -0.0064 9 8 7.6631 1.4845 -0.0125 10 6 8.3743 0.2450 -0.0182 11 6 5.5523 2.5893 -0.0006 12 8 6.1745 3.7986 -0.0006 13 6 5.3403 4.9575 0.0548 14 1 4.4813 4.7565 0.6950 15 6 4.8634 5.2999 -1.3331 16 1 5.1672 4.6935 -2.1735 17 6 4.0390 6.3875 -1.5301 18 7 3.6694 7.1263 -0.5068 19 14 3.4484 6.8123 -3.2506 20 1 4.0023 5.8332 -4.2199 21 1 1.9647 6.7629 -3.2908 22 1 3.9080 8.1783 -3.6085 23 6 6.1372 6.1328 0.6247 24 7 6.4830 5.8566 2.0254 25 6 7.2868 4.6292 2.0985 26 6 7.2556 6.9811 2.5699 27 6 5.2523 5.6832 2.8085 28 6 4.1727 2.5225 -0.0006 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.8102 -0.8562 -0.0008 33 1 6.2631 -0.7250 -0.0010 34 1 8.1135 -0.3276 0.8719 35 1 8.1053 -0.3240 -0.9081 36 1 9.4465 0.4413 -0.0223 37 1 3.0892 7.8912 -0.6453 38 1 5.5353 7.0399 0.5711 39 1 7.0503 6.2679 0.0448 40 1 8.1154 4.6950 1.3935 41 1 7.6779 4.5107 3.1090 42 1 6.6634 3.7711 1.8473 43 1 6.6592 7.8918 2.5157 44 1 7.5125 6.7759 3.6091 45 1 8.1688 7.1097 1.9888 46 1 4.6830 4.8436 2.4098 47 1 5.5087 5.4867 3.8496 48 1 4.6518 6.5910 2.7474 49 1 3.5869 3.4300 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226274102.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:29 Heat of formation + Delta-G solvation = -24.117115 kcal Electronic energy + Delta-G solvation = -31786.755960 eV Core-core repulsion = 27605.996460 eV Total energy + Delta-G solvation = -4180.759500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.88143 -41.78147 -41.02200 -39.39344 -37.92434 -37.39731 -35.45202 -32.21111 -31.66600 -30.75081 -29.59169 -29.44255 -28.95339 -27.97745 -27.84970 -25.19163 -24.69553 -23.70806 -22.26661 -21.85661 -19.90449 -19.29412 -18.83627 -18.25376 -18.02644 -17.81409 -17.51495 -17.43942 -17.34017 -17.01305 -16.75699 -16.41303 -15.74343 -15.55828 -15.17707 -14.93750 -14.51000 -14.37141 -14.26458 -14.17717 -13.83159 -13.59301 -13.44550 -13.32920 -13.22160 -13.17697 -13.11863 -13.10692 -13.06178 -12.88251 -12.80324 -12.48867 -12.40696 -12.11924 -12.01489 -11.92967 -11.86856 -11.67127 -11.33909 -10.76545 -9.85330 -8.94644 -8.53195 -6.61515 -0.38806 0.28893 0.98327 1.26687 1.40159 1.42148 1.44436 1.63473 2.13954 2.24298 2.28908 2.66493 2.77333 3.01906 3.08885 3.15525 3.67713 3.76250 3.85272 3.99199 4.07024 4.08477 4.18490 4.22649 4.26878 4.27979 4.28298 4.30357 4.46040 4.46589 4.49325 4.50975 4.60566 4.64431 4.67304 4.71517 4.78215 4.79252 4.84633 4.88398 4.93276 5.10581 5.16523 5.24167 5.29130 5.46356 5.53292 5.68676 6.01162 6.37754 6.62827 6.66768 7.14215 8.47748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.507 3.493 4 O -0.542 6.542 5 C -0.153 4.153 6 C -0.048 4.048 7 C -0.185 4.185 8 C 0.136 3.864 9 O -0.312 6.312 10 C 0.012 3.988 11 C 0.089 3.911 12 O -0.305 6.305 13 C 0.198 3.802 14 H 0.048 0.952 15 C -0.549 4.549 16 H 0.050 0.950 17 C 0.060 3.940 18 N -0.889 5.889 19 Si 0.923 3.077 20 H -0.282 1.282 21 H -0.295 1.295 22 H -0.273 1.273 23 C 0.016 3.984 24 N -0.258 5.258 25 C -0.042 4.042 26 C -0.042 4.042 27 C -0.043 4.043 28 C -0.109 4.109 29 H 0.055 0.945 30 H 0.137 0.863 31 H 0.062 0.938 32 H 0.160 0.840 33 H 0.176 0.824 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.119 0.881 37 H 0.275 0.725 38 H 0.148 0.852 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.141 0.859 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.143 0.857 45 H 0.122 0.878 46 H 0.087 0.913 47 H 0.149 0.851 48 H 0.114 0.886 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.901 -5.156 15.363 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.354 3.646 4 O -0.434 6.434 5 C -0.155 4.155 6 C -0.066 4.066 7 C -0.204 4.204 8 C 0.089 3.911 9 O -0.225 6.225 10 C -0.082 4.082 11 C 0.043 3.957 12 O -0.220 6.220 13 C 0.143 3.857 14 H 0.065 0.935 15 C -0.587 4.587 16 H 0.069 0.931 17 C -0.144 4.144 18 N -0.526 5.526 19 Si 0.752 3.248 20 H -0.207 1.207 21 H -0.222 1.222 22 H -0.198 1.198 23 C -0.105 4.105 24 N 0.084 4.916 25 C -0.183 4.183 26 C -0.183 4.183 27 C -0.184 4.184 28 C -0.128 4.128 29 H 0.074 0.926 30 H 0.155 0.845 31 H 0.081 0.919 32 H 0.178 0.822 33 H 0.193 0.807 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.085 0.915 38 H 0.166 0.834 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.159 0.841 42 H 0.119 0.881 43 H 0.132 0.868 44 H 0.162 0.838 45 H 0.140 0.860 46 H 0.106 0.894 47 H 0.167 0.833 48 H 0.133 0.867 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.915 -4.483 15.398 20.591 hybrid contribution -1.657 0.465 -1.801 2.491 sum 11.258 -4.018 13.597 18.105 Atomic orbital electron populations 1.23564 0.74541 1.05903 1.02378 1.86518 1.24954 1.31536 1.84020 1.21487 0.89803 0.81410 0.71920 1.90870 1.67684 1.37264 1.47573 1.18811 0.88443 0.95023 1.13185 1.21359 0.93336 0.97805 0.94082 1.21362 0.95042 0.96807 1.07166 1.18693 0.83641 0.91389 0.97357 1.86112 1.13948 1.34745 1.87662 1.23470 0.97600 0.84317 1.02770 1.17861 0.89114 0.85287 1.03424 1.86111 1.35972 1.11656 1.88263 1.20283 0.89125 0.79876 0.96428 0.93467 1.21485 1.30331 1.12794 0.94072 0.93127 1.24962 0.94949 0.95919 0.98593 1.69528 1.35131 1.18144 1.29835 0.86025 0.77790 0.78440 0.82593 1.20726 1.22194 1.19832 1.24176 1.04562 1.03450 0.78332 1.45970 1.15186 1.15974 1.14439 1.24347 0.98990 0.86278 1.08723 1.24225 0.99588 0.89345 1.05094 1.24107 0.86772 1.07849 0.99702 1.21202 0.93427 0.98018 1.00121 0.92600 0.84454 0.91877 0.82248 0.80697 0.90488 0.91863 0.86329 0.91488 0.83434 0.86137 0.86618 0.84088 0.88096 0.86787 0.83835 0.85955 0.89420 0.83299 0.86717 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 10.57 113.37 1.20 1.29 16 2 O -0.35 -2.78 9.80 -56.64 -0.56 -3.33 16 3 C 0.51 6.68 7.89 70.25 0.55 7.24 16 4 O -0.54 -11.22 16.13 19.81 0.32 -10.90 16 5 C -0.15 -1.42 5.87 -20.10 -0.12 -1.54 16 6 C -0.05 -0.10 9.60 22.53 0.22 0.12 16 7 C -0.19 0.26 9.01 22.31 0.20 0.47 16 8 C 0.14 0.24 6.71 22.70 0.15 0.40 16 9 O -0.31 0.39 10.26 -77.22 -0.79 -0.41 16 10 C 0.01 -0.11 9.81 113.37 1.11 1.00 16 11 C 0.09 0.56 5.94 22.53 0.13 0.69 16 12 O -0.30 -1.35 6.45 -79.47 -0.51 -1.86 16 13 C 0.20 1.32 1.23 29.85 0.04 1.36 16 14 H 0.05 0.41 4.11 -2.38 -0.01 0.40 16 15 C -0.55 -10.59 7.99 25.60 0.20 -10.38 16 16 H 0.05 1.26 7.81 -2.91 -0.02 1.24 16 17 C 0.06 1.30 5.29 84.66 0.45 1.75 16 18 N -0.89 -17.36 11.29 21.45 0.24 -17.12 16 19 Si 0.92 21.04 29.54 68.60 2.03 23.07 16 20 H -0.28 -7.04 7.11 99.48 0.71 -6.33 16 21 H -0.30 -7.70 7.11 99.48 0.71 -7.00 16 22 H -0.27 -6.04 7.11 99.48 0.71 -5.33 16 23 C 0.02 -0.07 3.64 86.30 0.31 0.24 16 24 N -0.26 4.50 0.05 ******* -0.07 4.43 16 25 C -0.04 0.78 6.92 127.69 0.88 1.66 16 26 C -0.04 1.05 8.01 127.69 1.02 2.07 16 27 C -0.04 0.71 7.65 127.69 0.98 1.69 16 28 C -0.11 -1.20 8.26 22.62 0.19 -1.01 16 29 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.14 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.16 -0.33 7.60 -2.91 -0.02 -0.35 16 33 H 0.18 -1.48 6.27 -2.91 -0.02 -1.49 16 34 H 0.08 -0.96 7.64 -2.39 -0.02 -0.98 16 35 H 0.06 -0.59 7.66 -2.39 -0.02 -0.60 16 36 H 0.12 -1.44 8.14 -2.39 -0.02 -1.45 16 37 H 0.28 5.65 8.31 -92.71 -0.77 4.88 16 38 H 0.15 0.08 5.94 -2.39 -0.01 0.06 16 39 H 0.12 -0.67 8.08 -2.39 -0.02 -0.69 16 40 H 0.12 -2.02 8.00 -2.39 -0.02 -2.03 16 41 H 0.14 -3.70 8.01 -2.39 -0.02 -3.72 16 42 H 0.10 -1.17 5.05 -2.39 -0.01 -1.18 16 43 H 0.11 -2.66 8.14 -2.39 -0.02 -2.68 16 44 H 0.14 -4.41 8.07 -2.39 -0.02 -4.43 16 45 H 0.12 -3.15 8.14 -2.38 -0.02 -3.17 16 46 H 0.09 -0.87 5.99 -2.39 -0.01 -0.88 16 47 H 0.15 -3.71 8.14 -2.38 -0.02 -3.73 16 48 H 0.11 -1.65 8.14 -2.38 -0.02 -1.67 16 49 H 0.13 2.31 5.26 -2.91 -0.02 2.29 16 Total: 0.00 -47.23 388.16 9.13 -38.10 By element: Atomic # 1 Polarization: -39.97 SS G_CDS: 0.95 Total: -39.01 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 7.52 Total: 7.04 kcal Atomic # 7 Polarization: -12.87 SS G_CDS: 0.17 Total: -12.69 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -1.54 Total: -16.50 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: 2.03 Total: 23.07 kcal Total: -47.23 9.13 -38.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226274102.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.982 kcal (2) G-P(sol) polarization free energy of solvation -47.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds