Wall clock time and date at job start Tue Mar 31 2020 21:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34752 * 116.99807 * 2 1 4 4 O 1.21510 * 119.99773 * 0.02562 * 3 2 1 5 5 C 1.47474 * 120.00111 * 180.02562 * 3 2 1 6 6 C 1.39760 * 120.07590 * 359.97438 * 5 3 2 7 7 C 1.37760 * 119.99839 * 179.97438 * 6 5 3 8 8 C 1.38854 * 120.15678 * 0.02562 * 7 6 5 9 9 O 1.35786 * 119.92429 * 179.97438 * 8 7 6 10 10 C 1.42899 * 116.99840 * 5.91441 * 9 8 7 11 11 H 1.09000 * 109.47413 * 35.35570 * 10 9 8 12 12 C 1.50699 * 109.47338 * 275.35038 * 10 9 8 13 13 H 1.08003 * 119.99514 * 123.35018 * 12 10 9 14 14 C 1.37874 * 120.00362 * 303.35528 * 12 10 9 15 15 N 1.31513 * 119.99766 * 358.05984 * 14 12 10 16 16 Si 1.86792 * 120.00186 * 178.06055 * 14 12 10 17 17 H 1.48503 * 109.47254 * 94.99205 * 16 14 12 18 18 H 1.48503 * 109.47211 * 214.99105 * 16 14 12 19 19 H 1.48504 * 109.47327 * 334.98809 * 16 14 12 20 20 C 1.53003 * 109.46843 * 155.35402 * 10 9 8 21 21 N 1.46898 * 109.47384 * 294.29641 * 20 10 9 22 22 C 1.46901 * 109.47019 * 63.96080 * 21 20 10 23 23 C 1.46896 * 109.47580 * 183.96644 * 21 20 10 24 24 C 1.46903 * 109.47215 * 303.96574 * 21 20 10 25 25 C 1.39415 * 120.14936 * 0.25287 * 8 7 6 26 26 O 1.36004 * 119.99935 * 179.70267 * 25 8 7 27 27 C 1.42900 * 116.99998 * 179.97438 * 26 25 8 28 28 C 1.38115 * 120.00244 * 359.45009 * 25 8 7 29 29 H 1.08996 * 109.47285 * 59.99748 * 1 2 3 30 30 H 1.08998 * 109.46995 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47098 * 299.99772 * 1 2 3 32 32 H 1.08001 * 119.99888 * 359.95586 * 6 5 3 33 33 H 1.08004 * 119.92051 * 180.02562 * 7 6 5 34 34 H 0.96996 * 120.00333 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.47261 * 54.29972 * 20 10 9 36 36 H 1.09002 * 109.47228 * 174.29457 * 20 10 9 37 37 H 1.09000 * 109.46580 * 51.27655 * 22 21 20 38 38 H 1.09004 * 109.47138 * 171.26777 * 22 21 20 39 39 H 1.08992 * 109.47387 * 291.27347 * 22 21 20 40 40 H 1.08997 * 109.47275 * 59.99776 * 23 21 20 41 41 H 1.08997 * 109.47833 * 180.02562 * 23 21 20 42 42 H 1.09009 * 109.46925 * 300.00335 * 23 21 20 43 43 H 1.08999 * 109.47052 * 59.99455 * 24 21 20 44 44 H 1.08998 * 109.47637 * 179.97438 * 24 21 20 45 45 H 1.09005 * 109.47215 * 299.99814 * 24 21 20 46 46 H 1.08999 * 109.47552 * 299.99825 * 27 26 25 47 47 H 1.09004 * 109.46895 * 60.00472 * 27 26 25 48 48 H 1.09007 * 109.46644 * 180.02562 * 27 26 25 49 49 H 1.07999 * 120.07956 * 180.27339 * 28 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2007 0.0000 4 8 1.4018 2.2197 0.0005 5 6 3.5364 1.2779 -0.0006 6 6 4.2992 0.1069 -0.0006 7 6 5.6748 0.1809 -0.0016 8 6 6.3068 1.4172 -0.0022 9 8 7.6630 1.4847 -0.0027 10 6 8.3738 0.2520 -0.1339 11 1 7.8242 -0.4155 -0.7976 12 6 8.5165 -0.3922 1.2210 13 1 8.1465 -1.3937 1.3843 14 6 9.1194 0.2967 2.2519 15 7 9.6040 1.5013 2.0429 16 14 9.2478 -0.4808 3.9455 17 1 10.5694 -1.1429 4.0873 18 1 9.1068 0.5705 4.9848 19 1 8.1692 -1.4880 4.1109 20 6 9.7616 0.5232 -0.7183 21 7 9.6249 1.0242 -2.0924 22 6 8.9275 2.3170 -2.0751 23 6 10.9575 1.1946 -2.6864 24 6 8.8527 0.0620 -2.8899 25 6 5.5521 2.5894 0.0037 26 8 6.1744 3.7988 0.0092 27 6 5.3390 4.9582 0.0145 28 6 4.1726 2.5227 -0.0014 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.8102 -0.8561 0.0006 33 1 6.2631 -0.7249 -0.0021 34 1 10.0284 1.9859 2.7680 35 1 10.2731 1.2684 -0.1091 36 1 10.3402 -0.4005 -0.7242 37 1 9.4140 2.9827 -1.3623 38 1 8.9621 2.7619 -3.0697 39 1 7.8890 2.1658 -1.7807 40 1 11.4750 0.2354 -2.6993 41 1 10.8562 1.5668 -3.7059 42 1 11.5305 1.9086 -2.0946 43 1 7.8639 -0.0644 -2.4492 44 1 8.7509 0.4339 -3.9094 45 1 9.3702 -0.8973 -2.9028 46 1 4.7098 4.9567 -0.8755 47 1 4.7098 4.9485 0.9045 48 1 5.9605 5.8537 0.0182 49 1 3.5868 3.4300 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228213655.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:37 Heat of formation + Delta-G solvation = -21.558124 kcal Electronic energy + Delta-G solvation = -31634.824612 eV Core-core repulsion = 27454.176079 eV Total energy + Delta-G solvation = -4180.648533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.79917 -41.74334 -40.92479 -39.27121 -37.85938 -37.35441 -35.12426 -32.17850 -31.49754 -30.92129 -29.50819 -29.42168 -28.86471 -27.93181 -27.79599 -25.24932 -24.44527 -23.59456 -22.39433 -21.71649 -19.93567 -19.25747 -18.67529 -18.26498 -17.80129 -17.59918 -17.41817 -17.37485 -17.28443 -16.87912 -16.68410 -16.60199 -15.72108 -15.44642 -15.09440 -14.88651 -14.51407 -14.40049 -14.15621 -14.02365 -13.71567 -13.60606 -13.31020 -13.27251 -13.19871 -13.14146 -13.08627 -13.00402 -12.94988 -12.82772 -12.74360 -12.51176 -12.38023 -12.26326 -12.02032 -11.84869 -11.67384 -11.31147 -11.18833 -10.81379 -9.77069 -8.79588 -8.36446 -6.53951 -0.30828 0.33478 1.03716 1.33140 1.46148 1.47515 1.52351 1.66842 2.27652 2.33320 2.37382 2.74014 2.87137 3.09407 3.14305 3.27712 3.70437 3.79932 3.96316 4.03075 4.10026 4.15208 4.21947 4.27750 4.28721 4.30712 4.33340 4.36476 4.36896 4.41706 4.47178 4.51895 4.64502 4.67133 4.68801 4.73774 4.75578 4.80881 4.83291 4.95215 5.00303 5.14260 5.25403 5.28600 5.34628 5.56803 5.62471 5.77191 6.17114 6.47875 6.64455 6.83381 7.29296 8.60747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.513 3.487 4 O -0.545 6.545 5 C -0.163 4.163 6 C -0.044 4.044 7 C -0.186 4.186 8 C 0.164 3.836 9 O -0.285 6.285 10 C 0.180 3.820 11 H 0.081 0.919 12 C -0.565 4.565 13 H 0.070 0.930 14 C 0.074 3.926 15 N -0.862 5.862 16 Si 0.911 3.089 17 H -0.276 1.276 18 H -0.305 1.305 19 H -0.278 1.278 20 C 0.017 3.983 21 N -0.260 5.260 22 C -0.038 4.038 23 C -0.042 4.042 24 C -0.054 4.054 25 C 0.062 3.938 26 O -0.314 6.314 27 C 0.020 3.980 28 C -0.117 4.117 29 H 0.064 0.936 30 H 0.134 0.866 31 H 0.058 0.942 32 H 0.154 0.846 33 H 0.163 0.837 34 H 0.266 0.734 35 H 0.127 0.873 36 H 0.143 0.857 37 H 0.098 0.902 38 H 0.136 0.864 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.139 0.861 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.141 0.859 45 H 0.135 0.865 46 H 0.066 0.934 47 H 0.047 0.953 48 H 0.119 0.881 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.482 -1.738 -19.207 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.361 3.639 4 O -0.438 6.438 5 C -0.165 4.165 6 C -0.062 4.062 7 C -0.205 4.205 8 C 0.115 3.885 9 O -0.197 6.197 10 C 0.126 3.874 11 H 0.099 0.901 12 C -0.602 4.602 13 H 0.088 0.912 14 C -0.134 4.134 15 N -0.497 5.497 16 Si 0.741 3.259 17 H -0.201 1.201 18 H -0.233 1.233 19 H -0.203 1.203 20 C -0.103 4.103 21 N 0.083 4.917 22 C -0.179 4.179 23 C -0.183 4.183 24 C -0.195 4.195 25 C 0.017 3.983 26 O -0.229 6.229 27 C -0.075 4.075 28 C -0.137 4.137 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.077 0.923 32 H 0.172 0.828 33 H 0.180 0.820 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.161 0.839 37 H 0.117 0.883 38 H 0.154 0.846 39 H 0.123 0.877 40 H 0.147 0.853 41 H 0.157 0.843 42 H 0.126 0.874 43 H 0.118 0.882 44 H 0.159 0.841 45 H 0.153 0.847 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.137 0.863 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.723 -1.100 -19.116 19.984 hybrid contribution -0.729 -0.021 2.152 2.272 sum 4.994 -1.121 -16.964 17.719 Atomic orbital electron populations 1.23566 0.74441 1.05847 1.02514 1.86537 1.25057 1.31729 1.83919 1.21355 0.89520 0.81382 0.71683 1.90808 1.67632 1.37063 1.48254 1.18670 0.88436 0.94822 1.14573 1.21353 0.93251 0.97928 0.93680 1.21318 0.94791 0.97153 1.07240 1.18701 0.84879 0.90937 0.93964 1.86400 1.12393 1.36366 1.84531 1.20617 0.88378 0.82141 0.96243 0.90114 1.21495 1.40837 1.02256 0.95635 0.91211 1.25113 0.93871 0.94575 0.99831 1.69733 1.35865 1.10738 1.33377 0.86283 0.78583 0.78356 0.82708 1.20117 1.23255 1.20252 1.24150 1.01172 1.06061 0.78944 1.46029 1.15855 1.15046 1.14819 1.24203 1.01935 0.83923 1.07886 1.24201 0.81467 1.08972 1.03641 1.24297 0.99961 0.95901 0.99345 1.18165 0.89536 0.85311 1.05309 1.86168 1.35369 1.11922 1.89404 1.23262 0.96409 0.86274 1.01562 1.21058 0.92551 0.98217 1.01828 0.91705 0.84814 0.92298 0.82813 0.81959 0.92436 0.85549 0.83892 0.88280 0.84629 0.87748 0.85319 0.84304 0.87429 0.88195 0.84070 0.84689 0.91582 0.93469 0.86290 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.04 10.57 113.37 1.20 1.24 16 2 O -0.36 -2.42 9.80 -56.63 -0.56 -2.98 16 3 C 0.51 5.55 7.89 70.26 0.55 6.11 16 4 O -0.55 -8.70 16.13 19.80 0.32 -8.38 16 5 C -0.16 -1.38 5.87 -20.10 -0.12 -1.50 16 6 C -0.04 -0.19 9.60 22.52 0.22 0.02 16 7 C -0.19 -0.69 8.67 22.30 0.19 -0.50 16 8 C 0.16 1.00 6.07 22.70 0.14 1.13 16 9 O -0.28 -1.26 5.73 -77.13 -0.44 -1.70 16 10 C 0.18 -0.06 1.37 29.85 0.04 -0.02 16 11 H 0.08 -0.55 4.11 -2.39 -0.01 -0.56 16 12 C -0.56 -6.71 7.91 25.60 0.20 -6.51 16 13 H 0.07 0.94 7.81 -2.91 -0.02 0.92 16 14 C 0.07 1.34 5.25 84.65 0.44 1.78 16 15 N -0.86 -16.18 11.01 21.45 0.24 -15.94 16 16 Si 0.91 18.13 29.54 68.60 2.03 20.16 16 17 H -0.28 -5.47 7.11 99.48 0.71 -4.76 16 18 H -0.31 -7.42 7.11 99.48 0.71 -6.71 16 19 H -0.28 -5.90 7.11 99.48 0.71 -5.20 16 20 C 0.02 -0.17 3.58 86.30 0.31 0.14 16 21 N -0.26 5.66 0.05 ******* -0.07 5.60 16 22 C -0.04 0.66 7.15 127.69 0.91 1.58 16 23 C -0.04 1.18 8.00 127.69 1.02 2.20 16 24 C -0.05 1.41 7.55 127.69 0.96 2.38 16 25 C 0.06 0.48 6.69 22.52 0.15 0.63 16 26 O -0.31 -2.22 10.28 -79.58 -0.82 -3.03 16 27 C 0.02 0.02 9.81 113.37 1.11 1.13 16 28 C -0.12 -0.99 8.58 22.62 0.19 -0.79 16 29 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.13 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.15 0.12 7.60 -2.91 -0.02 0.10 16 33 H 0.16 0.13 5.65 -2.91 -0.02 0.11 16 34 H 0.27 5.64 8.31 -92.71 -0.77 4.87 16 35 H 0.13 -0.27 6.28 -2.39 -0.01 -0.28 16 36 H 0.14 -1.90 8.10 -2.39 -0.02 -1.92 16 37 H 0.10 -1.20 7.96 -2.39 -0.02 -1.22 16 38 H 0.14 -3.38 8.02 -2.38 -0.02 -3.40 16 39 H 0.10 -1.16 5.09 -2.39 -0.01 -1.17 16 40 H 0.13 -3.87 8.12 -2.39 -0.02 -3.89 16 41 H 0.14 -4.55 8.08 -2.39 -0.02 -4.57 16 42 H 0.11 -2.69 8.14 -2.38 -0.02 -2.71 16 43 H 0.10 -2.16 5.89 -2.39 -0.01 -2.17 16 44 H 0.14 -4.43 8.14 -2.39 -0.02 -4.45 16 45 H 0.13 -3.93 8.14 -2.38 -0.02 -3.95 16 46 H 0.07 -0.11 7.65 -2.39 -0.02 -0.13 16 47 H 0.05 0.13 7.67 -2.39 -0.02 0.11 16 48 H 0.12 -0.37 8.14 -2.38 -0.02 -0.39 16 49 H 0.14 1.14 5.87 -2.91 -0.02 1.12 16 Total: 0.00 -47.22 387.62 9.19 -38.03 By element: Atomic # 1 Polarization: -41.74 SS G_CDS: 0.95 Total: -40.79 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 7.53 Total: 9.03 kcal Atomic # 7 Polarization: -10.51 SS G_CDS: 0.17 Total: -10.35 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -1.50 Total: -16.09 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: 2.03 Total: 20.16 kcal Total: -47.22 9.19 -38.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228213655.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.472 kcal (2) G-P(sol) polarization free energy of solvation -47.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds