Wall clock time and date at job start Tue Mar 31 2020 21:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34711 * 117.00036 * 2 1 4 4 O 1.21469 * 120.00056 * 359.97438 * 3 2 1 5 5 C 1.47759 * 120.00058 * 179.97438 * 3 2 1 6 6 C 1.39582 * 120.09367 * 359.97438 * 5 3 2 7 7 C 1.38485 * 119.89553 * 179.97438 * 6 5 3 8 8 O 1.35912 * 119.94909 * 179.97438 * 7 6 5 9 9 C 1.42895 * 116.99725 * 359.97438 * 8 7 6 10 10 C 1.38754 * 120.09962 * 359.97438 * 7 6 5 11 11 C 1.38719 * 120.19849 * 0.02562 * 10 7 6 12 12 O 1.35909 * 119.95314 * 179.97438 * 11 10 7 13 13 C 1.42900 * 117.00249 * 181.18387 * 12 11 10 14 14 H 1.09004 * 109.47002 * 36.66715 * 13 12 11 15 15 C 1.50695 * 109.47175 * 276.66858 * 13 12 11 16 16 H 1.07999 * 119.99822 * 124.36696 * 15 13 12 17 17 C 1.37873 * 119.99865 * 304.36804 * 15 13 12 18 18 N 1.31510 * 120.00151 * 7.18750 * 17 15 13 19 19 Si 1.86802 * 119.99939 * 187.18931 * 17 15 13 20 20 H 1.48499 * 109.47322 * 269.99824 * 19 17 15 21 21 H 1.48500 * 109.47189 * 29.99910 * 19 17 15 22 22 H 1.48496 * 109.47347 * 149.99896 * 19 17 15 23 23 C 1.53000 * 109.46917 * 156.66749 * 13 12 11 24 24 N 1.46904 * 109.47302 * 293.21064 * 23 13 12 25 25 C 1.46897 * 109.46803 * 62.48881 * 24 23 13 26 26 C 1.46900 * 109.47323 * 182.48529 * 24 23 13 27 27 C 1.46896 * 109.47353 * 302.48868 * 24 23 13 28 28 C 1.38518 * 120.09956 * 0.25703 * 11 10 7 29 29 H 1.09001 * 109.46997 * 60.00082 * 1 2 3 30 30 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47521 * 300.00381 * 1 2 3 32 32 H 1.08000 * 120.05284 * 0.02562 * 6 5 3 33 33 H 1.08998 * 109.47646 * 60.00200 * 9 8 7 34 34 H 1.09002 * 109.47094 * 180.02562 * 9 8 7 35 35 H 1.09010 * 109.47505 * 299.99666 * 9 8 7 36 36 H 1.07999 * 119.90481 * 180.02562 * 10 7 6 37 37 H 0.96999 * 120.00230 * 355.19643 * 18 17 15 38 38 H 1.08998 * 109.47331 * 53.21676 * 23 13 12 39 39 H 1.09009 * 109.46824 * 173.21457 * 23 13 12 40 40 H 1.09003 * 109.47362 * 48.10956 * 25 24 23 41 41 H 1.08999 * 109.47342 * 168.11458 * 25 24 23 42 42 H 1.09003 * 109.47188 * 288.11119 * 25 24 23 43 43 H 1.09004 * 109.46923 * 59.99966 * 26 24 23 44 44 H 1.08994 * 109.47563 * 180.02562 * 26 24 23 45 45 H 1.09002 * 109.46858 * 300.00612 * 26 24 23 46 46 H 1.08998 * 109.47047 * 59.99504 * 27 24 23 47 47 H 1.09003 * 109.47418 * 179.97438 * 27 24 23 48 48 H 1.09005 * 109.47182 * 299.99601 * 27 24 23 49 49 H 1.07997 * 120.05424 * 179.74299 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5391 1.2776 0.0006 6 6 4.3013 0.1082 0.0017 7 6 5.6840 0.1855 0.0016 8 8 6.4271 -0.9525 0.0032 9 6 5.7158 -2.1918 0.0054 10 6 6.3118 1.4229 0.0000 11 6 5.5583 2.5876 -0.0010 12 8 6.1784 3.7970 -0.0021 13 6 5.3417 4.9551 0.0231 14 1 4.4721 4.7615 0.6513 15 6 4.8880 5.2777 -1.3772 16 1 3.8339 5.3572 -1.5984 17 6 5.8186 5.4711 -2.3760 18 7 7.0915 5.2366 -2.1431 19 14 5.2713 6.0664 -4.0599 20 1 4.9576 4.8975 -4.9204 21 1 4.0606 6.9142 -3.9159 22 1 6.3606 6.8609 -4.6822 23 6 6.1271 6.1394 0.5903 24 7 6.4293 5.8933 2.0067 25 6 7.2815 4.7027 2.1257 26 6 7.1313 7.0558 2.5668 27 6 5.1776 5.6752 2.7438 28 6 4.1748 2.5199 0.0049 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.8134 -0.8553 0.0017 33 1 5.0890 -2.2526 -0.8843 34 1 6.4262 -3.0185 0.0070 35 1 5.0895 -2.2498 0.8958 36 1 7.3903 1.4795 -0.0004 37 1 7.3848 4.9949 -1.2507 38 1 7.0577 6.2574 0.0353 39 1 5.5315 7.0477 0.4984 40 1 8.1063 4.7738 1.4167 41 1 7.6779 4.6394 3.1391 42 1 6.6926 3.8112 1.9097 43 1 6.4990 7.9393 2.4783 44 1 7.3560 6.8731 3.6175 45 1 8.0601 7.2176 2.0197 46 1 4.6567 4.8126 2.3282 47 1 5.4019 5.4922 3.7947 48 1 4.5453 6.5587 2.6555 49 1 3.5889 3.4272 0.0082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229256665.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:42 Heat of formation + Delta-G solvation = -17.645077 kcal Electronic energy + Delta-G solvation = -31633.926072 eV Core-core repulsion = 27453.447221 eV Total energy + Delta-G solvation = -4180.478851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.61709 -41.64283 -40.75314 -39.83470 -37.61223 -37.05315 -34.94542 -32.42349 -31.49757 -30.67327 -30.48112 -30.15871 -28.72482 -28.27701 -27.62153 -25.17874 -25.10526 -23.60341 -22.14061 -21.89206 -19.94687 -19.59813 -18.76995 -18.52210 -18.30799 -18.16622 -17.42030 -17.25717 -17.17019 -17.01057 -16.72964 -16.64071 -15.86684 -15.32488 -15.13433 -15.03362 -14.88338 -14.49167 -14.39474 -14.32447 -14.27088 -14.21532 -14.11089 -13.89611 -13.75264 -13.45563 -13.35880 -13.19380 -13.02597 -12.76445 -12.47193 -12.30947 -12.00985 -11.72123 -11.69314 -11.66628 -11.34605 -11.28604 -10.46318 -10.03533 -9.41211 -8.93442 -8.01584 -6.01590 -0.21657 0.09197 0.55642 1.67502 1.71940 1.92845 2.09432 2.13774 2.18304 2.32074 2.39375 2.49203 2.71431 2.87460 3.00928 3.04580 3.13418 3.25575 3.35186 3.48182 3.48847 3.59961 3.61224 3.65695 3.67826 3.85864 3.92976 3.98599 4.08029 4.12975 4.20628 4.23878 4.28139 4.29995 4.30578 4.33420 4.40702 4.59374 4.63088 4.66137 4.89328 5.12758 5.31086 5.36043 5.43321 5.60404 5.88592 6.38882 6.54774 6.76136 6.83366 7.12892 7.78282 9.31469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.508 3.492 4 O -0.498 6.498 5 C -0.053 4.053 6 C -0.198 4.198 7 C 0.153 3.847 8 O -0.312 6.312 9 C 0.025 3.975 10 C -0.163 4.163 11 C 0.183 3.817 12 O -0.322 6.322 13 C 0.171 3.829 14 H 0.059 0.941 15 C -0.635 4.635 16 H 0.076 0.924 17 C 0.052 3.948 18 N -0.858 5.858 19 Si 1.060 2.940 20 H -0.278 1.278 21 H -0.280 1.280 22 H -0.276 1.276 23 C -0.003 4.003 24 N -0.274 5.274 25 C -0.042 4.042 26 C -0.043 4.043 27 C -0.047 4.047 28 C -0.168 4.168 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.142 0.858 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.141 0.859 37 H 0.277 0.723 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.128 0.872 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.114 0.886 48 H 0.118 0.882 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 1.519 16.818 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.353 3.647 4 O -0.386 6.386 5 C -0.054 4.054 6 C -0.217 4.217 7 C 0.107 3.893 8 O -0.225 6.225 9 C -0.070 4.070 10 C -0.183 4.183 11 C 0.137 3.863 12 O -0.236 6.236 13 C 0.117 3.883 14 H 0.077 0.923 15 C -0.671 4.671 16 H 0.094 0.906 17 C -0.161 4.161 18 N -0.492 5.492 19 Si 0.885 3.115 20 H -0.204 1.204 21 H -0.205 1.205 22 H -0.201 1.201 23 C -0.122 4.122 24 N 0.068 4.932 25 C -0.184 4.184 26 C -0.184 4.184 27 C -0.189 4.189 28 C -0.187 4.187 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.159 0.841 37 H 0.091 0.909 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.139 0.861 41 H 0.124 0.876 42 H 0.146 0.854 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.132 0.868 48 H 0.137 0.863 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.006 2.185 15.321 15.606 hybrid contribution -1.224 -0.466 1.236 1.801 sum 0.782 1.719 16.557 16.665 Atomic orbital electron populations 1.23330 0.75575 1.04010 1.02856 1.86535 1.23849 1.32548 1.84242 1.21214 0.89100 0.81537 0.72888 1.90850 1.66687 1.35980 1.45096 1.18547 0.88605 0.93864 1.04374 1.21339 0.92580 0.99115 1.08675 1.18396 0.89112 0.86437 0.95340 1.86090 1.35164 1.12799 1.88478 1.23140 0.98508 0.83566 1.01764 1.19713 1.00963 0.87636 1.09954 1.18050 0.89725 0.85433 0.93139 1.86158 1.38517 1.12170 1.86802 1.20656 0.87825 0.80144 0.99682 0.92320 1.22129 0.96742 1.56265 0.91935 0.90565 1.26018 0.93345 0.91944 1.04821 1.70958 1.16189 1.37592 1.24413 0.83579 0.76121 0.77713 0.74067 1.20359 1.20530 1.20056 1.24992 1.07710 1.04485 0.74964 1.46428 1.14737 1.14984 1.17060 1.24314 0.98690 0.88625 1.06726 1.24058 1.01791 0.89145 1.03422 1.24106 0.86325 1.08641 0.99800 1.21290 0.93845 0.97772 1.05746 0.91546 0.87763 0.91721 0.84067 0.92217 0.87881 0.92369 0.84113 0.90889 0.84771 0.84799 0.86079 0.87649 0.85372 0.86608 0.86894 0.86442 0.86319 0.86778 0.86347 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.01 10.56 101.05 1.07 1.08 16 2 O -0.36 -1.08 9.81 -40.52 -0.40 -1.48 16 3 C 0.51 2.45 7.90 34.62 0.27 2.72 16 4 O -0.50 -3.49 16.13 -19.24 -0.31 -3.80 16 5 C -0.05 -0.21 5.87 -105.02 -0.62 -0.83 16 6 C -0.20 -0.55 8.60 -38.99 -0.34 -0.89 16 7 C 0.15 0.46 6.68 -39.30 -0.26 0.20 16 8 O -0.31 -0.79 10.49 -19.46 -0.20 -0.99 16 9 C 0.03 -0.02 9.81 101.05 0.99 0.97 16 10 C -0.16 -0.48 9.91 -39.21 -0.39 -0.87 16 11 C 0.18 0.55 6.05 -39.30 -0.24 0.31 16 12 O -0.32 -0.54 4.82 -19.45 -0.09 -0.63 16 13 C 0.17 0.13 1.37 -27.89 -0.04 0.09 16 14 H 0.06 -0.06 3.92 -51.93 -0.20 -0.26 16 15 C -0.63 -4.61 8.08 -34.44 -0.28 -4.89 16 16 H 0.08 0.70 7.82 -52.49 -0.41 0.29 16 17 C 0.05 0.50 5.22 -17.82 -0.09 0.41 16 18 N -0.86 -8.88 13.01 55.43 0.72 -8.16 16 19 Si 1.06 9.79 29.91 -169.99 -5.08 4.71 16 20 H -0.28 -2.91 7.11 56.52 0.40 -2.51 16 21 H -0.28 -2.42 7.11 56.52 0.40 -2.02 16 22 H -0.28 -2.74 7.11 56.52 0.40 -2.34 16 23 C 0.00 0.01 3.47 -3.82 -0.01 0.00 16 24 N -0.27 2.85 0.05 -395.62 -0.02 2.83 16 25 C -0.04 0.40 7.03 60.06 0.42 0.83 16 26 C -0.04 0.56 7.99 60.06 0.48 1.04 16 27 C -0.05 0.54 7.58 60.06 0.46 0.99 16 28 C -0.17 -0.65 8.28 -38.99 -0.32 -0.97 16 29 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.10 -0.25 8.14 -51.93 -0.42 -0.67 16 31 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 32 H 0.14 0.18 5.83 -52.49 -0.31 -0.13 16 33 H 0.06 -0.06 7.65 -51.93 -0.40 -0.46 16 34 H 0.10 -0.26 8.14 -51.93 -0.42 -0.69 16 35 H 0.06 -0.12 7.66 -51.92 -0.40 -0.51 16 36 H 0.14 0.30 8.06 -52.49 -0.42 -0.13 16 37 H 0.28 2.11 4.67 -40.82 -0.19 1.92 16 38 H 0.13 -0.31 6.04 -51.93 -0.31 -0.62 16 39 H 0.13 -0.75 8.12 -51.92 -0.42 -1.17 16 40 H 0.12 -0.99 7.91 -51.93 -0.41 -1.40 16 41 H 0.10 -1.31 7.95 -51.93 -0.41 -1.73 16 42 H 0.13 -0.92 5.37 -51.93 -0.28 -1.20 16 43 H 0.12 -1.58 8.14 -51.93 -0.42 -2.00 16 44 H 0.11 -1.68 8.05 -51.93 -0.42 -2.10 16 45 H 0.12 -1.48 8.14 -51.93 -0.42 -1.90 16 46 H 0.12 -1.08 5.87 -51.93 -0.30 -1.39 16 47 H 0.11 -1.57 8.14 -51.93 -0.42 -1.99 16 48 H 0.12 -1.45 8.14 -51.93 -0.42 -1.87 16 49 H 0.15 0.67 5.27 -52.49 -0.28 0.39 16 LS Contribution 385.27 15.07 5.81 5.81 Total: 0.00 -21.00 385.27 -5.82 -26.82 By element: Atomic # 1 Polarization: -17.94 SS G_CDS: -7.34 Total: -25.28 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 1.10 Total: 0.18 kcal Atomic # 7 Polarization: -6.03 SS G_CDS: 0.70 Total: -5.33 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -1.01 Total: -6.91 kcal Atomic # 14 Polarization: 9.79 SS G_CDS: -5.08 Total: 4.71 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -21.00 -5.82 -26.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229256665.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.178 kcal (2) G-P(sol) polarization free energy of solvation -21.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds