Wall clock time and date at job start Tue Mar 31 2020 21:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34711 * 117.00036 * 2 1 4 4 O 1.21469 * 120.00056 * 359.97438 * 3 2 1 5 5 C 1.47759 * 120.00058 * 179.97438 * 3 2 1 6 6 C 1.39582 * 120.09367 * 359.97438 * 5 3 2 7 7 C 1.38485 * 119.89553 * 179.97438 * 6 5 3 8 8 O 1.35912 * 119.94909 * 179.97438 * 7 6 5 9 9 C 1.42895 * 116.99725 * 359.97438 * 8 7 6 10 10 C 1.38754 * 120.09962 * 359.97438 * 7 6 5 11 11 C 1.38719 * 120.19849 * 0.02562 * 10 7 6 12 12 O 1.35909 * 119.95314 * 179.97438 * 11 10 7 13 13 C 1.42900 * 117.00249 * 181.18387 * 12 11 10 14 14 H 1.09004 * 109.47002 * 36.66715 * 13 12 11 15 15 C 1.50695 * 109.47175 * 276.66858 * 13 12 11 16 16 H 1.07999 * 119.99822 * 124.36696 * 15 13 12 17 17 C 1.37873 * 119.99865 * 304.36804 * 15 13 12 18 18 N 1.31510 * 120.00151 * 7.18750 * 17 15 13 19 19 Si 1.86802 * 119.99939 * 187.18931 * 17 15 13 20 20 H 1.48499 * 109.47322 * 269.99824 * 19 17 15 21 21 H 1.48500 * 109.47189 * 29.99910 * 19 17 15 22 22 H 1.48496 * 109.47347 * 149.99896 * 19 17 15 23 23 C 1.53000 * 109.46917 * 156.66749 * 13 12 11 24 24 N 1.46904 * 109.47302 * 293.21064 * 23 13 12 25 25 C 1.46897 * 109.46803 * 62.48881 * 24 23 13 26 26 C 1.46900 * 109.47323 * 182.48529 * 24 23 13 27 27 C 1.46896 * 109.47353 * 302.48868 * 24 23 13 28 28 C 1.38518 * 120.09956 * 0.25703 * 11 10 7 29 29 H 1.09001 * 109.46997 * 60.00082 * 1 2 3 30 30 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47521 * 300.00381 * 1 2 3 32 32 H 1.08000 * 120.05284 * 0.02562 * 6 5 3 33 33 H 1.08998 * 109.47646 * 60.00200 * 9 8 7 34 34 H 1.09002 * 109.47094 * 180.02562 * 9 8 7 35 35 H 1.09010 * 109.47505 * 299.99666 * 9 8 7 36 36 H 1.07999 * 119.90481 * 180.02562 * 10 7 6 37 37 H 0.96999 * 120.00230 * 355.19643 * 18 17 15 38 38 H 1.08998 * 109.47331 * 53.21676 * 23 13 12 39 39 H 1.09009 * 109.46824 * 173.21457 * 23 13 12 40 40 H 1.09003 * 109.47362 * 48.10956 * 25 24 23 41 41 H 1.08999 * 109.47342 * 168.11458 * 25 24 23 42 42 H 1.09003 * 109.47188 * 288.11119 * 25 24 23 43 43 H 1.09004 * 109.46923 * 59.99966 * 26 24 23 44 44 H 1.08994 * 109.47563 * 180.02562 * 26 24 23 45 45 H 1.09002 * 109.46858 * 300.00612 * 26 24 23 46 46 H 1.08998 * 109.47047 * 59.99504 * 27 24 23 47 47 H 1.09003 * 109.47418 * 179.97438 * 27 24 23 48 48 H 1.09005 * 109.47182 * 299.99601 * 27 24 23 49 49 H 1.07997 * 120.05424 * 179.74299 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5391 1.2776 0.0006 6 6 4.3013 0.1082 0.0017 7 6 5.6840 0.1855 0.0016 8 8 6.4271 -0.9525 0.0032 9 6 5.7158 -2.1918 0.0054 10 6 6.3118 1.4229 0.0000 11 6 5.5583 2.5876 -0.0010 12 8 6.1784 3.7970 -0.0021 13 6 5.3417 4.9551 0.0231 14 1 4.4721 4.7615 0.6513 15 6 4.8880 5.2777 -1.3772 16 1 3.8339 5.3572 -1.5984 17 6 5.8186 5.4711 -2.3760 18 7 7.0915 5.2366 -2.1431 19 14 5.2713 6.0664 -4.0599 20 1 4.9576 4.8975 -4.9204 21 1 4.0606 6.9142 -3.9159 22 1 6.3606 6.8609 -4.6822 23 6 6.1271 6.1394 0.5903 24 7 6.4293 5.8933 2.0067 25 6 7.2815 4.7027 2.1257 26 6 7.1313 7.0558 2.5668 27 6 5.1776 5.6752 2.7438 28 6 4.1748 2.5199 0.0049 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 3.8134 -0.8553 0.0017 33 1 5.0890 -2.2526 -0.8843 34 1 6.4262 -3.0185 0.0070 35 1 5.0895 -2.2498 0.8958 36 1 7.3903 1.4795 -0.0004 37 1 7.3848 4.9949 -1.2507 38 1 7.0577 6.2574 0.0353 39 1 5.5315 7.0477 0.4984 40 1 8.1063 4.7738 1.4167 41 1 7.6779 4.6394 3.1391 42 1 6.6926 3.8112 1.9097 43 1 6.4990 7.9393 2.4783 44 1 7.3560 6.8731 3.6175 45 1 8.0601 7.2176 2.0197 46 1 4.6567 4.8126 2.3282 47 1 5.4019 5.4922 3.7947 48 1 4.5453 6.5587 2.6555 49 1 3.5889 3.4272 0.0082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229256665.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:41 Heat of formation + Delta-G solvation = -24.351100 kcal Electronic energy + Delta-G solvation = -31634.216867 eV Core-core repulsion = 27453.447221 eV Total energy + Delta-G solvation = -4180.769646 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.03040 -41.87492 -40.96988 -39.92778 -37.84555 -37.33584 -35.37274 -32.66866 -31.47925 -30.60550 -29.65160 -29.54527 -28.82181 -28.24137 -27.70774 -25.41028 -24.96216 -23.46026 -22.33560 -22.04594 -20.22249 -19.69697 -18.64644 -18.10928 -18.04102 -17.77010 -17.52984 -17.43884 -17.34754 -17.19075 -16.77802 -16.72937 -16.00389 -15.67754 -15.35064 -14.70802 -14.56262 -14.51255 -14.37663 -14.22823 -13.90840 -13.70164 -13.45392 -13.35957 -13.32450 -13.26843 -13.19492 -13.16521 -13.04832 -12.95153 -12.77675 -12.59300 -12.43233 -12.06884 -11.92810 -11.89435 -11.85662 -11.59600 -10.98576 -10.71453 -9.65543 -9.18332 -8.65839 -6.62752 -0.51115 0.31656 0.84154 1.35072 1.47974 1.51011 1.58144 1.68866 1.88225 2.39682 2.55325 2.61622 2.71860 2.92744 2.99001 3.17260 3.43511 3.69104 3.87327 3.91951 3.95789 4.03163 4.10017 4.13146 4.16589 4.21437 4.23070 4.25723 4.26261 4.32976 4.37743 4.39614 4.47765 4.49977 4.58114 4.64896 4.66521 4.74173 4.76520 4.79444 4.83721 4.94261 5.08090 5.12535 5.15882 5.36432 5.52497 6.00090 6.26268 6.40271 6.51407 6.56380 7.17022 8.71827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.509 3.491 4 O -0.528 6.528 5 C -0.066 4.066 6 C -0.193 4.193 7 C 0.152 3.848 8 O -0.325 6.325 9 C 0.015 3.985 10 C -0.168 4.168 11 C 0.181 3.819 12 O -0.313 6.313 13 C 0.168 3.832 14 H 0.075 0.925 15 C -0.638 4.638 16 H 0.047 0.953 17 C 0.030 3.970 18 N -0.896 5.896 19 Si 1.072 2.928 20 H -0.300 1.300 21 H -0.273 1.273 22 H -0.285 1.285 23 C 0.018 3.982 24 N -0.258 5.258 25 C -0.045 4.045 26 C -0.045 4.045 27 C -0.053 4.053 28 C -0.177 4.177 29 H 0.059 0.941 30 H 0.136 0.864 31 H 0.067 0.933 32 H 0.158 0.842 33 H 0.061 0.939 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.289 0.711 38 H 0.115 0.885 39 H 0.148 0.852 40 H 0.105 0.895 41 H 0.146 0.854 42 H 0.103 0.897 43 H 0.127 0.873 44 H 0.145 0.855 45 H 0.113 0.887 46 H 0.092 0.908 47 H 0.149 0.851 48 H 0.131 0.869 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.683 1.222 19.728 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.355 3.645 4 O -0.419 6.419 5 C -0.067 4.067 6 C -0.212 4.212 7 C 0.106 3.894 8 O -0.238 6.238 9 C -0.079 4.079 10 C -0.187 4.187 11 C 0.134 3.866 12 O -0.227 6.227 13 C 0.114 3.886 14 H 0.093 0.907 15 C -0.676 4.676 16 H 0.066 0.934 17 C -0.180 4.180 18 N -0.532 5.532 19 Si 0.900 3.100 20 H -0.228 1.228 21 H -0.198 1.198 22 H -0.211 1.211 23 C -0.104 4.104 24 N 0.084 4.916 25 C -0.187 4.187 26 C -0.185 4.185 27 C -0.194 4.194 28 C -0.196 4.196 29 H 0.078 0.922 30 H 0.154 0.846 31 H 0.086 0.914 32 H 0.175 0.825 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.165 0.835 37 H 0.103 0.897 38 H 0.133 0.867 39 H 0.166 0.834 40 H 0.124 0.876 41 H 0.164 0.836 42 H 0.122 0.878 43 H 0.145 0.855 44 H 0.163 0.837 45 H 0.131 0.869 46 H 0.111 0.889 47 H 0.168 0.832 48 H 0.150 0.850 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.416 1.882 18.240 18.496 hybrid contribution -1.433 -0.492 0.399 1.567 sum 0.983 1.391 18.639 18.716 Atomic orbital electron populations 1.23626 0.74037 1.06078 1.02733 1.86528 1.25379 1.31456 1.83689 1.21380 0.89380 0.81627 0.72099 1.90828 1.67334 1.36979 1.46774 1.18632 0.88495 0.94373 1.05189 1.21455 0.92519 0.99295 1.07910 1.18471 0.89204 0.86796 0.94968 1.86082 1.35948 1.13478 1.88298 1.23422 0.99297 0.82603 1.02552 1.19853 1.01323 0.87748 1.09791 1.18128 0.89436 0.86100 0.92959 1.86182 1.37933 1.11945 1.86635 1.20689 0.89999 0.80861 0.97061 0.90735 1.22245 0.94989 1.55022 0.95354 0.93424 1.26011 0.93897 0.92904 1.05170 1.70907 1.16359 1.40322 1.25643 0.83416 0.75864 0.76645 0.74056 1.22772 1.19809 1.21111 1.24177 1.06100 1.01684 0.78408 1.46012 1.15648 1.16050 1.13903 1.24326 0.97786 0.87786 1.08769 1.24287 1.01413 0.87975 1.04795 1.24297 0.85698 1.08185 1.01225 1.21232 0.94167 0.97505 1.06661 0.92213 0.84584 0.91383 0.82495 0.91991 0.86052 0.90982 0.83501 0.89706 0.86701 0.83424 0.87581 0.83583 0.87805 0.85482 0.83710 0.86855 0.88894 0.83241 0.85048 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.56 113.37 1.20 1.21 16 2 O -0.35 -2.26 9.81 -56.20 -0.55 -2.82 16 3 C 0.51 5.60 7.90 70.34 0.56 6.15 16 4 O -0.53 -8.46 16.13 19.94 0.32 -8.13 16 5 C -0.07 -0.62 5.87 -20.12 -0.12 -0.74 16 6 C -0.19 -1.16 8.60 22.65 0.19 -0.97 16 7 C 0.15 0.98 6.68 22.45 0.15 1.13 16 8 O -0.32 -1.57 10.49 -92.56 -0.97 -2.54 16 9 C 0.02 -0.04 9.81 113.37 1.11 1.07 16 10 C -0.17 -1.16 9.91 22.51 0.22 -0.94 16 11 C 0.18 1.37 6.05 22.45 0.14 1.51 16 12 O -0.31 -1.53 4.82 -92.52 -0.45 -1.97 16 13 C 0.17 0.49 1.37 29.85 0.04 0.53 16 14 H 0.08 -0.03 3.92 -2.38 -0.01 -0.04 16 15 C -0.64 -10.89 8.08 25.60 0.21 -10.68 16 16 H 0.05 1.04 7.82 -2.91 -0.02 1.02 16 17 C 0.03 0.65 5.22 84.65 0.44 1.09 16 18 N -0.90 -20.54 13.01 21.45 0.28 -20.26 16 19 Si 1.07 22.75 29.91 68.60 2.05 24.81 16 20 H -0.30 -7.33 7.11 99.48 0.71 -6.62 16 21 H -0.27 -5.29 7.11 99.48 0.71 -4.58 16 22 H -0.29 -6.40 7.11 99.48 0.71 -5.69 16 23 C 0.02 -0.16 3.47 86.30 0.30 0.14 16 24 N -0.26 5.71 0.05 ******* -0.07 5.64 16 25 C -0.05 0.91 7.03 127.69 0.90 1.80 16 26 C -0.04 1.28 7.99 127.69 1.02 2.30 16 27 C -0.05 1.30 7.58 127.69 0.97 2.26 16 28 C -0.18 -1.72 8.28 22.65 0.19 -1.54 16 29 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.14 -0.83 8.14 -2.39 -0.02 -0.85 16 31 H 0.07 0.01 8.14 -2.38 -0.02 -0.01 16 32 H 0.16 0.33 5.83 -2.91 -0.02 0.31 16 33 H 0.06 -0.18 7.65 -2.39 -0.02 -0.19 16 34 H 0.12 -0.78 8.14 -2.39 -0.02 -0.79 16 35 H 0.07 -0.38 7.66 -2.38 -0.02 -0.40 16 36 H 0.15 0.75 8.06 -2.91 -0.02 0.73 16 37 H 0.29 4.95 4.67 -92.71 -0.43 4.51 16 38 H 0.11 -0.43 6.04 -2.39 -0.01 -0.44 16 39 H 0.15 -1.70 8.12 -2.38 -0.02 -1.72 16 40 H 0.11 -1.71 7.91 -2.39 -0.02 -1.73 16 41 H 0.15 -4.07 7.95 -2.39 -0.02 -4.09 16 42 H 0.10 -1.47 5.37 -2.39 -0.01 -1.49 16 43 H 0.13 -3.82 8.14 -2.38 -0.02 -3.84 16 44 H 0.14 -4.92 8.05 -2.39 -0.02 -4.94 16 45 H 0.11 -3.03 8.14 -2.39 -0.02 -3.05 16 46 H 0.09 -1.69 5.87 -2.39 -0.01 -1.71 16 47 H 0.15 -4.61 8.14 -2.39 -0.02 -4.63 16 48 H 0.13 -3.48 8.14 -2.38 -0.02 -3.50 16 49 H 0.14 1.61 5.27 -2.91 -0.02 1.59 16 Total: 0.00 -52.37 385.27 9.42 -42.95 By element: Atomic # 1 Polarization: -43.32 SS G_CDS: 1.29 Total: -42.02 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 7.51 Total: 4.35 kcal Atomic # 7 Polarization: -14.83 SS G_CDS: 0.21 Total: -14.62 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -1.65 Total: -15.46 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: 2.05 Total: 24.81 kcal Total: -52.37 9.42 -42.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229256665.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.603 kcal (2) G-P(sol) polarization free energy of solvation -52.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds