Wall clock time and date at job start Tue Mar 31 2020 21:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99756 * 2 1 4 4 C 1.52998 * 109.47470 * 270.00188 * 3 2 1 5 5 H 1.09003 * 112.74079 * 74.66795 * 4 3 2 6 6 C 1.53504 * 113.47485 * 205.43851 * 4 3 2 7 7 C 1.53630 * 83.53563 * 140.77355 * 6 4 3 8 8 N 1.47478 * 87.95166 * 334.02190 * 7 6 4 9 9 C 1.46905 * 111.00060 * 138.64866 * 8 7 6 10 10 C 1.50698 * 109.46821 * 94.03426 * 9 8 7 11 11 C 1.29442 * 117.96603 * 94.99784 * 10 9 8 12 12 C 1.50072 * 124.07715 * 180.44317 * 11 10 9 13 13 C 1.53024 * 110.14704 * 342.87099 * 12 11 10 14 14 C 1.53398 * 108.43794 * 49.43436 * 13 12 11 15 15 C 1.50070 * 117.95900 * 274.73361 * 10 9 8 16 16 C 1.34771 * 120.00128 * 180.02562 * 2 1 3 17 17 O 1.21288 * 119.99896 * 179.97438 * 16 2 1 18 18 C 1.50703 * 120.00048 * 359.97438 * 16 2 1 19 19 S 1.81000 * 109.46826 * 180.02562 * 18 16 2 20 20 C 1.76205 * 99.99509 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00431 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99884 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99752 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99976 * 180.27840 * 22 20 19 25 25 H 1.48497 * 109.47173 * 179.72423 * 24 22 20 26 26 H 1.48506 * 109.46866 * 299.71959 * 24 22 20 27 27 H 1.48501 * 109.47438 * 59.72080 * 24 22 20 28 28 H 1.08996 * 109.46996 * 269.99683 * 1 2 3 29 29 H 1.09003 * 109.47400 * 29.99677 * 1 2 3 30 30 H 1.09003 * 109.46993 * 149.99446 * 1 2 3 31 31 H 1.09000 * 109.47071 * 30.00398 * 3 2 1 32 32 H 1.09007 * 109.46858 * 150.00118 * 3 2 1 33 33 H 1.09004 * 114.17379 * 254.43761 * 6 4 3 34 34 H 1.08995 * 114.17574 * 27.14597 * 6 4 3 35 35 H 1.09002 * 113.52002 * 219.24319 * 7 6 4 36 36 H 1.09005 * 113.47899 * 88.79819 * 7 6 4 37 37 H 1.09001 * 109.46622 * 214.02987 * 9 8 7 38 38 H 1.09000 * 109.47120 * 334.03329 * 9 8 7 39 39 H 1.08000 * 117.95860 * 0.42217 * 11 10 9 40 40 H 1.09001 * 109.35464 * 103.07564 * 12 11 10 41 41 H 1.09003 * 109.35854 * 222.66692 * 12 11 10 42 42 H 1.09002 * 109.64308 * 169.11985 * 13 12 11 43 43 H 1.09004 * 109.64355 * 289.75292 * 13 12 11 44 44 H 1.08999 * 109.64197 * 52.25202 * 14 13 12 45 45 H 1.09004 * 109.64004 * 172.87868 * 14 13 12 46 46 H 1.09001 * 109.35619 * 283.09809 * 15 10 9 47 47 H 1.09000 * 109.35943 * 42.68371 * 15 10 9 48 48 H 1.09000 * 109.46926 * 60.00592 * 18 16 2 49 49 H 1.09001 * 109.47144 * 300.00330 * 18 16 2 50 50 H 0.97005 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4425 5 1 1.5577 2.0999 -1.9283 6 6 3.6775 2.6229 -1.5951 7 6 3.9040 1.8127 -2.8806 8 7 3.1672 0.7029 -2.2479 9 6 2.2616 0.0574 -3.2078 10 6 2.9547 -1.1241 -3.8359 11 6 2.7551 -2.2923 -3.3153 12 6 3.3821 -3.5576 -3.8234 13 6 3.9166 -3.3483 -5.2418 14 6 4.7611 -2.0677 -5.2581 15 6 3.8288 -0.8739 -5.0299 16 6 2.1389 -1.1671 -0.0005 17 8 3.3518 -1.1671 -0.0010 18 6 1.3854 -2.4723 -0.0005 19 16 2.5617 -3.8479 -0.0005 20 6 1.4416 -5.2081 -0.0013 21 1 0.3763 -5.0305 -0.0020 22 6 1.9284 -6.5080 -0.0010 23 7 3.2268 -6.7245 -0.0006 24 14 0.7410 -7.9500 -0.0097 25 1 1.5071 -9.2221 -0.0146 26 1 -0.1159 -7.8929 1.2020 27 1 -0.1123 -7.8814 -1.2231 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1384 0.5139 33 1 3.4345 3.6719 -1.7649 34 1 4.4426 2.4741 -0.8332 35 1 4.9525 1.5845 -3.0718 36 1 3.3978 2.2294 -3.7514 37 1 1.3643 -0.2811 -2.6896 38 1 1.9855 0.7714 -3.9837 39 1 2.0966 -2.3605 -2.4620 40 1 4.2035 -3.8429 -3.1661 41 1 2.6361 -4.3523 -3.8320 42 1 4.5350 -4.1986 -5.5296 43 1 3.0827 -3.2460 -5.9363 44 1 5.5076 -2.1110 -4.4650 45 1 5.2545 -1.9665 -6.2247 46 1 3.2038 -0.7259 -5.9105 47 1 4.4265 0.0215 -4.8589 48 1 0.7585 -2.5299 -0.8903 49 1 0.7590 -2.5302 0.8897 50 1 3.5670 -7.6330 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230814994.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:56 Heat of formation + Delta-G solvation = 11.781888 kcal Electronic energy + Delta-G solvation = -29125.528677 eV Core-core repulsion = 25473.141669 eV Total energy + Delta-G solvation = -3652.387008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54452 -38.74385 -37.92345 -35.00270 -32.67833 -32.38241 -30.31328 -30.27167 -28.69790 -27.84974 -26.14121 -25.41238 -24.15722 -23.21381 -22.61758 -20.98152 -19.70737 -19.04066 -17.57302 -17.17317 -16.52630 -16.03594 -15.89228 -15.76603 -15.13382 -14.76723 -14.60066 -14.19379 -13.91575 -13.72599 -13.38565 -13.27397 -13.09463 -12.74561 -12.68432 -12.48366 -12.39966 -12.27746 -12.01742 -11.93838 -11.70597 -11.51897 -11.43681 -11.16266 -11.02361 -10.99608 -10.98417 -10.73301 -10.53760 -10.44582 -10.01083 -9.76920 -9.70265 -9.07742 -9.01524 -8.74359 -8.26605 -8.15260 -8.13417 -6.41044 -6.17209 -3.85576 2.77588 3.06404 3.24721 3.28908 3.31151 3.34566 3.69164 4.17687 4.24989 4.43568 4.74868 4.94064 4.98902 5.06676 5.13577 5.17705 5.20585 5.24015 5.25179 5.29906 5.36685 5.45876 5.50865 5.55931 5.64353 5.68263 5.70011 5.73749 5.77289 5.82064 5.89470 5.93949 5.96783 5.99842 6.04682 6.11786 6.15031 6.21060 6.23078 6.42596 6.46983 6.60597 6.74075 6.83781 6.85925 7.16793 7.29656 7.61784 7.63186 7.76058 8.39021 8.84887 9.28324 10.89644 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010995 B = 0.004636 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.113253 B = 6037.952998 C = 7852.405235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.626 5.626 3 C 0.138 3.862 4 C 0.006 3.994 5 H 0.070 0.930 6 C -0.136 4.136 7 C -0.003 4.003 8 N -0.430 5.430 9 C 0.064 3.936 10 C -0.151 4.151 11 C -0.093 4.093 12 C -0.088 4.088 13 C -0.119 4.119 14 C -0.117 4.117 15 C -0.069 4.069 16 C 0.533 3.467 17 O -0.487 6.487 18 C -0.153 4.153 19 S -0.047 6.047 20 C -0.536 4.536 21 H 0.068 0.932 22 C 0.077 3.923 23 N -0.866 5.866 24 Si 0.912 3.088 25 H -0.283 1.283 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.036 0.964 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 18.047 -7.493 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.363 5.363 3 C 0.014 3.986 4 C -0.105 4.105 5 H 0.088 0.912 6 C -0.175 4.175 7 C -0.132 4.132 8 N -0.151 5.151 9 C -0.064 4.064 10 C -0.152 4.152 11 C -0.112 4.112 12 C -0.124 4.124 13 C -0.156 4.156 14 C -0.154 4.154 15 C -0.106 4.106 16 C 0.319 3.681 17 O -0.358 6.358 18 C -0.304 4.304 19 S 0.180 5.820 20 C -0.684 4.684 21 H 0.087 0.913 22 C -0.132 4.132 23 N -0.502 5.502 24 Si 0.739 3.261 25 H -0.209 1.209 26 H -0.201 1.201 27 H -0.200 1.200 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.099 0.901 49 H 0.101 0.899 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.274 17.315 -7.178 18.788 hybrid contribution -3.016 -0.337 -0.428 3.065 sum -4.291 16.978 -7.606 19.092 Atomic orbital electron populations 1.21710 0.80521 1.02558 1.01459 1.47754 1.06087 1.05825 1.76588 1.21313 0.98028 0.84768 0.94500 1.23826 0.96353 0.93306 0.96979 0.91223 1.23171 0.98007 0.97527 0.98764 1.23811 1.01257 0.92299 0.95849 1.69182 1.16248 1.15793 1.13923 1.21672 0.95265 0.95633 0.93835 1.20290 1.02244 0.93964 0.98685 1.22056 0.98227 0.93518 0.97435 1.20399 1.00988 0.95993 0.95070 1.21620 0.99086 0.97256 0.97660 1.21592 0.97980 0.94936 1.00920 1.20249 0.96545 0.98113 0.95671 1.20078 0.88057 0.84084 0.75857 1.90717 1.13192 1.86276 1.45640 1.23633 1.04603 0.98181 1.03976 1.85398 1.07455 0.92659 1.96457 1.22841 0.94330 0.92504 1.58757 0.91332 1.24919 0.95494 0.98153 0.94663 1.70007 1.11608 1.21589 1.46970 0.86327 0.80392 0.80644 0.78759 1.20868 1.20050 1.20006 0.92961 0.91931 0.91120 0.91050 0.89334 0.91057 0.88640 0.89925 0.92067 0.91329 0.94574 0.87564 0.89736 0.90894 0.92184 0.92546 0.91554 0.92654 0.92392 0.92182 0.90116 0.89926 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.24 59.85 0.61 1.49 16 2 N -0.63 -8.92 2.64 -181.56 -0.48 -9.40 16 3 C 0.14 1.68 5.57 -4.04 -0.02 1.66 16 4 C 0.01 0.07 3.33 -71.45 -0.24 -0.17 16 5 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16 6 C -0.14 -1.33 8.01 -26.14 -0.21 -1.54 16 7 C 0.00 -0.03 6.92 -7.49 -0.05 -0.09 16 8 N -0.43 -6.04 4.94 -237.77 -1.17 -7.21 16 9 C 0.06 0.90 4.82 -4.97 -0.02 0.88 16 10 C -0.15 -2.38 5.42 -100.94 -0.55 -2.93 16 11 C -0.09 -1.69 9.37 -35.90 -0.34 -2.03 16 12 C -0.09 -1.59 6.12 -28.17 -0.17 -1.76 16 13 C -0.12 -1.74 6.01 -26.51 -0.16 -1.90 16 14 C -0.12 -1.60 6.02 -26.43 -0.16 -1.76 16 15 C -0.07 -0.93 5.80 -28.09 -0.16 -1.09 16 16 C 0.53 10.09 6.73 -10.99 -0.07 10.02 16 17 O -0.49 -11.02 14.86 5.55 0.08 -10.94 16 18 C -0.15 -3.14 3.83 36.01 0.14 -3.00 16 19 S -0.05 -1.23 20.28 -107.50 -2.18 -3.41 16 20 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 21 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 22 C 0.08 2.16 5.49 -17.43 -0.10 2.07 16 23 N -0.87 -25.71 13.22 55.49 0.73 -24.97 16 24 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 30 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 31 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.09 1.28 7.18 -51.93 -0.37 0.91 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.10 1.00 7.95 -51.93 -0.41 0.59 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.61 7.42 -51.93 -0.39 0.22 16 37 H 0.07 1.03 7.55 -51.93 -0.39 0.63 16 38 H 0.04 0.45 7.27 -51.93 -0.38 0.07 16 39 H 0.11 2.15 5.05 -52.49 -0.27 1.88 16 40 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 44 H 0.07 1.01 8.12 -51.93 -0.42 0.58 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.77 7.34 -51.93 -0.38 0.39 16 48 H 0.08 1.57 6.58 -51.92 -0.34 1.23 16 49 H 0.08 1.62 8.11 -51.91 -0.42 1.20 16 50 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 402.43 15.07 6.06 6.06 Total: -1.00 -32.76 402.43 -11.89 -44.65 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -8.70 Total: 3.77 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -1.21 Total: -14.84 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.92 Total: -41.59 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.23 SS G_CDS: -2.18 Total: -3.41 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.76 -11.89 -44.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814994.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.429 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds