Wall clock time and date at job start Tue Mar 31 2020 21:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 119.99756 * 2 1 4 4 C 1.52998 * 109.47470 * 270.00188 * 3 2 1 5 5 H 1.09003 * 112.74079 * 74.66795 * 4 3 2 6 6 C 1.53504 * 113.47485 * 205.43851 * 4 3 2 7 7 C 1.53630 * 83.53563 * 140.77355 * 6 4 3 8 8 N 1.47478 * 87.95166 * 334.02190 * 7 6 4 9 9 C 1.46905 * 111.00060 * 138.64866 * 8 7 6 10 10 C 1.50698 * 109.46821 * 94.03426 * 9 8 7 11 11 C 1.29442 * 117.96603 * 94.99784 * 10 9 8 12 12 C 1.50072 * 124.07715 * 180.44317 * 11 10 9 13 13 C 1.53024 * 110.14704 * 342.87099 * 12 11 10 14 14 C 1.53398 * 108.43794 * 49.43436 * 13 12 11 15 15 C 1.50070 * 117.95900 * 274.73361 * 10 9 8 16 16 C 1.34771 * 120.00128 * 180.02562 * 2 1 3 17 17 O 1.21288 * 119.99896 * 179.97438 * 16 2 1 18 18 C 1.50703 * 120.00048 * 359.97438 * 16 2 1 19 19 S 1.81000 * 109.46826 * 180.02562 * 18 16 2 20 20 C 1.76205 * 99.99509 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00431 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99884 * 180.02562 * 20 19 18 23 23 N 1.31634 * 119.99752 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99976 * 180.27840 * 22 20 19 25 25 H 1.48497 * 109.47173 * 179.72423 * 24 22 20 26 26 H 1.48506 * 109.46866 * 299.71959 * 24 22 20 27 27 H 1.48501 * 109.47438 * 59.72080 * 24 22 20 28 28 H 1.08996 * 109.46996 * 269.99683 * 1 2 3 29 29 H 1.09003 * 109.47400 * 29.99677 * 1 2 3 30 30 H 1.09003 * 109.46993 * 149.99446 * 1 2 3 31 31 H 1.09000 * 109.47071 * 30.00398 * 3 2 1 32 32 H 1.09007 * 109.46858 * 150.00118 * 3 2 1 33 33 H 1.09004 * 114.17379 * 254.43761 * 6 4 3 34 34 H 1.08995 * 114.17574 * 27.14597 * 6 4 3 35 35 H 1.09002 * 113.52002 * 219.24319 * 7 6 4 36 36 H 1.09005 * 113.47899 * 88.79819 * 7 6 4 37 37 H 1.09001 * 109.46622 * 214.02987 * 9 8 7 38 38 H 1.09000 * 109.47120 * 334.03329 * 9 8 7 39 39 H 1.08000 * 117.95860 * 0.42217 * 11 10 9 40 40 H 1.09001 * 109.35464 * 103.07564 * 12 11 10 41 41 H 1.09003 * 109.35854 * 222.66692 * 12 11 10 42 42 H 1.09002 * 109.64308 * 169.11985 * 13 12 11 43 43 H 1.09004 * 109.64355 * 289.75292 * 13 12 11 44 44 H 1.08999 * 109.64197 * 52.25202 * 14 13 12 45 45 H 1.09004 * 109.64004 * 172.87868 * 14 13 12 46 46 H 1.09001 * 109.35619 * 283.09809 * 15 10 9 47 47 H 1.09000 * 109.35943 * 42.68371 * 15 10 9 48 48 H 1.09000 * 109.46926 * 60.00592 * 18 16 2 49 49 H 1.09001 * 109.47144 * 300.00330 * 18 16 2 50 50 H 0.97005 * 119.99723 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4425 5 1 1.5577 2.0999 -1.9283 6 6 3.6775 2.6229 -1.5951 7 6 3.9040 1.8127 -2.8806 8 7 3.1672 0.7029 -2.2479 9 6 2.2616 0.0574 -3.2078 10 6 2.9547 -1.1241 -3.8359 11 6 2.7551 -2.2923 -3.3153 12 6 3.3821 -3.5576 -3.8234 13 6 3.9166 -3.3483 -5.2418 14 6 4.7611 -2.0677 -5.2581 15 6 3.8288 -0.8739 -5.0299 16 6 2.1389 -1.1671 -0.0005 17 8 3.3518 -1.1671 -0.0010 18 6 1.3854 -2.4723 -0.0005 19 16 2.5617 -3.8479 -0.0005 20 6 1.4416 -5.2081 -0.0013 21 1 0.3763 -5.0305 -0.0020 22 6 1.9284 -6.5080 -0.0010 23 7 3.2268 -6.7245 -0.0006 24 14 0.7410 -7.9500 -0.0097 25 1 1.5071 -9.2221 -0.0146 26 1 -0.1159 -7.8929 1.2020 27 1 -0.1123 -7.8814 -1.2231 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1384 0.5139 33 1 3.4345 3.6719 -1.7649 34 1 4.4426 2.4741 -0.8332 35 1 4.9525 1.5845 -3.0718 36 1 3.3978 2.2294 -3.7514 37 1 1.3643 -0.2811 -2.6896 38 1 1.9855 0.7714 -3.9837 39 1 2.0966 -2.3605 -2.4620 40 1 4.2035 -3.8429 -3.1661 41 1 2.6361 -4.3523 -3.8320 42 1 4.5350 -4.1986 -5.5296 43 1 3.0827 -3.2460 -5.9363 44 1 5.5076 -2.1110 -4.4650 45 1 5.2545 -1.9665 -6.2247 46 1 3.2038 -0.7259 -5.9105 47 1 4.4265 0.0215 -4.8589 48 1 0.7585 -2.5299 -0.8903 49 1 0.7590 -2.5302 0.8897 50 1 3.5670 -7.6330 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230814994.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:55 Heat of formation + Delta-G solvation = -8.108406 kcal Electronic energy + Delta-G solvation = -29126.391185 eV Core-core repulsion = 25473.141669 eV Total energy + Delta-G solvation = -3653.249516 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.57019 -40.08509 -39.13382 -36.29688 -34.55190 -33.82271 -31.63734 -31.55639 -29.83556 -29.01048 -27.64176 -27.14144 -25.21997 -24.28914 -23.81739 -22.17671 -20.73259 -20.36665 -19.44605 -18.42620 -17.88615 -17.19846 -17.07916 -16.89877 -16.85687 -16.34299 -15.83263 -15.79499 -15.26603 -14.96311 -14.57413 -14.55292 -14.39483 -14.18905 -14.04675 -13.64716 -13.56320 -13.37554 -13.19382 -13.18496 -13.10377 -12.94797 -12.88612 -12.68488 -12.50923 -12.44305 -12.17614 -11.94610 -11.70608 -11.67016 -11.46229 -11.22923 -11.10936 -10.93329 -10.61119 -10.17443 -9.75118 -9.53431 -9.28939 -8.55906 -8.31337 -6.05442 1.28164 1.40631 1.45365 1.47153 1.57711 1.85358 2.23438 2.31643 3.02091 3.22645 3.36242 3.58832 3.80236 3.83652 3.86548 3.98061 4.06403 4.17853 4.21809 4.29180 4.34181 4.39007 4.40229 4.43261 4.49268 4.52813 4.55287 4.62833 4.70838 4.73988 4.76188 4.78216 4.88963 4.91870 4.99534 5.01061 5.02510 5.05818 5.18391 5.21148 5.30885 5.39932 5.42663 5.48647 5.55728 5.79239 5.89926 6.21215 6.26398 6.33286 6.48142 7.09970 7.42817 8.76816 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010995 B = 0.004636 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.113253 B = 6037.952998 C = 7852.405235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.614 5.614 3 C 0.133 3.867 4 C 0.011 3.989 5 H 0.095 0.905 6 C -0.121 4.121 7 C -0.003 4.003 8 N -0.471 5.471 9 C 0.068 3.932 10 C -0.129 4.129 11 C -0.133 4.133 12 C -0.081 4.081 13 C -0.111 4.111 14 C -0.114 4.114 15 C -0.068 4.068 16 C 0.536 3.464 17 O -0.534 6.534 18 C -0.127 4.127 19 S -0.119 6.119 20 C -0.548 4.548 21 H 0.073 0.927 22 C 0.021 3.979 23 N -0.908 5.908 24 Si 0.987 3.013 25 H -0.278 1.278 26 H -0.264 1.264 27 H -0.264 1.264 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.041 0.959 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.041 0.959 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 20.983 -9.000 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.349 5.349 3 C 0.011 3.989 4 C -0.100 4.100 5 H 0.113 0.887 6 C -0.160 4.160 7 C -0.131 4.131 8 N -0.193 5.193 9 C -0.060 4.060 10 C -0.130 4.130 11 C -0.152 4.152 12 C -0.118 4.118 13 C -0.149 4.149 14 C -0.152 4.152 15 C -0.105 4.105 16 C 0.322 3.678 17 O -0.409 6.409 18 C -0.279 4.279 19 S 0.108 5.892 20 C -0.696 4.696 21 H 0.091 0.909 22 C -0.184 4.184 23 N -0.544 5.544 24 Si 0.809 3.191 25 H -0.203 1.203 26 H -0.188 1.188 27 H -0.189 1.189 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.078 0.922 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.091 0.909 48 H 0.107 0.893 49 H 0.110 0.890 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.580 20.302 -8.680 22.368 hybrid contribution -2.338 -1.087 0.065 2.579 sum -5.918 19.214 -8.615 21.873 Atomic orbital electron populations 1.21986 0.77981 1.03984 1.02895 1.47705 1.07661 1.05020 1.74474 1.21557 0.97279 0.84293 0.95804 1.23894 0.97711 0.92693 0.95688 0.88748 1.23081 0.96619 0.98912 0.97347 1.23873 1.00443 0.91583 0.97237 1.69165 1.17409 1.17802 1.14944 1.21627 0.94619 0.95358 0.94435 1.20740 1.00328 0.93668 0.98233 1.21841 1.00525 0.94518 0.98343 1.20233 0.98923 0.95797 0.96847 1.21579 0.99803 0.98329 0.95159 1.21582 0.97468 0.94416 1.01690 1.20339 0.96517 0.98255 0.95400 1.19734 0.87339 0.84804 0.75877 1.90699 1.14977 1.86918 1.48303 1.23425 1.02959 0.96893 1.04605 1.85533 1.11165 0.95809 1.96691 1.23147 0.94533 0.93248 1.58634 0.90859 1.25954 0.97310 1.01238 0.93920 1.70173 1.13867 1.22257 1.48122 0.85172 0.77973 0.76547 0.79370 1.20314 1.18830 1.18887 0.91451 0.88270 0.92016 0.87009 0.92218 0.87748 0.90114 0.91267 0.89837 0.92639 0.92043 0.90262 0.94080 0.93305 0.91674 0.90869 0.93961 0.89560 0.89767 0.90911 0.89330 0.89050 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 10.24 127.77 1.31 2.70 16 2 N -0.61 -16.70 2.64 -846.73 -2.23 -18.93 16 3 C 0.13 2.97 5.57 86.38 0.48 3.45 16 4 C 0.01 0.20 3.33 42.18 0.14 0.35 16 5 H 0.09 1.42 7.91 -2.39 -0.02 1.40 16 6 C -0.12 -1.99 8.01 30.98 0.25 -1.74 16 7 C 0.00 -0.05 6.92 83.61 0.58 0.53 16 8 N -0.47 -12.55 4.94 -906.18 -4.48 -17.03 16 9 C 0.07 1.79 4.82 85.56 0.41 2.20 16 10 C -0.13 -4.02 5.42 -15.10 -0.08 -4.10 16 11 C -0.13 -5.12 9.37 27.04 0.25 -4.86 16 12 C -0.08 -3.20 6.12 29.66 0.18 -3.02 16 13 C -0.11 -3.31 6.01 30.74 0.18 -3.13 16 14 C -0.11 -3.03 6.02 30.79 0.19 -2.85 16 15 C -0.07 -1.70 5.80 29.71 0.17 -1.53 16 16 C 0.54 20.84 6.73 87.66 0.59 21.43 16 17 O -0.53 -25.43 14.86 -3.06 -0.05 -25.48 16 18 C -0.13 -5.42 3.83 71.24 0.27 -5.15 16 19 S -0.12 -6.72 20.28 -56.49 -1.15 -7.87 16 20 C -0.55 -31.89 9.50 67.96 0.65 -31.24 16 21 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 22 C 0.02 1.21 5.49 84.86 0.47 1.68 16 23 N -0.91 -56.37 13.22 21.65 0.29 -56.09 16 24 Si 0.99 44.56 29.55 68.60 2.03 46.59 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 27 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 1.20 8.07 -2.39 -0.02 1.18 16 30 H 0.06 1.30 6.44 -2.39 -0.02 1.29 16 31 H 0.11 1.60 8.07 -2.39 -0.02 1.58 16 32 H 0.06 1.71 7.18 -2.38 -0.02 1.69 16 33 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.08 1.58 7.95 -2.39 -0.02 1.56 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.29 7.42 -2.38 -0.02 1.27 16 37 H 0.06 1.59 7.55 -2.39 -0.02 1.57 16 38 H 0.06 1.30 7.27 -2.39 -0.02 1.28 16 39 H 0.08 3.45 5.05 -2.91 -0.01 3.43 16 40 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 44 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16 45 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 47 H 0.07 1.67 7.34 -2.39 -0.02 1.66 16 48 H 0.09 3.59 6.58 -2.39 -0.02 3.57 16 49 H 0.09 3.66 8.11 -2.39 -0.02 3.64 16 50 H 0.27 15.64 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -78.13 402.43 1.36 -76.77 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.90 Total: 27.31 kcal Atomic # 6 Polarization: -31.33 SS G_CDS: 6.04 Total: -25.29 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -6.42 Total: -92.04 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.05 Total: -25.48 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: -6.72 SS G_CDS: -1.15 Total: -7.87 kcal Total: -78.13 1.36 -76.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814994.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.665 kcal (2) G-P(sol) polarization free energy of solvation -78.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds