Wall clock time and date at job start Tue Mar 31 2020 21:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35990 * 116.99894 * 2 1 4 4 C 1.38624 * 120.06598 * 0.25584 * 3 2 1 5 5 C 1.38218 * 120.04198 * 180.29776 * 4 3 2 6 6 C 1.50697 * 119.91761 * 179.72599 * 5 4 3 7 7 N 1.46907 * 109.46815 * 269.97519 * 6 5 4 8 8 C 1.46894 * 111.00091 * 66.05232 * 7 6 5 9 9 C 1.46904 * 110.99737 * 190.00538 * 7 6 5 10 10 C 1.38259 * 120.15573 * 359.70119 * 5 4 3 11 11 C 1.38407 * 120.12505 * 0.02562 * 10 5 4 12 12 F 1.35101 * 120.02514 * 179.97438 * 11 10 5 13 13 C 1.38759 * 119.96030 * 359.97438 * 11 10 5 14 14 O 1.36053 * 120.07955 * 179.97438 * 13 11 10 15 15 C 1.42900 * 116.99632 * 90.00749 * 14 13 11 16 16 H 1.09002 * 110.91914 * 32.44534 * 15 14 13 17 17 C 1.55164 * 111.00222 * 156.34880 * 15 14 13 18 18 C 1.54335 * 103.01707 * 153.37714 * 17 15 14 19 19 N 1.47025 * 107.26967 * 338.14240 * 18 17 15 20 20 C 1.36928 * 125.64878 * 178.85064 * 19 18 17 21 21 H 1.08006 * 120.00053 * 174.45185 * 20 19 18 22 22 C 1.38813 * 120.00205 * 354.45497 * 20 19 18 23 23 N 1.31624 * 120.00029 * 7.04593 * 22 20 19 24 24 Si 1.86800 * 120.00200 * 187.04997 * 22 20 19 25 25 H 1.48501 * 109.47290 * 94.98673 * 24 22 20 26 26 H 1.48503 * 109.47352 * 214.98626 * 24 22 20 27 27 H 1.48498 * 109.47058 * 334.98334 * 24 22 20 28 28 C 1.47425 * 108.69933 * 358.58232 * 19 18 17 29 29 H 1.09007 * 109.46948 * 299.99625 * 1 2 3 30 30 H 1.08995 * 109.47452 * 59.99645 * 1 2 3 31 31 H 1.08999 * 109.47376 * 179.97438 * 1 2 3 32 32 H 1.08011 * 119.97786 * 0.04385 * 4 3 2 33 33 H 1.08994 * 109.47810 * 29.97514 * 6 5 4 34 34 H 1.09001 * 109.47156 * 149.97913 * 6 5 4 35 35 H 1.08996 * 109.47189 * 59.99465 * 8 7 6 36 36 H 1.08998 * 109.47423 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.46977 * 300.00046 * 8 7 6 38 38 H 1.08994 * 109.47238 * 60.00205 * 9 7 6 39 39 H 1.08999 * 109.46718 * 180.02562 * 9 7 6 40 40 H 1.09002 * 109.46695 * 300.00091 * 9 7 6 41 41 H 1.08006 * 119.93689 * 180.02562 * 10 5 4 42 42 H 1.08991 * 110.71641 * 271.93307 * 17 15 14 43 43 H 1.08990 * 110.72015 * 35.03536 * 17 15 14 44 44 H 1.08999 * 109.99166 * 218.66062 * 18 17 15 45 45 H 1.09007 * 109.77513 * 97.49808 * 18 17 15 46 46 H 0.96996 * 119.99695 * 179.97438 * 23 22 20 47 47 H 1.09000 * 110.36458 * 143.19638 * 28 19 18 48 48 H 1.08999 * 110.37143 * 265.51990 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2927 2.3751 0.0054 5 6 1.9206 3.6064 -0.0009 6 6 1.0985 4.8694 -0.0013 7 7 0.8263 5.2760 -1.3865 8 6 -0.0360 4.2976 -2.0624 9 6 0.2354 6.6201 -1.4341 10 6 3.3011 3.6820 -0.0062 11 6 4.0602 2.5246 -0.0059 12 9 5.4091 2.6009 -0.0116 13 6 3.4350 1.2859 0.0004 14 8 4.1788 0.1467 0.0002 15 6 4.5390 -0.3931 1.2734 16 1 3.7629 -0.1965 2.0131 17 6 4.8363 -1.9124 1.1693 18 6 5.8149 -2.1559 2.3376 19 7 6.4298 -0.8621 2.6688 20 6 7.3412 -0.6439 3.6672 21 1 7.8027 0.3266 3.7744 22 6 7.6720 -1.6702 4.5414 23 7 7.2183 -2.8874 4.3293 24 14 8.7611 -1.3237 6.0190 25 1 7.9123 -1.0611 7.2089 26 1 9.6297 -2.4996 6.2804 27 1 9.6073 -0.1351 5.7424 28 6 5.9073 0.1601 1.7439 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2140 2.3194 0.0103 33 1 0.1564 4.6900 0.5165 34 1 1.6482 5.6609 0.5083 35 1 -0.9832 4.2182 -1.5289 36 1 -0.2214 4.6227 -3.0862 37 1 0.4570 3.3255 -2.0740 38 1 0.9258 7.3365 -0.9889 39 1 0.0436 6.8960 -2.4710 40 1 -0.7019 6.6248 -0.8777 41 1 3.7882 4.6460 -0.0106 42 1 3.9236 -2.4937 1.3002 43 1 5.3089 -2.1484 0.2161 44 1 6.5850 -2.8662 2.0368 45 1 5.2707 -2.5395 3.2007 46 1 7.4498 -3.6045 4.9400 47 1 5.7745 1.1092 2.2632 48 1 6.5794 0.2823 0.8945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234242810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:55 Heat of formation + Delta-G solvation = -49.388216 kcal Electronic energy + Delta-G solvation = -30237.904968 eV Core-core repulsion = 26016.652249 eV Total energy + Delta-G solvation = -4221.252719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.73704 -40.59371 -38.52148 -38.31113 -36.73785 -35.82140 -32.29674 -30.99161 -30.11958 -29.14855 -28.12650 -27.75521 -27.24460 -26.29234 -24.36344 -22.94059 -22.44545 -21.35957 -20.33434 -20.03362 -18.27718 -17.52795 -17.28400 -16.93566 -16.20145 -16.15498 -15.69250 -15.42734 -15.38046 -15.27061 -14.98544 -14.58892 -14.36019 -14.27148 -13.85534 -13.35169 -13.13696 -12.92890 -12.74380 -12.55294 -12.35260 -12.26818 -12.19683 -12.04060 -11.95262 -11.86155 -11.64525 -11.34290 -11.06191 -11.00211 -10.90299 -10.73346 -10.23669 -10.06486 -9.79762 -9.68804 -9.29721 -8.84766 -8.58986 -8.53616 -8.26912 -6.79320 -5.68594 -3.00991 0.86888 1.12412 2.96811 3.13939 3.43468 3.48437 3.50783 3.70231 3.92353 4.23546 4.39618 4.54458 4.72563 4.74575 4.82483 4.87777 4.93178 4.94790 5.03262 5.07718 5.12930 5.26242 5.28887 5.30416 5.43239 5.47578 5.50176 5.56108 5.59047 5.66587 5.72750 5.80403 5.85695 5.98325 6.19820 6.30636 6.47645 6.55327 6.56923 6.59356 6.61431 6.72002 6.83579 7.10598 7.58985 7.65934 7.80912 7.90110 8.29079 9.25223 9.85289 10.51758 11.43719 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.002796 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.713706 B =10010.856644 C =10882.779286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.296 6.296 3 C 0.137 3.863 4 C -0.205 4.205 5 C -0.026 4.026 6 C 0.095 3.905 7 N -0.541 5.541 8 C 0.018 3.982 9 C 0.024 3.976 10 C -0.159 4.159 11 C 0.124 3.876 12 F -0.119 7.119 13 C 0.043 3.957 14 O -0.308 6.308 15 C 0.077 3.923 16 H 0.068 0.932 17 C -0.133 4.133 18 C 0.178 3.822 19 N -0.603 5.603 20 C -0.226 4.226 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.121 3.879 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.133 0.867 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.025 0.975 41 H 0.141 0.859 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.051 0.949 46 H 0.252 0.748 47 H 0.038 0.962 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.742 14.572 -11.918 27.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.209 6.209 3 C 0.090 3.910 4 C -0.225 4.225 5 C -0.027 4.027 6 C -0.032 4.032 7 N -0.265 5.265 8 C -0.130 4.130 9 C -0.124 4.124 10 C -0.179 4.179 11 C 0.104 3.896 12 F -0.097 7.097 13 C -0.004 4.004 14 O -0.224 6.224 15 C 0.021 3.979 16 H 0.086 0.914 17 C -0.172 4.172 18 C 0.054 3.946 19 N -0.331 5.331 20 C -0.355 4.355 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C -0.006 4.006 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.151 0.849 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.158 0.842 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -18.997 14.164 -12.155 26.632 hybrid contribution -0.284 0.299 1.369 1.430 sum -19.282 14.463 -10.786 26.407 Atomic orbital electron populations 1.23119 0.78457 1.04288 1.01117 1.86241 1.21079 1.25561 1.87995 1.19038 0.90852 0.85023 0.96104 1.21003 0.99969 0.91166 1.10360 1.19167 0.92750 0.93760 0.96980 1.21053 0.98028 0.94654 0.89488 1.61960 1.46562 1.02713 1.15267 1.22506 0.94552 0.97051 0.98875 1.22404 0.97779 0.90010 1.02184 1.20786 0.93318 0.97429 1.06336 1.17711 0.77812 0.92875 1.01178 1.91562 1.27956 1.96907 1.93261 1.17919 0.87356 0.86681 1.08401 1.86174 1.69304 1.36660 1.30304 1.23815 0.96710 0.95151 0.82218 0.91373 1.22981 1.00456 0.92350 1.01391 1.21202 0.92858 0.88209 0.92360 1.44362 1.49372 1.03411 1.35962 1.19079 1.15356 0.97246 1.03777 0.90347 1.24831 1.00795 0.95564 0.99238 1.69972 1.49343 0.99670 1.37885 0.86097 0.79638 0.77106 0.82968 1.21643 1.21743 1.20581 1.21950 0.92200 0.92864 0.93589 0.92623 0.92705 0.87909 0.84909 0.93459 0.89243 0.95661 0.91284 0.90705 0.91097 0.91136 0.95602 0.84158 0.91546 0.91308 0.93605 0.93079 0.93733 0.94386 0.95136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.30 -4.04 10.28 -34.26 -0.35 -4.39 16 3 C 0.14 1.90 6.70 -39.13 -0.26 1.64 16 4 C -0.21 -2.21 6.95 -39.45 -0.27 -2.48 16 5 C -0.03 -0.27 4.88 -104.62 -0.51 -0.78 16 6 C 0.09 0.76 5.11 -4.97 -0.03 0.73 16 7 N -0.54 -4.36 5.01 -252.73 -1.27 -5.63 16 8 C 0.02 0.13 9.14 60.06 0.55 0.68 16 9 C 0.02 0.14 9.57 60.07 0.57 0.72 16 10 C -0.16 -1.95 9.67 -39.51 -0.38 -2.34 16 11 C 0.12 1.94 7.31 -39.33 -0.29 1.65 16 12 F -0.12 -2.07 16.50 2.25 0.04 -2.03 16 13 C 0.04 0.71 5.65 -39.08 -0.22 0.49 16 14 O -0.31 -5.99 9.52 -34.45 -0.33 -6.32 16 15 C 0.08 1.59 3.56 -24.58 -0.09 1.50 16 16 H 0.07 1.40 7.99 -51.93 -0.42 0.98 16 17 C -0.13 -2.79 6.68 -24.89 -0.17 -2.95 16 18 C 0.18 4.57 5.39 -3.06 -0.02 4.55 16 19 N -0.60 -16.44 3.39 -170.06 -0.58 -17.02 16 20 C -0.23 -6.59 10.26 -15.06 -0.15 -6.75 16 21 H 0.08 2.21 7.84 -52.48 -0.41 1.80 16 22 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 23 N -0.92 -27.70 10.36 55.49 0.57 -27.12 16 24 Si 0.91 22.62 29.56 -169.99 -5.02 17.60 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.12 2.82 6.36 -2.53 -0.02 2.80 16 29 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 30 H 0.05 0.35 7.67 -51.93 -0.40 -0.04 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.13 1.07 6.27 -52.48 -0.33 0.74 16 33 H 0.05 0.33 8.06 -51.93 -0.42 -0.09 16 34 H 0.09 0.64 8.01 -51.93 -0.42 0.22 16 35 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 37 H 0.07 0.62 6.17 -51.93 -0.32 0.30 16 38 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 39 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 40 H 0.03 0.14 8.14 -51.93 -0.42 -0.29 16 41 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.05 1.27 7.63 -51.93 -0.40 0.88 16 45 H 0.05 1.41 7.28 -51.92 -0.38 1.03 16 46 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 390.76 15.07 5.89 5.89 Total: -1.00 -33.49 390.76 -9.09 -42.58 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -7.66 Total: -3.90 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -0.38 Total: 0.34 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -1.27 Total: -49.77 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.68 Total: -10.71 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.49 -9.09 -42.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234242810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.807 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds