Wall clock time and date at job start Tue Mar 31 2020 21:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35990 * 116.99894 * 2 1 4 4 C 1.38624 * 120.06598 * 0.25584 * 3 2 1 5 5 C 1.38218 * 120.04198 * 180.29776 * 4 3 2 6 6 C 1.50697 * 119.91761 * 179.72599 * 5 4 3 7 7 N 1.46907 * 109.46815 * 269.97519 * 6 5 4 8 8 C 1.46894 * 111.00091 * 66.05232 * 7 6 5 9 9 C 1.46904 * 110.99737 * 190.00538 * 7 6 5 10 10 C 1.38259 * 120.15573 * 359.70119 * 5 4 3 11 11 C 1.38407 * 120.12505 * 0.02562 * 10 5 4 12 12 F 1.35101 * 120.02514 * 179.97438 * 11 10 5 13 13 C 1.38759 * 119.96030 * 359.97438 * 11 10 5 14 14 O 1.36053 * 120.07955 * 179.97438 * 13 11 10 15 15 C 1.42900 * 116.99632 * 90.00749 * 14 13 11 16 16 H 1.09002 * 110.91914 * 32.44534 * 15 14 13 17 17 C 1.55164 * 111.00222 * 156.34880 * 15 14 13 18 18 C 1.54335 * 103.01707 * 153.37714 * 17 15 14 19 19 N 1.47025 * 107.26967 * 338.14240 * 18 17 15 20 20 C 1.36928 * 125.64878 * 178.85064 * 19 18 17 21 21 H 1.08006 * 120.00053 * 174.45185 * 20 19 18 22 22 C 1.38813 * 120.00205 * 354.45497 * 20 19 18 23 23 N 1.31624 * 120.00029 * 7.04593 * 22 20 19 24 24 Si 1.86800 * 120.00200 * 187.04997 * 22 20 19 25 25 H 1.48501 * 109.47290 * 94.98673 * 24 22 20 26 26 H 1.48503 * 109.47352 * 214.98626 * 24 22 20 27 27 H 1.48498 * 109.47058 * 334.98334 * 24 22 20 28 28 C 1.47425 * 108.69933 * 358.58232 * 19 18 17 29 29 H 1.09007 * 109.46948 * 299.99625 * 1 2 3 30 30 H 1.08995 * 109.47452 * 59.99645 * 1 2 3 31 31 H 1.08999 * 109.47376 * 179.97438 * 1 2 3 32 32 H 1.08011 * 119.97786 * 0.04385 * 4 3 2 33 33 H 1.08994 * 109.47810 * 29.97514 * 6 5 4 34 34 H 1.09001 * 109.47156 * 149.97913 * 6 5 4 35 35 H 1.08996 * 109.47189 * 59.99465 * 8 7 6 36 36 H 1.08998 * 109.47423 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.46977 * 300.00046 * 8 7 6 38 38 H 1.08994 * 109.47238 * 60.00205 * 9 7 6 39 39 H 1.08999 * 109.46718 * 180.02562 * 9 7 6 40 40 H 1.09002 * 109.46695 * 300.00091 * 9 7 6 41 41 H 1.08006 * 119.93689 * 180.02562 * 10 5 4 42 42 H 1.08991 * 110.71641 * 271.93307 * 17 15 14 43 43 H 1.08990 * 110.72015 * 35.03536 * 17 15 14 44 44 H 1.08999 * 109.99166 * 218.66062 * 18 17 15 45 45 H 1.09007 * 109.77513 * 97.49808 * 18 17 15 46 46 H 0.96996 * 119.99695 * 179.97438 * 23 22 20 47 47 H 1.09000 * 110.36458 * 143.19638 * 28 19 18 48 48 H 1.08999 * 110.37143 * 265.51990 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2927 2.3751 0.0054 5 6 1.9206 3.6064 -0.0009 6 6 1.0985 4.8694 -0.0013 7 7 0.8263 5.2760 -1.3865 8 6 -0.0360 4.2976 -2.0624 9 6 0.2354 6.6201 -1.4341 10 6 3.3011 3.6820 -0.0062 11 6 4.0602 2.5246 -0.0059 12 9 5.4091 2.6009 -0.0116 13 6 3.4350 1.2859 0.0004 14 8 4.1788 0.1467 0.0002 15 6 4.5390 -0.3931 1.2734 16 1 3.7629 -0.1965 2.0131 17 6 4.8363 -1.9124 1.1693 18 6 5.8149 -2.1559 2.3376 19 7 6.4298 -0.8621 2.6688 20 6 7.3412 -0.6439 3.6672 21 1 7.8027 0.3266 3.7744 22 6 7.6720 -1.6702 4.5414 23 7 7.2183 -2.8874 4.3293 24 14 8.7611 -1.3237 6.0190 25 1 7.9123 -1.0611 7.2089 26 1 9.6297 -2.4996 6.2804 27 1 9.6073 -0.1351 5.7424 28 6 5.9073 0.1601 1.7439 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2140 2.3194 0.0103 33 1 0.1564 4.6900 0.5165 34 1 1.6482 5.6609 0.5083 35 1 -0.9832 4.2182 -1.5289 36 1 -0.2214 4.6227 -3.0862 37 1 0.4570 3.3255 -2.0740 38 1 0.9258 7.3365 -0.9889 39 1 0.0436 6.8960 -2.4710 40 1 -0.7019 6.6248 -0.8777 41 1 3.7882 4.6460 -0.0106 42 1 3.9236 -2.4937 1.3002 43 1 5.3089 -2.1484 0.2161 44 1 6.5850 -2.8662 2.0368 45 1 5.2707 -2.5395 3.2007 46 1 7.4498 -3.6045 4.9400 47 1 5.7745 1.1092 2.2632 48 1 6.5794 0.2823 0.8945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234242810.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:54 Heat of formation + Delta-G solvation = -70.862432 kcal Electronic energy + Delta-G solvation = -30238.836159 eV Core-core repulsion = 26016.652249 eV Total energy + Delta-G solvation = -4222.183911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.97735 -41.61665 -39.94217 -39.12496 -38.08769 -37.03587 -34.32967 -32.08134 -31.08272 -31.06708 -29.12869 -28.69279 -28.27372 -27.29953 -26.32732 -23.80790 -23.42516 -22.31564 -22.00860 -21.88082 -19.46717 -19.04557 -18.60163 -18.31761 -17.24190 -17.21086 -16.78630 -16.40138 -16.35807 -16.28847 -16.05995 -16.01081 -15.82549 -15.58605 -15.12181 -14.83270 -14.50817 -14.14770 -14.02873 -13.79629 -13.50276 -13.24446 -13.13205 -13.10311 -12.96522 -12.84611 -12.73577 -12.51539 -12.49961 -12.45820 -12.21719 -12.04235 -12.01830 -11.88155 -11.83835 -11.56830 -10.89867 -10.73041 -9.74644 -9.32239 -9.23528 -8.98491 -7.90391 -5.27153 -0.18055 0.13296 1.44554 1.47229 1.56619 2.04558 2.14585 2.46216 2.65194 3.18059 3.24699 3.28432 3.58479 3.62717 3.71578 3.85531 3.91023 4.02593 4.04560 4.14515 4.26447 4.27954 4.33123 4.39887 4.48203 4.53436 4.56665 4.60455 4.70051 4.73822 4.75733 4.80665 4.83586 4.87082 4.94401 4.97945 5.02063 5.07724 5.09702 5.31449 5.38525 5.54399 5.56206 5.66172 6.03061 6.08385 6.10424 6.15276 6.54576 7.03841 7.68123 8.34125 9.20866 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.002796 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.713706 B =10010.856644 C =10882.779286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.136 3.864 4 C -0.190 4.190 5 C -0.011 4.011 6 C 0.096 3.904 7 N -0.560 5.560 8 C 0.017 3.983 9 C 0.025 3.975 10 C -0.158 4.158 11 C 0.101 3.899 12 F -0.139 7.139 13 C -0.004 4.004 14 O -0.318 6.318 15 C 0.096 3.904 16 H 0.069 0.931 17 C -0.120 4.120 18 C 0.188 3.812 19 N -0.624 5.624 20 C -0.251 4.251 21 H 0.080 0.920 22 C -0.061 4.061 23 N -0.949 5.949 24 Si 0.984 3.016 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.269 1.269 28 C 0.124 3.876 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.167 0.833 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.157 0.843 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.014 0.986 45 H 0.026 0.974 46 H 0.251 0.749 47 H 0.036 0.964 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.395 16.605 -11.978 30.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.089 3.911 4 C -0.209 4.209 5 C -0.012 4.012 6 C -0.031 4.031 7 N -0.284 5.284 8 C -0.131 4.131 9 C -0.123 4.123 10 C -0.178 4.178 11 C 0.081 3.919 12 F -0.118 7.118 13 C -0.049 4.049 14 O -0.234 6.234 15 C 0.039 3.961 16 H 0.087 0.913 17 C -0.158 4.158 18 C 0.063 3.937 19 N -0.352 5.352 20 C -0.379 4.379 21 H 0.098 0.902 22 C -0.255 4.255 23 N -0.597 5.597 24 Si 0.811 3.189 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.194 1.194 28 C -0.002 4.002 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.135 0.865 32 H 0.184 0.816 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.174 0.826 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.032 0.968 45 H 0.044 0.956 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -21.679 16.226 -12.243 29.718 hybrid contribution 0.405 -0.234 1.299 1.381 sum -21.274 15.992 -10.944 28.777 Atomic orbital electron populations 1.23481 0.75749 1.05939 1.02819 1.86202 1.23952 1.25723 1.87848 1.19093 0.90048 0.86287 0.95644 1.21334 1.01396 0.89971 1.08221 1.19564 0.92238 0.95095 0.94276 1.21108 0.98466 0.93432 0.90076 1.61931 1.47588 1.03762 1.15095 1.22515 0.94888 0.96242 0.99441 1.22432 0.98196 0.88875 1.02752 1.21023 0.94095 0.96923 1.05741 1.18065 0.77230 0.93853 1.02710 1.91500 1.29557 1.97040 1.93668 1.18296 0.88584 0.85928 1.12116 1.86150 1.70143 1.38152 1.28941 1.23401 0.94898 0.94425 0.83354 0.91337 1.22803 1.00235 0.93278 0.99459 1.20951 0.92531 0.87161 0.93054 1.44663 1.49416 1.04866 1.36233 1.19439 1.16227 0.97527 1.04733 0.90248 1.25733 1.02502 0.95288 1.01942 1.70179 1.50477 1.00375 1.38638 0.84992 0.77793 0.77128 0.78990 1.20943 1.21686 1.19356 1.21958 0.93659 0.92163 0.92430 0.91097 0.90635 0.86542 0.81557 0.91595 0.88186 0.94176 0.90812 0.91971 0.90708 0.90706 0.94626 0.82570 0.88993 0.90763 0.96752 0.95613 0.94007 0.94572 0.96249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -8.35 10.28 -79.54 -0.82 -9.16 16 3 C 0.14 3.63 6.70 22.56 0.15 3.78 16 4 C -0.19 -3.54 6.95 22.36 0.16 -3.39 16 5 C -0.01 -0.20 4.88 -19.87 -0.10 -0.30 16 6 C 0.10 1.18 5.11 85.55 0.44 1.62 16 7 N -0.56 -7.17 5.01 -953.48 -4.78 -11.94 16 8 C 0.02 0.19 9.14 127.69 1.17 1.36 16 9 C 0.02 0.21 9.57 127.69 1.22 1.44 16 10 C -0.16 -3.70 9.67 22.31 0.22 -3.49 16 11 C 0.10 3.19 7.31 22.43 0.16 3.36 16 12 F -0.14 -5.06 16.50 44.97 0.74 -4.32 16 13 C 0.00 -0.12 5.65 22.59 0.13 0.01 16 14 O -0.32 -12.61 9.52 -80.24 -0.76 -13.37 16 15 C 0.10 4.04 3.56 31.99 0.11 4.15 16 16 H 0.07 2.86 7.99 -2.39 -0.02 2.84 16 17 C -0.12 -5.08 6.68 31.79 0.21 -4.87 16 18 C 0.19 10.03 5.39 86.73 0.47 10.49 16 19 N -0.62 -35.30 3.39 -691.95 -2.35 -37.65 16 20 C -0.25 -15.02 10.26 84.04 0.86 -14.16 16 21 H 0.08 4.59 7.84 -2.91 -0.02 4.57 16 22 C -0.06 -3.63 5.48 84.86 0.46 -3.17 16 23 N -0.95 -58.69 10.36 21.65 0.22 -58.47 16 24 Si 0.98 47.14 29.56 68.60 2.03 49.17 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 28 C 0.12 6.02 6.36 86.86 0.55 6.57 16 29 H 0.07 0.74 7.65 -2.38 -0.02 0.73 16 30 H 0.08 0.71 7.67 -2.39 -0.02 0.69 16 31 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.17 1.93 6.27 -2.90 -0.02 1.91 16 33 H 0.07 0.61 8.06 -2.39 -0.02 0.59 16 34 H 0.10 1.06 8.01 -2.39 -0.02 1.04 16 35 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.07 0.74 8.12 -2.39 -0.02 0.72 16 37 H 0.06 0.84 6.17 -2.39 -0.01 0.82 16 38 H 0.07 0.58 8.12 -2.39 -0.02 0.56 16 39 H 0.07 0.58 8.12 -2.39 -0.02 0.56 16 40 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 42 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 43 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 44 H 0.01 0.84 7.63 -2.39 -0.02 0.82 16 45 H 0.03 1.48 7.28 -2.38 -0.02 1.46 16 46 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 47 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -75.44 390.76 2.56 -72.87 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.95 Total: 8.17 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 7.33 Total: 4.71 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -6.90 Total: -108.06 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -1.58 Total: -22.53 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.74 Total: -4.32 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -75.44 2.56 -72.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234242810.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.009 kcal (2) G-P(sol) polarization free energy of solvation -75.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds