Wall clock time and date at job start Tue Mar 31 2020 21:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35994 * 117.00196 * 2 1 4 4 C 1.38623 * 120.06112 * 359.97438 * 3 2 1 5 5 C 1.38220 * 120.04416 * 180.02562 * 4 3 2 6 6 C 1.50694 * 119.92145 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.47172 * 90.00778 * 6 5 4 8 8 C 1.46904 * 111.00141 * 169.99774 * 7 6 5 9 9 C 1.46901 * 110.99716 * 293.94901 * 7 6 5 10 10 C 1.38266 * 120.15530 * 0.02562 * 5 4 3 11 11 C 1.38422 * 120.11796 * 359.74008 * 10 5 4 12 12 F 1.35098 * 120.01818 * 180.27796 * 11 10 5 13 13 C 1.38752 * 119.96229 * 0.51237 * 11 10 5 14 14 O 1.36053 * 120.08193 * 179.76635 * 13 11 10 15 15 C 1.42895 * 117.00281 * 269.72355 * 14 13 11 16 16 C 1.53514 * 114.17121 * 209.99896 * 15 14 13 17 17 N 1.47483 * 87.92777 * 220.32774 * 16 15 14 18 18 C 1.46903 * 110.99717 * 138.70421 * 17 16 15 19 19 C 1.50694 * 109.47066 * 169.99804 * 18 17 16 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 C 1.47480 * 87.83900 * 27.00973 * 17 16 15 28 28 H 1.09008 * 109.46765 * 299.99636 * 1 2 3 29 29 H 1.08999 * 109.47276 * 59.99505 * 1 2 3 30 30 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 31 31 H 1.08009 * 119.97836 * 359.97438 * 4 3 2 32 32 H 1.09006 * 109.46508 * 210.00278 * 6 5 4 33 33 H 1.08995 * 109.47247 * 329.99749 * 6 5 4 34 34 H 1.08997 * 109.46736 * 59.99649 * 8 7 6 35 35 H 1.09008 * 109.46708 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.46824 * 299.99604 * 8 7 6 37 37 H 1.09003 * 109.47176 * 60.00318 * 9 7 6 38 38 H 1.08994 * 109.47518 * 179.97438 * 9 7 6 39 39 H 1.08999 * 109.47221 * 300.00108 * 9 7 6 40 40 H 1.07995 * 119.94300 * 179.97438 * 10 5 4 41 41 H 1.09011 * 113.25486 * 342.94979 * 15 14 13 42 42 H 1.09000 * 113.47331 * 105.56452 * 16 15 14 43 43 H 1.08995 * 113.52785 * 335.10042 * 16 15 14 44 44 H 1.09007 * 109.47052 * 49.99488 * 18 17 16 45 45 H 1.09003 * 109.46808 * 290.00181 * 18 17 16 46 46 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 47 47 H 1.09004 * 113.47132 * 87.75237 * 27 17 16 48 48 H 1.09000 * 113.47538 * 218.21976 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2927 2.3751 -0.0005 5 6 1.9206 3.6065 -0.0011 6 6 1.0986 4.8694 -0.0022 7 7 0.8310 5.2808 1.3823 8 6 0.2403 6.6251 1.4273 9 6 -0.0291 4.3047 2.0646 10 6 3.3012 3.6821 -0.0016 11 6 4.0603 2.5246 0.0038 12 9 5.4091 2.6009 0.0090 13 6 3.4351 1.2859 -0.0009 14 8 4.1788 0.1466 -0.0004 15 6 4.5330 -0.3975 -1.2734 16 6 4.6934 -1.9242 -1.2817 17 7 5.8645 -1.7428 -2.1596 18 6 6.9565 -2.6465 -1.7739 19 6 8.0325 -2.6128 -2.8284 20 1 7.9166 -1.9834 -3.6984 21 6 9.1647 -3.3863 -2.6831 22 7 9.3056 -4.1532 -1.6240 23 14 10.4981 -3.3451 -3.9907 24 1 10.2205 -4.3849 -5.0138 25 1 10.5172 -2.0079 -4.6363 26 1 11.8168 -3.6097 -3.3612 27 6 6.0423 -0.4100 -1.5536 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.2141 2.3194 -0.0014 32 1 1.6466 5.6591 -0.5164 33 1 0.1547 4.6881 -0.5164 34 1 -0.6989 6.6279 0.8742 35 1 0.0519 6.9046 2.4640 36 1 0.9292 7.3399 0.9773 37 1 0.4640 3.3327 2.0779 38 1 -0.2110 4.6334 3.0878 39 1 -0.9780 4.2235 1.5345 40 1 3.7882 4.6460 -0.0024 41 1 3.9273 -0.0078 -2.0916 42 1 3.8660 -2.4451 -1.7637 43 1 4.9426 -2.3409 -0.3059 44 1 6.5717 -3.6620 -1.6797 45 1 7.3733 -2.3258 -0.8191 46 1 10.1019 -4.6976 -1.5220 47 1 6.6516 -0.4219 -0.6499 48 1 6.3581 0.3522 -2.2658 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234245142.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:47 Heat of formation + Delta-G solvation = -37.229384 kcal Electronic energy + Delta-G solvation = -29561.887515 eV Core-core repulsion = 25341.162043 eV Total energy + Delta-G solvation = -4220.725472 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.87648 -40.74225 -39.46378 -38.46340 -37.36559 -36.19305 -32.82771 -31.21294 -30.23467 -29.13847 -28.18670 -27.81121 -26.59254 -25.37796 -24.97419 -23.07633 -22.58007 -21.71643 -21.26115 -19.44272 -18.46663 -17.65145 -17.50473 -16.44763 -16.31263 -16.21434 -15.79815 -15.55872 -15.50059 -15.37697 -15.17613 -15.01705 -14.48727 -14.32914 -14.17669 -13.67710 -13.31600 -12.93452 -12.80650 -12.73958 -12.58473 -12.38353 -12.19722 -12.07952 -12.03863 -11.96175 -11.92176 -11.52944 -11.33424 -11.20837 -11.09871 -10.87085 -10.50846 -10.17371 -9.74953 -9.33787 -9.17748 -8.93765 -8.70418 -8.42036 -8.37952 -7.87717 -5.98969 -4.00076 0.73889 1.00304 2.85566 3.02727 3.35862 3.41051 3.45928 3.59779 3.78480 4.11995 4.29211 4.46996 4.61609 4.64366 4.72480 4.78720 4.85217 4.86928 4.91673 4.96465 4.99986 5.02148 5.04400 5.18215 5.21819 5.22799 5.33982 5.36320 5.42238 5.48756 5.53395 5.61417 5.83858 5.94500 6.09090 6.12431 6.21965 6.35141 6.42045 6.46820 6.49728 6.54073 6.63179 6.96483 7.24759 7.68205 7.68875 7.89493 8.13880 8.48913 9.06973 9.63485 11.12181 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.002316 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.816368 B =12089.452415 C =12958.539649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.296 6.296 3 C 0.138 3.862 4 C -0.205 4.205 5 C -0.024 4.024 6 C 0.094 3.906 7 N -0.541 5.541 8 C 0.024 3.976 9 C 0.018 3.982 10 C -0.159 4.159 11 C 0.124 3.876 12 F -0.120 7.120 13 C 0.038 3.962 14 O -0.303 6.303 15 C 0.057 3.943 16 C 0.003 3.997 17 N -0.463 5.463 18 C 0.161 3.839 19 C -0.504 4.504 20 H 0.063 0.937 21 C 0.053 3.947 22 N -0.899 5.899 23 Si 0.901 3.099 24 H -0.280 1.280 25 H -0.273 1.273 26 H -0.287 1.287 27 C -0.002 4.002 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.025 0.975 40 H 0.141 0.859 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.030 0.970 45 H 0.006 0.994 46 H 0.261 0.739 47 H 0.074 0.926 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.235 19.796 6.308 31.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.208 6.208 3 C 0.091 3.909 4 C -0.225 4.225 5 C -0.025 4.025 6 C -0.033 4.033 7 N -0.265 5.265 8 C -0.124 4.124 9 C -0.130 4.130 10 C -0.179 4.179 11 C 0.104 3.896 12 F -0.098 7.098 13 C -0.008 4.008 14 O -0.219 6.219 15 C 0.001 3.999 16 C -0.126 4.126 17 N -0.188 5.188 18 C 0.035 3.965 19 C -0.543 4.543 20 H 0.082 0.918 21 C -0.148 4.148 22 N -0.539 5.539 23 Si 0.728 3.272 24 H -0.206 1.206 25 H -0.198 1.198 26 H -0.213 1.213 27 C -0.131 4.131 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.152 0.848 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.044 0.956 40 H 0.159 0.841 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.024 0.976 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.494 19.279 6.071 30.992 hybrid contribution 0.152 0.051 -0.271 0.315 sum -23.341 19.330 5.800 30.856 Atomic orbital electron populations 1.23134 0.78319 1.04395 1.01151 1.86247 1.21181 1.25468 1.87901 1.19040 0.90827 0.85089 0.95899 1.21026 1.00060 0.91142 1.10239 1.19197 0.92756 0.93819 0.96682 1.21058 0.98033 0.94569 0.89620 1.61959 1.46785 1.02756 1.14995 1.22408 0.97767 0.89941 1.02266 1.22511 0.94559 0.97043 0.98897 1.20800 0.93323 0.97434 1.06330 1.17704 0.77750 0.92851 1.01264 1.91560 1.28019 1.96923 1.93300 1.17917 0.87366 0.86585 1.08945 1.86270 1.69053 1.36701 1.29859 1.24432 0.96579 0.95212 0.83694 1.24040 0.97186 0.93487 0.97913 1.68998 1.05739 1.02842 1.41181 1.20273 0.88443 0.91925 0.95814 1.21094 1.01780 1.25123 1.06272 0.91838 1.25018 0.98417 0.95455 0.95924 1.69964 1.28492 1.27576 1.27884 0.86456 0.80812 0.78425 0.81472 1.20641 1.19826 1.21293 1.24266 0.94327 0.95449 0.99040 0.92648 0.92597 0.87817 0.84824 0.89230 0.93431 0.95576 0.91086 0.91087 0.90723 0.91225 0.95629 0.84091 0.88804 0.90082 0.91044 0.95165 0.97593 0.92919 0.90749 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.64 10.28 -34.27 -0.35 -3.99 16 3 C 0.14 1.72 6.70 -39.13 -0.26 1.46 16 4 C -0.21 -1.93 6.95 -39.45 -0.27 -2.20 16 5 C -0.02 -0.22 4.88 -104.62 -0.51 -0.73 16 6 C 0.09 0.65 5.11 -4.98 -0.03 0.62 16 7 N -0.54 -3.90 5.01 -252.72 -1.27 -5.17 16 8 C 0.02 0.13 9.57 60.07 0.57 0.70 16 9 C 0.02 0.12 9.14 60.07 0.55 0.66 16 10 C -0.16 -1.73 9.67 -39.50 -0.38 -2.11 16 11 C 0.12 1.74 7.31 -39.32 -0.29 1.45 16 12 F -0.12 -1.89 17.11 2.25 0.04 -1.86 16 13 C 0.04 0.57 5.63 -39.09 -0.22 0.35 16 14 O -0.30 -5.41 9.76 -34.46 -0.34 -5.75 16 15 C 0.06 1.02 4.72 -26.20 -0.12 0.90 16 16 C 0.00 0.06 7.52 -7.53 -0.06 0.00 16 17 N -0.46 -10.77 6.32 -246.08 -1.55 -12.32 16 18 C 0.16 4.43 4.57 -4.98 -0.02 4.41 16 19 C -0.50 -14.89 9.39 -34.44 -0.32 -15.22 16 20 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 21 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 22 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 23 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 27 C 0.00 -0.03 7.55 -7.54 -0.06 -0.09 16 28 H 0.05 0.31 7.66 -51.92 -0.40 -0.09 16 29 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.13 0.91 6.27 -52.48 -0.33 0.58 16 32 H 0.09 0.53 8.01 -51.93 -0.42 0.12 16 33 H 0.05 0.28 8.06 -51.93 -0.42 -0.14 16 34 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.07 0.33 8.12 -51.92 -0.42 -0.09 16 36 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 37 H 0.07 0.56 6.16 -51.93 -0.32 0.24 16 38 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 39 H 0.03 0.14 8.14 -51.93 -0.42 -0.29 16 40 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.09 1.57 7.96 -51.92 -0.41 1.15 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 43 H 0.07 1.45 7.91 -51.93 -0.41 1.04 16 44 H 0.03 0.87 8.08 -51.92 -0.42 0.46 16 45 H 0.01 0.18 7.30 -51.93 -0.38 -0.20 16 46 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.07 1.64 7.42 -51.93 -0.39 1.26 16 48 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 398.35 15.07 6.00 6.00 Total: -1.00 -33.72 398.35 -9.91 -43.63 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -7.63 Total: -3.94 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.53 Total: -7.15 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -2.08 Total: -44.30 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.69 Total: -9.74 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.72 -9.91 -43.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234245142.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.402 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds