Wall clock time and date at job start Tue Mar 31 2020 21:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35994 * 117.00196 * 2 1 4 4 C 1.38623 * 120.06112 * 359.97438 * 3 2 1 5 5 C 1.38220 * 120.04416 * 180.02562 * 4 3 2 6 6 C 1.50694 * 119.92145 * 179.97438 * 5 4 3 7 7 N 1.46895 * 109.47172 * 90.00778 * 6 5 4 8 8 C 1.46904 * 111.00141 * 169.99774 * 7 6 5 9 9 C 1.46901 * 110.99716 * 293.94901 * 7 6 5 10 10 C 1.38266 * 120.15530 * 0.02562 * 5 4 3 11 11 C 1.38422 * 120.11796 * 359.74008 * 10 5 4 12 12 F 1.35098 * 120.01818 * 180.27796 * 11 10 5 13 13 C 1.38752 * 119.96229 * 0.51237 * 11 10 5 14 14 O 1.36053 * 120.08193 * 179.76635 * 13 11 10 15 15 C 1.42895 * 117.00281 * 269.72355 * 14 13 11 16 16 C 1.53514 * 114.17121 * 209.99896 * 15 14 13 17 17 N 1.47483 * 87.92777 * 220.32774 * 16 15 14 18 18 C 1.46903 * 110.99717 * 138.70421 * 17 16 15 19 19 C 1.50694 * 109.47066 * 169.99804 * 18 17 16 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47353 * 269.99586 * 23 21 19 25 25 H 1.48501 * 109.47293 * 30.00037 * 23 21 19 26 26 H 1.48504 * 109.46680 * 149.99835 * 23 21 19 27 27 C 1.47480 * 87.83900 * 27.00973 * 17 16 15 28 28 H 1.09008 * 109.46765 * 299.99636 * 1 2 3 29 29 H 1.08999 * 109.47276 * 59.99505 * 1 2 3 30 30 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 31 31 H 1.08009 * 119.97836 * 359.97438 * 4 3 2 32 32 H 1.09006 * 109.46508 * 210.00278 * 6 5 4 33 33 H 1.08995 * 109.47247 * 329.99749 * 6 5 4 34 34 H 1.08997 * 109.46736 * 59.99649 * 8 7 6 35 35 H 1.09008 * 109.46708 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.46824 * 299.99604 * 8 7 6 37 37 H 1.09003 * 109.47176 * 60.00318 * 9 7 6 38 38 H 1.08994 * 109.47518 * 179.97438 * 9 7 6 39 39 H 1.08999 * 109.47221 * 300.00108 * 9 7 6 40 40 H 1.07995 * 119.94300 * 179.97438 * 10 5 4 41 41 H 1.09011 * 113.25486 * 342.94979 * 15 14 13 42 42 H 1.09000 * 113.47331 * 105.56452 * 16 15 14 43 43 H 1.08995 * 113.52785 * 335.10042 * 16 15 14 44 44 H 1.09007 * 109.47052 * 49.99488 * 18 17 16 45 45 H 1.09003 * 109.46808 * 290.00181 * 18 17 16 46 46 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 47 47 H 1.09004 * 113.47132 * 87.75237 * 27 17 16 48 48 H 1.09000 * 113.47538 * 218.21976 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2927 2.3751 -0.0005 5 6 1.9206 3.6065 -0.0011 6 6 1.0986 4.8694 -0.0022 7 7 0.8310 5.2808 1.3823 8 6 0.2403 6.6251 1.4273 9 6 -0.0291 4.3047 2.0646 10 6 3.3012 3.6821 -0.0016 11 6 4.0603 2.5246 0.0038 12 9 5.4091 2.6009 0.0090 13 6 3.4351 1.2859 -0.0009 14 8 4.1788 0.1466 -0.0004 15 6 4.5330 -0.3975 -1.2734 16 6 4.6934 -1.9242 -1.2817 17 7 5.8645 -1.7428 -2.1596 18 6 6.9565 -2.6465 -1.7739 19 6 8.0325 -2.6128 -2.8284 20 1 7.9166 -1.9834 -3.6984 21 6 9.1647 -3.3863 -2.6831 22 7 9.3056 -4.1532 -1.6240 23 14 10.4981 -3.3451 -3.9907 24 1 10.2205 -4.3849 -5.0138 25 1 10.5172 -2.0079 -4.6363 26 1 11.8168 -3.6097 -3.3612 27 6 6.0423 -0.4100 -1.5536 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.2141 2.3194 -0.0014 32 1 1.6466 5.6591 -0.5164 33 1 0.1547 4.6881 -0.5164 34 1 -0.6989 6.6279 0.8742 35 1 0.0519 6.9046 2.4640 36 1 0.9292 7.3399 0.9773 37 1 0.4640 3.3327 2.0779 38 1 -0.2110 4.6334 3.0878 39 1 -0.9780 4.2235 1.5345 40 1 3.7882 4.6460 -0.0024 41 1 3.9273 -0.0078 -2.0916 42 1 3.8660 -2.4451 -1.7637 43 1 4.9426 -2.3409 -0.3059 44 1 6.5717 -3.6620 -1.6797 45 1 7.3733 -2.3258 -0.8191 46 1 10.1019 -4.6976 -1.5220 47 1 6.6516 -0.4219 -0.6499 48 1 6.3581 0.3522 -2.2658 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234245142.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:46 Heat of formation + Delta-G solvation = -61.741967 kcal Electronic energy + Delta-G solvation = -29562.950461 eV Core-core repulsion = 25341.162043 eV Total energy + Delta-G solvation = -4221.788418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.99493 -41.75336 -40.92760 -39.12881 -38.55054 -37.06388 -35.04974 -32.16511 -31.09639 -31.00458 -28.74268 -28.28367 -27.60652 -27.08175 -26.67082 -24.03567 -23.56010 -23.21895 -22.06803 -21.10917 -19.57983 -18.72448 -18.45184 -18.42344 -17.45128 -17.22075 -16.86007 -16.42190 -16.39603 -16.32155 -16.15491 -16.00970 -15.82770 -15.81738 -15.56395 -14.69016 -14.53404 -14.33129 -14.08732 -13.78316 -13.69612 -13.34751 -13.26223 -13.13543 -13.03750 -12.93510 -12.78471 -12.61181 -12.50073 -12.46387 -12.32850 -12.20327 -12.07090 -11.84367 -11.71947 -11.28458 -10.78825 -10.64376 -9.91079 -9.71289 -9.32090 -9.23304 -8.25537 -6.36805 -0.19380 0.12620 1.38281 1.41062 1.52596 2.03049 2.14958 2.37747 2.59341 3.06029 3.18228 3.23042 3.29587 3.34078 3.58353 3.82843 3.86308 3.91429 4.12926 4.17554 4.26748 4.32876 4.36015 4.40403 4.41364 4.52513 4.56441 4.57730 4.60339 4.67693 4.74477 4.75191 4.78287 4.81164 4.84136 4.87074 4.97830 5.01711 5.07437 5.09924 5.31598 5.49927 5.53603 5.68693 5.99742 6.03611 6.09314 6.10619 6.33388 6.52430 6.76400 7.32439 8.86102 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.002316 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.816368 B =12089.452415 C =12958.539649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.137 3.863 4 C -0.189 4.189 5 C -0.010 4.010 6 C 0.096 3.904 7 N -0.560 5.560 8 C 0.025 3.975 9 C 0.017 3.983 10 C -0.157 4.157 11 C 0.102 3.898 12 F -0.140 7.140 13 C -0.005 4.005 14 O -0.320 6.320 15 C 0.085 3.915 16 C 0.003 3.997 17 N -0.474 5.474 18 C 0.177 3.823 19 C -0.529 4.529 20 H 0.061 0.939 21 C -0.001 4.001 22 N -0.934 5.934 23 Si 0.977 3.023 24 H -0.269 1.269 25 H -0.265 1.265 26 H -0.279 1.279 27 C -0.006 4.006 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.167 0.833 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.157 0.843 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.006 0.994 45 H -0.023 1.023 46 H 0.266 0.734 47 H 0.053 0.947 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.657 21.865 5.286 34.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.091 3.909 4 C -0.208 4.208 5 C -0.011 4.011 6 C -0.031 4.031 7 N -0.284 5.284 8 C -0.122 4.122 9 C -0.131 4.131 10 C -0.176 4.176 11 C 0.082 3.918 12 F -0.119 7.119 13 C -0.050 4.050 14 O -0.236 6.236 15 C 0.028 3.972 16 C -0.126 4.126 17 N -0.198 5.198 18 C 0.050 3.950 19 C -0.567 4.567 20 H 0.079 0.921 21 C -0.199 4.199 22 N -0.574 5.574 23 Si 0.800 3.200 24 H -0.194 1.194 25 H -0.190 1.190 26 H -0.204 1.204 27 C -0.135 4.135 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.133 0.867 31 H 0.184 0.816 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.175 0.825 41 H 0.130 0.870 42 H 0.121 0.879 43 H 0.077 0.923 44 H 0.024 0.976 45 H -0.005 1.005 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -25.953 21.365 5.058 33.994 hybrid contribution 0.722 -0.501 0.148 0.891 sum -25.231 20.864 5.206 33.151 Atomic orbital electron populations 1.23479 0.75731 1.05893 1.02866 1.86210 1.23944 1.25730 1.87804 1.19084 0.90026 0.86259 0.95580 1.21337 1.01415 0.89962 1.08091 1.19569 0.92263 0.95063 0.94180 1.21119 0.98539 0.93473 0.90008 1.61931 1.47733 1.03724 1.15048 1.22430 0.98219 0.88890 1.02711 1.22512 0.94949 0.96266 0.99364 1.21025 0.94038 0.96934 1.05623 1.18032 0.77153 0.93753 1.02818 1.91500 1.29617 1.97051 1.93708 1.18275 0.88511 0.85772 1.12458 1.86234 1.69895 1.38236 1.29248 1.24049 0.94370 0.93804 0.84930 1.24055 0.96240 0.95456 0.96876 1.68891 1.05496 1.03210 1.42226 1.19931 0.89389 0.91470 0.94185 1.21396 1.02965 1.25650 1.06670 0.92102 1.26019 1.00927 0.94643 0.98357 1.70092 1.29437 1.28091 1.29785 0.85278 0.77365 0.78938 0.78401 1.19415 1.18965 1.20413 1.24246 0.96797 0.94320 0.98143 0.90872 0.90760 0.86680 0.81605 0.88074 0.91531 0.94591 0.90856 0.90643 0.91983 0.90976 0.94122 0.82532 0.86975 0.87893 0.92316 0.97574 1.00525 0.92482 0.92916 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.28 16 2 O -0.32 -7.54 10.28 -79.57 -0.82 -8.36 16 3 C 0.14 3.26 6.70 22.56 0.15 3.41 16 4 C -0.19 -3.01 6.95 22.36 0.16 -2.85 16 5 C -0.01 -0.16 4.88 -19.86 -0.10 -0.25 16 6 C 0.10 0.96 5.11 85.56 0.44 1.40 16 7 N -0.56 -6.31 5.01 -953.48 -4.78 -11.09 16 8 C 0.03 0.18 9.57 127.69 1.22 1.40 16 9 C 0.02 0.17 9.14 127.69 1.17 1.33 16 10 C -0.16 -3.20 9.67 22.32 0.22 -2.98 16 11 C 0.10 2.90 7.31 22.44 0.16 3.06 16 12 F -0.14 -4.66 17.11 44.97 0.77 -3.89 16 13 C 0.00 -0.14 5.63 22.59 0.13 -0.01 16 14 O -0.32 -11.87 9.76 -80.25 -0.78 -12.65 16 15 C 0.08 3.13 4.72 30.94 0.15 3.28 16 16 C 0.00 0.11 7.52 83.58 0.63 0.74 16 17 N -0.47 -22.92 6.32 -932.86 -5.89 -28.81 16 18 C 0.18 10.25 4.57 85.55 0.39 10.64 16 19 C -0.53 -32.18 9.39 25.60 0.24 -31.94 16 20 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 21 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 22 N -0.93 -58.64 13.29 21.45 0.28 -58.35 16 23 Si 0.98 46.27 29.54 68.60 2.03 48.29 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 C -0.01 -0.25 7.55 83.58 0.63 0.38 16 28 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 29 H 0.07 0.58 7.66 -2.39 -0.02 0.57 16 30 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.17 1.53 6.27 -2.91 -0.02 1.51 16 32 H 0.10 0.82 8.01 -2.38 -0.02 0.80 16 33 H 0.07 0.46 8.06 -2.39 -0.02 0.44 16 34 H 0.04 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.07 0.50 8.12 -2.38 -0.02 0.48 16 36 H 0.07 0.48 8.12 -2.39 -0.02 0.46 16 37 H 0.06 0.76 6.16 -2.39 -0.01 0.74 16 38 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 39 H 0.04 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.11 3.71 7.96 -2.38 -0.02 3.69 16 42 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 43 H 0.06 2.52 7.91 -2.39 -0.02 2.50 16 44 H 0.01 0.38 8.08 -2.38 -0.02 0.36 16 45 H -0.02 -1.43 7.30 -2.39 -0.02 -1.45 16 46 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 47 H 0.05 2.52 7.42 -2.39 -0.02 2.50 16 48 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -76.05 398.35 -1.08 -77.13 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.95 Total: 8.46 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 7.15 Total: -10.74 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -10.38 Total: -98.25 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -1.60 Total: -21.01 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.77 Total: -3.89 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -76.05 -1.08 -77.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234245142.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.391 kcal (2) G-P(sol) polarization free energy of solvation -76.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds