Wall clock time and date at job start Tue Mar 31 2020 21:39:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45195 * 1
3 3 C 1.34782 * 117.00507 * 2 1
4 4 O 1.21552 * 119.99703 * 0.02562 * 3 2 1
5 5 C 1.47085 * 120.00606 * 179.97438 * 3 2 1
6 6 C 1.40334 * 120.24383 * 89.97593 * 5 3 2
7 7 O 1.35647 * 120.12280 * 0.02562 * 6 5 3
8 8 C 1.42905 * 116.99811 * 179.97438 * 7 6 5
9 9 C 1.38510 * 119.75293 * 180.02562 * 6 5 3
10 10 C 1.38275 * 120.24135 * 0.02562 * 9 6 5
11 11 C 1.38227 * 120.50180 * 359.74369 * 10 9 6
12 12 C 1.38563 * 120.23995 * 0.51155 * 11 10 9
13 13 O 1.35638 * 120.12632 * 179.76670 * 12 11 10
14 14 C 1.42902 * 116.99851 * 1.76790 * 13 12 11
15 15 H 1.09003 * 109.47159 * 36.56393 * 14 13 12
16 16 C 1.50702 * 109.47151 * 276.55831 * 14 13 12
17 17 H 1.08001 * 119.99526 * 125.11146 * 16 14 13
18 18 C 1.37872 * 120.00281 * 305.11211 * 16 14 13
19 19 N 1.31522 * 119.99647 * 6.20238 * 18 16 14
20 20 Si 1.86794 * 120.00087 * 185.92453 * 18 16 14
21 21 H 1.48501 * 109.47192 * 84.99644 * 20 18 16
22 22 H 1.48503 * 109.47314 * 204.99348 * 20 18 16
23 23 H 1.48499 * 109.47327 * 324.99141 * 20 18 16
24 24 C 1.53000 * 109.47193 * 156.55998 * 14 13 12
25 25 N 1.46902 * 109.47391 * 293.48127 * 24 14 13
26 26 C 1.46903 * 109.47197 * 63.27110 * 25 24 14
27 27 C 1.46892 * 109.47267 * 183.27278 * 25 24 14
28 28 C 1.46901 * 109.46801 * 303.27119 * 25 24 14
29 29 H 1.09002 * 109.46792 * 59.99634 * 1 2 3
30 30 H 1.09000 * 109.47254 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.46939 * 300.00269 * 1 2 3
32 32 H 1.09004 * 109.47056 * 179.97438 * 8 7 6
33 33 H 1.08998 * 109.46994 * 299.99644 * 8 7 6
34 34 H 1.09000 * 109.47481 * 59.99895 * 8 7 6
35 35 H 1.07997 * 119.88201 * 180.02562 * 9 6 5
36 36 H 1.08006 * 119.74983 * 180.02562 * 10 9 6
37 37 H 1.07998 * 119.88257 * 180.25971 * 11 10 9
38 38 H 0.96997 * 119.99281 * 179.72406 * 19 18 16
39 39 H 1.09007 * 109.47182 * 53.47995 * 24 14 13
40 40 H 1.08996 * 109.47501 * 173.47626 * 24 14 13
41 41 H 1.08995 * 109.47155 * 50.22479 * 26 25 24
42 42 H 1.08994 * 109.47196 * 170.22869 * 26 25 24
43 43 H 1.09001 * 109.46908 * 290.22510 * 26 25 24
44 44 H 1.09002 * 109.47505 * 59.99595 * 27 25 24
45 45 H 1.09001 * 109.47625 * 180.02562 * 27 25 24
46 46 H 1.09003 * 109.47282 * 299.99506 * 27 25 24
47 47 H 1.09006 * 109.46682 * 60.00169 * 28 25 24
48 48 H 1.08996 * 109.47148 * 179.97438 * 28 25 24
49 49 H 1.08996 * 109.47139 * 300.00074 * 28 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4519 0.0000 0.0000
3 6 2.0640 1.2009 0.0000
4 8 1.4020 2.2203 0.0005
5 6 3.5328 1.2779 0.0006
6 6 4.2392 1.3141 -1.2115
7 8 3.5698 1.2788 -2.3908
8 6 4.3552 1.3197 -3.5840
9 6 5.6223 1.3861 -1.1991
10 6 6.3071 1.4217 0.0017
11 6 5.6214 1.3913 1.2015
12 6 4.2380 1.3140 1.2129
13 8 3.5678 1.2796 2.3916
14 6 4.3492 1.3656 3.5850
15 1 5.1851 2.0464 3.4236
16 6 4.8756 -0.0010 3.9404
17 1 5.9359 -0.1517 4.0799
18 6 4.0037 -1.0588 4.0875
19 7 2.7296 -0.9057 3.7994
20 14 4.6334 -2.7116 4.6884
21 1 4.6677 -2.7182 6.1730
22 1 3.7307 -3.7891 4.2094
23 1 6.0022 -2.9415 4.1606
24 6 3.4781 1.8898 4.7284
25 7 3.0929 3.2804 4.4528
26 6 2.2705 3.3288 3.2365
27 6 2.3224 3.8089 5.5862
28 6 4.3008 4.0939 4.2599
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5139 0.8900
32 1 3.6981 1.2846 -4.4529
33 1 4.9367 2.2414 -3.6047
34 1 5.0300 0.4639 -3.6044
35 1 6.1680 1.4145 -2.1306
36 1 7.3857 1.4782 0.0021
37 1 6.1661 1.4238 2.1335
38 1 2.1170 -1.6511 3.8991
39 1 2.5822 1.2748 4.8139
40 1 4.0390 1.8464 5.6619
41 1 1.4684 2.5945 3.3108
42 1 1.8420 4.3250 3.1271
43 1 2.8908 3.1028 2.3692
44 1 2.9326 3.7729 6.4887
45 1 2.0362 4.8405 5.3816
46 1 1.4262 3.2052 5.7294
47 1 4.8725 3.7017 3.4187
48 1 4.0150 5.1256 4.0549
49 1 4.9110 4.0580 5.1623
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001234598875.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:39:22
Heat of formation + Delta-G solvation = -14.596854 kcal
Electronic energy + Delta-G solvation = -32627.866814 eV
Core-core repulsion = 28447.520144 eV
Total energy + Delta-G solvation = -4180.346670 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.185 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-43.40788 -41.53382 -40.27259 -39.74056 -37.25288 -36.83290 -34.66618 -32.47120
-31.58893 -30.50389 -30.30684 -29.95921 -28.53647 -28.11973 -27.71114 -25.12156
-24.72860 -23.63948 -22.06772 -21.64796 -19.74987 -19.07750 -18.63899 -18.37496
-18.28435 -17.83043 -17.60885 -17.34776 -17.05616 -16.60998 -16.30021 -16.14864
-15.64924 -15.52604 -15.30822 -14.97980 -14.78073 -14.27717 -14.26080 -14.17335
-14.00063 -13.98723 -13.74209 -13.63705 -13.52228 -13.35805 -13.25287 -12.88711
-12.79650 -12.69471 -12.38672 -12.17358 -12.12374 -11.98052 -11.57435 -11.30752
-11.29829 -11.00584 -10.83514 -10.16908 -9.33480 -8.79315 -7.75269 -6.00546
0.27974 0.33437 0.69427 1.58171 1.97232 2.10191 2.21999 2.24425
2.27313 2.30256 2.31191 2.34054 2.81538 2.91919 3.01202 3.13285
3.19855 3.38754 3.48151 3.61878 3.67623 3.70685 3.74334 3.83366
3.93877 4.04724 4.09372 4.16197 4.22072 4.24904 4.29175 4.34513
4.41112 4.45308 4.51083 4.58165 4.60449 4.65227 4.83773 4.90471
4.96352 5.31815 5.43004 5.64930 5.66368 5.81841 6.03560 6.22686
6.42170 6.71655 7.16172 7.17769 7.84085 9.25562
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 O -0.339 6.339
3 C 0.551 3.449
4 O -0.516 6.516
5 C -0.200 4.200
6 C 0.202 3.798
7 O -0.314 6.314
8 C 0.028 3.972
9 C -0.260 4.260
10 C -0.019 4.019
11 C -0.241 4.241
12 C 0.236 3.764
13 O -0.291 6.291
14 C 0.191 3.809
15 H 0.052 0.948
16 C -0.573 4.573
17 H 0.081 0.919
18 C 0.092 3.908
19 N -0.842 5.842
20 Si 0.901 3.099
21 H -0.272 1.272
22 H -0.278 1.278
23 H -0.267 1.267
24 C 0.003 3.997
25 N -0.274 5.274
26 C -0.038 4.038
27 C -0.041 4.041
28 C -0.047 4.047
29 H 0.059 0.941
30 H 0.099 0.901
31 H 0.061 0.939
32 H 0.103 0.897
33 H 0.060 0.940
34 H 0.061 0.939
35 H 0.133 0.867
36 H 0.130 0.870
37 H 0.143 0.857
38 H 0.278 0.722
39 H 0.146 0.854
40 H 0.128 0.872
41 H 0.119 0.881
42 H 0.102 0.898
43 H 0.128 0.872
44 H 0.114 0.886
45 H 0.110 0.890
46 H 0.116 0.884
47 H 0.118 0.882
48 H 0.112 0.888
49 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.454 14.074 3.604 14.535
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 O -0.254 6.254
3 C 0.395 3.605
4 O -0.405 6.405
5 C -0.202 4.202
6 C 0.155 3.845
7 O -0.226 6.226
8 C -0.067 4.067
9 C -0.279 4.279
10 C -0.038 4.038
11 C -0.260 4.260
12 C 0.187 3.813
13 O -0.203 6.203
14 C 0.137 3.863
15 H 0.069 0.931
16 C -0.609 4.609
17 H 0.099 0.901
18 C -0.121 4.121
19 N -0.474 5.474
20 Si 0.726 3.274
21 H -0.197 1.197
22 H -0.203 1.203
23 H -0.191 1.191
24 C -0.116 4.116
25 N 0.067 4.933
26 C -0.178 4.178
27 C -0.183 4.183
28 C -0.189 4.189
29 H 0.077 0.923
30 H 0.117 0.883
31 H 0.080 0.920
32 H 0.121 0.879
33 H 0.078 0.922
34 H 0.080 0.920
35 H 0.151 0.849
36 H 0.148 0.852
37 H 0.160 0.840
38 H 0.089 0.911
39 H 0.164 0.836
40 H 0.146 0.854
41 H 0.137 0.863
42 H 0.121 0.879
43 H 0.147 0.853
44 H 0.132 0.868
45 H 0.129 0.871
46 H 0.134 0.866
47 H 0.137 0.863
48 H 0.130 0.870
49 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -0.422 14.235 3.617 14.693
hybrid contribution 0.447 -1.164 0.154 1.256
sum 0.024 13.072 3.771 13.605
Atomic orbital electron populations
1.23214 0.76642 1.03630 1.01963 1.86739 1.22929 1.32588 1.83122
1.20499 0.88230 0.81425 0.70370 1.90779 1.66903 1.36318 1.46464
1.17335 0.89880 1.22647 0.90364 1.18445 0.90133 0.91772 0.84141
1.86022 1.36340 1.87537 1.12704 1.23152 0.97061 1.01807 0.84660
1.20959 0.92027 1.15039 0.99858 1.20879 0.99873 0.91856 0.91149
1.21153 0.92649 1.12469 0.99680 1.18283 0.90032 0.88347 0.84681
1.86238 1.37678 1.84509 1.11910 1.20450 0.87478 0.98694 0.79685
0.93094 1.21141 0.94980 0.91336 1.53424 0.90123 1.25051 0.94772
1.00005 0.92229 1.69833 1.03194 1.33862 1.40497 0.86393 0.79888
0.81711 0.79362 1.19718 1.20299 1.19092 1.24801 1.07371 0.75907
1.03521 1.46433 1.14640 1.17186 1.15036 1.24284 0.99473 1.06740
0.87349 1.24009 1.00296 1.03875 0.90071 1.24078 0.88125 0.98164
1.08501 0.92256 0.88277 0.92038 0.87903 0.92183 0.92046 0.84914
0.85248 0.83963 0.91148 0.83592 0.85422 0.86257 0.87920 0.85345
0.86753 0.87102 0.86572 0.86334 0.86992 0.86480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.14 10.57 101.05 1.07 1.21 16
2 O -0.34 -2.54 10.58 -40.71 -0.43 -2.97 16
3 C 0.55 3.87 6.46 34.32 0.22 4.09 16
4 O -0.52 -3.78 16.90 -19.31 -0.33 -4.10 16
5 C -0.20 -1.17 5.77 -104.75 -0.60 -1.77 16
6 C 0.20 0.95 6.70 -38.69 -0.26 0.69 16
7 O -0.31 -1.42 9.95 -18.64 -0.19 -1.61 16
8 C 0.03 0.00 9.81 101.05 0.99 0.99 16
9 C -0.26 -0.60 9.02 -39.47 -0.36 -0.95 16
10 C -0.02 -0.03 10.02 -39.57 -0.40 -0.43 16
11 C -0.24 -0.59 8.71 -39.47 -0.34 -0.93 16
12 C 0.24 0.98 6.08 -38.69 -0.24 0.74 16
13 O -0.29 -0.88 5.15 -18.61 -0.10 -0.97 16
14 C 0.19 0.11 1.39 -27.88 -0.04 0.07 16
15 H 0.05 -0.11 3.95 -51.93 -0.21 -0.31 16
16 C -0.57 -3.41 8.04 -34.44 -0.28 -3.69 16
17 H 0.08 0.55 7.82 -52.49 -0.41 0.14 16
18 C 0.09 0.77 5.23 -17.82 -0.09 0.68 16
19 N -0.84 -7.44 11.23 55.43 0.62 -6.82 16
20 Si 0.90 7.86 29.54 -169.99 -5.02 2.84 16
21 H -0.27 -2.37 7.11 56.52 0.40 -1.97 16
22 H -0.28 -2.87 7.11 56.52 0.40 -2.46 16
23 H -0.27 -2.58 7.11 56.52 0.40 -2.17 16
24 C 0.00 -0.01 3.59 -3.82 -0.01 -0.02 16
25 N -0.27 2.51 0.05 -395.63 -0.02 2.49 16
26 C -0.04 0.24 7.10 60.07 0.43 0.67 16
27 C -0.04 0.49 8.00 60.06 0.48 0.97 16
28 C -0.05 0.51 7.57 60.07 0.45 0.97 16
29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16
30 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16
31 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16
32 H 0.10 -0.16 8.14 -51.93 -0.42 -0.59 16
33 H 0.06 -0.09 7.66 -51.93 -0.40 -0.49 16
34 H 0.06 -0.06 7.66 -51.93 -0.40 -0.45 16
35 H 0.13 -0.01 6.28 -52.49 -0.33 -0.34 16
36 H 0.13 -0.13 8.06 -52.48 -0.42 -0.56 16
37 H 0.14 0.17 5.68 -52.49 -0.30 -0.13 16
38 H 0.28 2.69 8.31 -40.82 -0.34 2.35 16
39 H 0.15 -0.18 6.76 -51.93 -0.35 -0.53 16
40 H 0.13 -0.74 8.11 -51.93 -0.42 -1.16 16
41 H 0.12 -0.52 7.95 -51.93 -0.41 -0.94 16
42 H 0.10 -0.94 8.00 -51.93 -0.42 -1.35 16
43 H 0.13 -0.42 5.22 -51.93 -0.27 -0.69 16
44 H 0.11 -1.50 8.13 -51.93 -0.42 -1.92 16
45 H 0.11 -1.51 8.07 -51.93 -0.42 -1.93 16
46 H 0.12 -1.32 8.14 -51.93 -0.42 -1.74 16
47 H 0.12 -1.08 5.88 -51.93 -0.31 -1.38 16
48 H 0.11 -1.44 8.14 -51.93 -0.42 -1.86 16
49 H 0.12 -1.45 8.14 -51.93 -0.42 -1.87 16
LS Contribution 389.29 15.07 5.87 5.87
Total: 0.00 -18.97 389.29 -6.14 -25.11
By element:
Atomic # 1 Polarization: -15.55 SS G_CDS: -7.57 Total: -23.12 kcal
Atomic # 6 Polarization: 2.26 SS G_CDS: 1.02 Total: 3.29 kcal
Atomic # 7 Polarization: -4.93 SS G_CDS: 0.60 Total: -4.33 kcal
Atomic # 8 Polarization: -8.61 SS G_CDS: -1.04 Total: -9.65 kcal
Atomic # 14 Polarization: 7.86 SS G_CDS: -5.02 Total: 2.84 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -18.97 -6.14 -25.11 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001234598875.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.509 kcal
(2) G-P(sol) polarization free energy of solvation -18.967 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.458 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.106 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.597 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds