Wall clock time and date at job start Tue Mar 31 2020 21:39:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45195 * 1
3 3 C 1.34782 * 117.00507 * 2 1
4 4 O 1.21552 * 119.99703 * 0.02562 * 3 2 1
5 5 C 1.47085 * 120.00606 * 179.97438 * 3 2 1
6 6 C 1.40334 * 120.24383 * 89.97593 * 5 3 2
7 7 O 1.35647 * 120.12280 * 0.02562 * 6 5 3
8 8 C 1.42905 * 116.99811 * 179.97438 * 7 6 5
9 9 C 1.38510 * 119.75293 * 180.02562 * 6 5 3
10 10 C 1.38275 * 120.24135 * 0.02562 * 9 6 5
11 11 C 1.38227 * 120.50180 * 359.74369 * 10 9 6
12 12 C 1.38563 * 120.23995 * 0.51155 * 11 10 9
13 13 O 1.35638 * 120.12632 * 179.76670 * 12 11 10
14 14 C 1.42902 * 116.99851 * 1.76790 * 13 12 11
15 15 H 1.09003 * 109.47159 * 36.56393 * 14 13 12
16 16 C 1.50702 * 109.47151 * 276.55831 * 14 13 12
17 17 H 1.08001 * 119.99526 * 125.11146 * 16 14 13
18 18 C 1.37872 * 120.00281 * 305.11211 * 16 14 13
19 19 N 1.31522 * 119.99647 * 6.20238 * 18 16 14
20 20 Si 1.86794 * 120.00087 * 185.92453 * 18 16 14
21 21 H 1.48501 * 109.47192 * 84.99644 * 20 18 16
22 22 H 1.48503 * 109.47314 * 204.99348 * 20 18 16
23 23 H 1.48499 * 109.47327 * 324.99141 * 20 18 16
24 24 C 1.53000 * 109.47193 * 156.55998 * 14 13 12
25 25 N 1.46902 * 109.47391 * 293.48127 * 24 14 13
26 26 C 1.46903 * 109.47197 * 63.27110 * 25 24 14
27 27 C 1.46892 * 109.47267 * 183.27278 * 25 24 14
28 28 C 1.46901 * 109.46801 * 303.27119 * 25 24 14
29 29 H 1.09002 * 109.46792 * 59.99634 * 1 2 3
30 30 H 1.09000 * 109.47254 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.46939 * 300.00269 * 1 2 3
32 32 H 1.09004 * 109.47056 * 179.97438 * 8 7 6
33 33 H 1.08998 * 109.46994 * 299.99644 * 8 7 6
34 34 H 1.09000 * 109.47481 * 59.99895 * 8 7 6
35 35 H 1.07997 * 119.88201 * 180.02562 * 9 6 5
36 36 H 1.08006 * 119.74983 * 180.02562 * 10 9 6
37 37 H 1.07998 * 119.88257 * 180.25971 * 11 10 9
38 38 H 0.96997 * 119.99281 * 179.72406 * 19 18 16
39 39 H 1.09007 * 109.47182 * 53.47995 * 24 14 13
40 40 H 1.08996 * 109.47501 * 173.47626 * 24 14 13
41 41 H 1.08995 * 109.47155 * 50.22479 * 26 25 24
42 42 H 1.08994 * 109.47196 * 170.22869 * 26 25 24
43 43 H 1.09001 * 109.46908 * 290.22510 * 26 25 24
44 44 H 1.09002 * 109.47505 * 59.99595 * 27 25 24
45 45 H 1.09001 * 109.47625 * 180.02562 * 27 25 24
46 46 H 1.09003 * 109.47282 * 299.99506 * 27 25 24
47 47 H 1.09006 * 109.46682 * 60.00169 * 28 25 24
48 48 H 1.08996 * 109.47148 * 179.97438 * 28 25 24
49 49 H 1.08996 * 109.47139 * 300.00074 * 28 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4519 0.0000 0.0000
3 6 2.0640 1.2009 0.0000
4 8 1.4020 2.2203 0.0005
5 6 3.5328 1.2779 0.0006
6 6 4.2392 1.3141 -1.2115
7 8 3.5698 1.2788 -2.3908
8 6 4.3552 1.3197 -3.5840
9 6 5.6223 1.3861 -1.1991
10 6 6.3071 1.4217 0.0017
11 6 5.6214 1.3913 1.2015
12 6 4.2380 1.3140 1.2129
13 8 3.5678 1.2796 2.3916
14 6 4.3492 1.3656 3.5850
15 1 5.1851 2.0464 3.4236
16 6 4.8756 -0.0010 3.9404
17 1 5.9359 -0.1517 4.0799
18 6 4.0037 -1.0588 4.0875
19 7 2.7296 -0.9057 3.7994
20 14 4.6334 -2.7116 4.6884
21 1 4.6677 -2.7182 6.1730
22 1 3.7307 -3.7891 4.2094
23 1 6.0022 -2.9415 4.1606
24 6 3.4781 1.8898 4.7284
25 7 3.0929 3.2804 4.4528
26 6 2.2705 3.3288 3.2365
27 6 2.3224 3.8089 5.5862
28 6 4.3008 4.0939 4.2599
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5139 0.8900
32 1 3.6981 1.2846 -4.4529
33 1 4.9367 2.2414 -3.6047
34 1 5.0300 0.4639 -3.6044
35 1 6.1680 1.4145 -2.1306
36 1 7.3857 1.4782 0.0021
37 1 6.1661 1.4238 2.1335
38 1 2.1170 -1.6511 3.8991
39 1 2.5822 1.2748 4.8139
40 1 4.0390 1.8464 5.6619
41 1 1.4684 2.5945 3.3108
42 1 1.8420 4.3250 3.1271
43 1 2.8908 3.1028 2.3692
44 1 2.9326 3.7729 6.4887
45 1 2.0362 4.8405 5.3816
46 1 1.4262 3.2052 5.7294
47 1 4.8725 3.7017 3.4187
48 1 4.0150 5.1256 4.0549
49 1 4.9110 4.0580 5.1623
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001234598875.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:39:22
Heat of formation + Delta-G solvation = -19.630106 kcal
Electronic energy + Delta-G solvation = -32628.085072 eV
Core-core repulsion = 28447.520144 eV
Total energy + Delta-G solvation = -4180.564928 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.185 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.87773 -41.77125 -40.62534 -39.85325 -37.47752 -37.24569 -35.06753 -32.68976
-31.61311 -30.34279 -29.55773 -29.50319 -28.74687 -28.19760 -27.80107 -25.00966
-24.98309 -23.45948 -22.23320 -21.88067 -19.98179 -19.05905 -18.51243 -18.13962
-18.10175 -17.96617 -17.73568 -17.35258 -17.07782 -16.75492 -16.61307 -16.56508
-15.82886 -15.71622 -15.36640 -14.59175 -14.50360 -14.32242 -14.25802 -13.83998
-13.78202 -13.43781 -13.37224 -13.29396 -13.24381 -13.20316 -13.15923 -12.98159
-12.95642 -12.88517 -12.86293 -12.64885 -12.41796 -12.29821 -11.92151 -11.75817
-11.60964 -11.23121 -11.14019 -10.79876 -9.58634 -8.98124 -8.34583 -6.53443
0.11822 0.49887 0.94868 1.11785 1.34168 1.46585 1.52189 1.87478
1.92890 2.30209 2.64097 2.72949 2.80774 3.01281 3.05994 3.25514
3.74823 3.87250 3.99522 4.05125 4.09303 4.14884 4.18054 4.23204
4.27287 4.27817 4.29019 4.29970 4.36973 4.39649 4.45951 4.46156
4.55202 4.57096 4.62482 4.69566 4.73555 4.75353 4.77877 4.88446
5.04837 5.15822 5.28972 5.36981 5.49421 5.56398 5.61496 5.74743
6.27331 6.39943 6.70206 6.78606 7.29125 8.62719
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.364 6.364
3 C 0.550 3.450
4 O -0.529 6.529
5 C -0.234 4.234
6 C 0.187 3.813
7 O -0.341 6.341
8 C 0.019 3.981
9 C -0.260 4.260
10 C -0.014 4.014
11 C -0.245 4.245
12 C 0.226 3.774
13 O -0.295 6.295
14 C 0.182 3.818
15 H 0.083 0.917
16 C -0.565 4.565
17 H 0.071 0.929
18 C 0.071 3.929
19 N -0.856 5.856
20 Si 0.915 3.085
21 H -0.270 1.270
22 H -0.307 1.307
23 H -0.280 1.280
24 C 0.019 3.981
25 N -0.259 5.259
26 C -0.033 4.033
27 C -0.043 4.043
28 C -0.054 4.054
29 H 0.064 0.936
30 H 0.117 0.883
31 H 0.064 0.936
32 H 0.115 0.885
33 H 0.076 0.924
34 H 0.070 0.930
35 H 0.157 0.843
36 H 0.162 0.838
37 H 0.155 0.845
38 H 0.264 0.736
39 H 0.117 0.883
40 H 0.153 0.847
41 H 0.091 0.909
42 H 0.135 0.865
43 H 0.098 0.902
44 H 0.135 0.865
45 H 0.138 0.862
46 H 0.106 0.894
47 H 0.099 0.901
48 H 0.140 0.860
49 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.936 16.921 4.250 17.554
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.280 6.280
3 C 0.395 3.605
4 O -0.419 6.419
5 C -0.237 4.237
6 C 0.140 3.860
7 O -0.254 6.254
8 C -0.075 4.075
9 C -0.278 4.278
10 C -0.032 4.032
11 C -0.263 4.263
12 C 0.177 3.823
13 O -0.207 6.207
14 C 0.128 3.872
15 H 0.100 0.900
16 C -0.603 4.603
17 H 0.090 0.910
18 C -0.137 4.137
19 N -0.491 5.491
20 Si 0.744 3.256
21 H -0.196 1.196
22 H -0.234 1.234
23 H -0.205 1.205
24 C -0.102 4.102
25 N 0.083 4.917
26 C -0.175 4.175
27 C -0.183 4.183
28 C -0.195 4.195
29 H 0.082 0.918
30 H 0.135 0.865
31 H 0.083 0.917
32 H 0.133 0.867
33 H 0.095 0.905
34 H 0.089 0.911
35 H 0.175 0.825
36 H 0.179 0.821
37 H 0.173 0.827
38 H 0.074 0.926
39 H 0.135 0.865
40 H 0.170 0.830
41 H 0.110 0.890
42 H 0.153 0.847
43 H 0.116 0.884
44 H 0.153 0.847
45 H 0.156 0.844
46 H 0.124 0.876
47 H 0.118 0.882
48 H 0.159 0.841
49 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges 1.075 17.091 4.277 17.651
hybrid contribution 0.048 -2.008 -0.101 2.011
sum 1.122 15.083 4.176 15.691
Atomic orbital electron populations
1.23420 0.75139 1.04985 1.02343 1.86720 1.24757 1.33323 1.83202
1.20825 0.88946 0.81053 0.69711 1.90733 1.67435 1.36502 1.47253
1.17609 0.89372 1.24899 0.91782 1.18700 0.91114 0.92271 0.83929
1.85984 1.38066 1.87657 1.13707 1.23431 0.97516 1.03040 0.83472
1.21264 0.91101 1.14172 1.01298 1.21281 1.01409 0.90097 0.90407
1.21350 0.91926 1.12326 1.00746 1.18484 0.90742 0.88433 0.84689
1.86284 1.37867 1.84435 1.12100 1.20671 0.89850 0.96914 0.79781
0.89958 1.21415 0.94270 0.93672 1.50937 0.91042 1.25190 0.95084
0.99962 0.93493 1.69908 1.03105 1.32712 1.43330 0.86256 0.78132
0.82021 0.79175 1.19579 1.23386 1.20542 1.24147 1.05568 0.78517
1.01960 1.46044 1.15560 1.14995 1.15125 1.24099 0.98424 1.07690
0.87321 1.24232 0.99924 1.04843 0.89331 1.24327 0.87222 0.98961
1.08978 0.91753 0.86514 0.91742 0.86699 0.90542 0.91145 0.82521
0.82094 0.82742 0.92627 0.86526 0.82978 0.89007 0.84711 0.88376
0.84703 0.84373 0.87556 0.88218 0.84135 0.84073
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.32 10.57 113.37 1.20 1.52 16
2 O -0.36 -6.51 10.58 -56.93 -0.60 -7.11 16
3 C 0.55 9.18 6.46 70.14 0.45 9.64 16
4 O -0.53 -9.09 16.90 19.67 0.33 -8.76 16
5 C -0.23 -3.19 5.77 -19.94 -0.12 -3.31 16
6 C 0.19 1.96 6.70 22.84 0.15 2.11 16
7 O -0.34 -3.52 9.95 -89.62 -0.89 -4.41 16
8 C 0.02 0.00 9.81 113.37 1.11 1.11 16
9 C -0.26 -1.05 9.02 22.34 0.20 -0.85 16
10 C -0.01 -0.03 10.02 22.28 0.22 0.20 16
11 C -0.24 -1.13 8.71 22.34 0.19 -0.93 16
12 C 0.23 2.15 6.08 22.85 0.14 2.29 16
13 O -0.29 -2.21 5.15 -89.52 -0.46 -2.67 16
14 C 0.18 0.24 1.39 29.85 0.04 0.28 16
15 H 0.08 -0.44 3.95 -2.39 -0.01 -0.45 16
16 C -0.57 -7.17 8.04 25.60 0.21 -6.96 16
17 H 0.07 1.00 7.82 -2.91 -0.02 0.97 16
18 C 0.07 1.34 5.23 84.65 0.44 1.79 16
19 N -0.86 -17.52 11.23 21.45 0.24 -17.28 16
20 Si 0.91 18.17 29.54 68.60 2.03 20.20 16
21 H -0.27 -5.14 7.11 99.48 0.71 -4.43 16
22 H -0.31 -7.45 7.11 99.48 0.71 -6.74 16
23 H -0.28 -6.02 7.11 99.48 0.71 -5.32 16
24 C 0.02 -0.16 3.59 86.30 0.31 0.15 16
25 N -0.26 5.09 0.05 ******* -0.07 5.02 16
26 C -0.03 0.42 7.10 127.69 0.91 1.33 16
27 C -0.04 1.13 8.00 127.69 1.02 2.15 16
28 C -0.05 1.33 7.57 127.69 0.97 2.29 16
29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16
30 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16
31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16
32 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16
33 H 0.08 -0.28 7.66 -2.39 -0.02 -0.30 16
34 H 0.07 -0.15 7.66 -2.39 -0.02 -0.17 16
35 H 0.16 -0.26 6.28 -2.91 -0.02 -0.28 16
36 H 0.16 -0.77 8.06 -2.91 -0.02 -0.80 16
37 H 0.16 0.20 5.68 -2.91 -0.02 0.19 16
38 H 0.26 6.04 8.31 -92.71 -0.77 5.27 16
39 H 0.12 -0.13 6.76 -2.38 -0.02 -0.15 16
40 H 0.15 -2.03 8.11 -2.39 -0.02 -2.05 16
41 H 0.09 -0.61 7.95 -2.39 -0.02 -0.63 16
42 H 0.13 -2.62 8.00 -2.39 -0.02 -2.64 16
43 H 0.10 -0.53 5.22 -2.39 -0.01 -0.54 16
44 H 0.13 -4.00 8.13 -2.39 -0.02 -4.01 16
45 H 0.14 -4.27 8.07 -2.39 -0.02 -4.29 16
46 H 0.11 -2.49 8.14 -2.39 -0.02 -2.51 16
47 H 0.10 -1.98 5.88 -2.38 -0.01 -1.99 16
48 H 0.14 -4.14 8.14 -2.39 -0.02 -4.16 16
49 H 0.14 -4.05 8.14 -2.39 -0.02 -4.07 16
Total: 0.00 -49.11 389.29 8.98 -40.13
By element:
Atomic # 1 Polarization: -38.88 SS G_CDS: 0.95 Total: -37.93 kcal
Atomic # 6 Polarization: 5.35 SS G_CDS: 7.45 Total: 12.81 kcal
Atomic # 7 Polarization: -12.42 SS G_CDS: 0.17 Total: -12.25 kcal
Atomic # 8 Polarization: -21.33 SS G_CDS: -1.62 Total: -22.95 kcal
Atomic # 14 Polarization: 18.17 SS G_CDS: 2.03 Total: 20.20 kcal
Total: -49.11 8.98 -40.13 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001234598875.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.503 kcal
(2) G-P(sol) polarization free energy of solvation -49.112 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.609 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.979 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.630 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds