Wall clock time and date at job start Tue Mar 31 2020 22:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38111 * 120.39914 * 2 1 4 4 C 1.39626 * 118.33238 * 180.02562 * 3 2 1 5 5 N 1.38545 * 120.53129 * 179.97438 * 4 3 2 6 6 C 1.46957 * 110.99689 * 180.02562 * 5 4 3 7 7 C 1.53052 * 109.37755 * 183.18087 * 6 5 4 8 8 N 1.46964 * 109.36313 * 301.63124 * 7 6 5 9 9 C 1.46907 * 110.99700 * 183.17030 * 8 7 6 10 10 C 1.50698 * 109.46867 * 46.17711 * 9 8 7 11 11 C 1.37630 * 120.12976 * 259.72228 * 10 9 8 12 12 C 1.38617 * 120.25051 * 179.70386 * 11 10 9 13 13 C 1.38658 * 120.49815 * 0.60051 * 12 11 10 14 14 C 1.37599 * 120.24775 * 359.68546 * 13 12 11 15 15 C 1.40703 * 120.12721 * 80.00283 * 10 9 8 16 16 C 1.41392 * 120.24330 * 0.02562 * 15 10 9 17 17 H 1.08006 * 120.00024 * 334.15787 * 16 15 10 18 18 C 1.39945 * 120.00428 * 154.15987 * 16 15 10 19 19 N 1.30831 * 119.99672 * 343.54174 * 18 16 15 20 20 Si 1.86798 * 120.00459 * 163.53935 * 18 16 15 21 21 H 1.48499 * 109.47008 * 59.99699 * 20 18 16 22 22 H 1.48500 * 109.47363 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47240 * 300.00195 * 20 18 16 24 24 C 1.46948 * 110.89697 * 59.29044 * 8 7 6 25 25 C 1.46952 * 111.00099 * 303.80317 * 5 4 3 26 26 N 1.32989 * 118.93879 * 0.25475 * 4 3 2 27 27 C 1.31760 * 120.68465 * 359.48622 * 26 4 3 28 28 N 1.31787 * 121.82666 * 0.52935 * 27 26 4 29 29 H 1.08995 * 109.46925 * 89.99968 * 1 2 3 30 30 H 1.08996 * 109.46831 * 210.00041 * 1 2 3 31 31 H 1.09001 * 109.46928 * 329.99861 * 1 2 3 32 32 H 1.07997 * 120.83631 * 0.04422 * 3 2 1 33 33 H 1.08998 * 109.49312 * 303.15623 * 6 5 4 34 34 H 1.09003 * 109.49129 * 63.20431 * 6 5 4 35 35 H 1.08995 * 109.49144 * 61.57820 * 7 6 5 36 36 H 1.09006 * 109.48924 * 181.64948 * 7 6 5 37 37 H 1.08994 * 109.46707 * 166.17909 * 9 8 7 38 38 H 1.08994 * 109.46679 * 286.18031 * 9 8 7 39 39 H 1.08002 * 119.87468 * 0.02562 * 11 10 9 40 40 H 1.08003 * 119.75050 * 180.30129 * 12 11 10 41 41 H 1.07997 * 119.87630 * 179.69572 * 13 12 11 42 42 H 1.08004 * 120.12625 * 180.02562 * 14 13 12 43 43 H 0.97001 * 119.99555 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.48935 * 180.72388 * 24 8 7 45 45 H 1.08998 * 109.49008 * 60.65882 * 24 8 7 46 46 H 1.09001 * 109.49003 * 296.77717 * 25 5 4 47 47 H 1.09006 * 109.49138 * 56.82132 * 25 5 4 48 48 H 1.08000 * 119.08578 * 180.26333 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2059 1.1912 0.0000 4 6 3.6013 1.1409 -0.0005 5 7 4.3477 2.3081 -0.0011 6 6 5.7873 2.0126 -0.0022 7 6 6.5747 3.3226 0.0773 8 7 6.2141 4.1778 -1.0622 9 6 7.0056 5.4154 -1.0628 10 6 8.4552 5.0846 -0.8172 11 6 8.9984 5.2488 0.4367 12 6 10.3299 4.9395 0.6669 13 6 11.1324 4.4739 -0.3635 14 6 10.6121 4.3077 -1.6264 15 6 9.2600 4.6124 -1.8702 16 6 8.7145 4.4460 -3.1640 17 1 7.6561 4.2684 -3.2851 18 6 9.5460 4.5114 -4.2878 19 7 10.7407 5.0353 -4.1879 20 14 8.9503 3.8505 -5.9303 21 1 7.7280 4.5846 -6.3452 22 1 10.0111 4.0363 -6.9528 23 1 8.6384 2.4046 -5.7984 24 6 4.7746 4.4732 -1.0610 25 6 3.9880 3.1627 -1.1411 26 7 4.2024 -0.0454 -0.0062 27 6 3.4956 -1.1574 -0.0011 28 7 2.1778 -1.1432 -0.0006 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6863 2.1379 0.0007 33 1 6.0312 1.3889 0.8578 34 1 6.0497 1.4857 -0.9197 35 1 6.3330 3.8362 1.0078 36 1 7.6428 3.1073 0.0471 37 1 6.9044 5.9108 -2.0283 38 1 6.6454 6.0772 -0.2752 39 1 8.3836 5.6150 1.2456 40 1 10.7465 5.0668 1.6551 41 1 12.1698 4.2407 -0.1741 42 1 11.2389 3.9445 -2.4275 43 1 11.3171 5.0802 -4.9668 44 1 4.5307 5.0968 -1.9211 45 1 4.5122 4.9997 -0.1435 46 1 4.2303 2.6490 -2.0715 47 1 2.9197 3.3774 -1.1119 48 1 4.0105 -2.1067 -0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235526155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:23 Heat of formation + Delta-G solvation = 87.882131 kcal Electronic energy + Delta-G solvation = -29124.386313 eV Core-core repulsion = 25372.148058 eV Total energy + Delta-G solvation = -3752.238254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.33040 -39.21853 -37.70301 -35.62518 -34.08681 -33.60790 -31.94908 -30.96963 -30.24525 -29.42069 -28.56267 -26.95609 -25.28819 -24.48082 -23.57303 -22.90488 -21.83484 -20.95231 -19.82349 -19.29868 -17.74854 -17.29508 -17.10983 -15.71954 -15.51066 -15.41609 -15.18006 -14.81592 -14.65831 -14.52506 -14.24234 -14.18534 -13.94418 -13.35155 -13.27342 -13.21530 -12.95558 -12.63143 -12.56319 -12.24729 -11.66816 -11.48447 -11.36077 -11.23081 -11.11170 -11.05475 -10.92096 -10.76437 -10.72223 -10.52572 -10.49770 -10.31870 -9.86525 -9.50264 -9.34117 -9.26772 -9.13305 -8.52053 -7.78243 -7.35131 -7.30241 -6.72759 -4.30671 0.86446 1.00263 2.79232 2.94964 3.08482 3.11963 3.27101 3.30418 3.71516 3.94509 3.96116 4.12535 4.41187 4.60412 4.68937 4.88882 4.93440 5.05308 5.16088 5.23624 5.25676 5.39013 5.45511 5.50899 5.62435 5.66335 5.68121 5.73958 5.89313 5.96976 6.02239 6.09877 6.18318 6.24338 6.36063 6.41798 6.47686 6.50973 6.65571 6.85773 6.96325 7.10943 7.13576 7.27453 7.39056 7.56822 7.59876 7.68755 7.93819 8.08264 8.09238 8.15114 8.32912 8.69314 8.95239 9.01848 10.21722 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.003129 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.293162 B = 8946.496394 C = 9895.054021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.185 3.815 3 C -0.248 4.248 4 C 0.366 3.634 5 N -0.475 5.475 6 C 0.070 3.930 7 C 0.061 3.939 8 N -0.526 5.526 9 C 0.128 3.872 10 C -0.204 4.204 11 C -0.084 4.084 12 C -0.246 4.246 13 C -0.105 4.105 14 C -0.164 4.164 15 C 0.130 3.870 16 C -0.446 4.446 17 H 0.091 0.909 18 C 0.074 3.926 19 N -0.796 5.796 20 Si 0.905 3.095 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.265 1.265 24 C 0.055 3.945 25 C 0.067 3.933 26 N -0.558 5.558 27 C 0.324 3.676 28 N -0.550 5.550 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.016 0.984 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.279 0.721 44 H 0.084 0.916 45 H 0.038 0.962 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.754 -5.634 4.833 17.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.041 3.959 3 C -0.273 4.273 4 C 0.126 3.874 5 N -0.192 5.192 6 C -0.057 4.057 7 C -0.068 4.068 8 N -0.251 5.251 9 C 0.002 3.998 10 C -0.206 4.206 11 C -0.103 4.103 12 C -0.266 4.266 13 C -0.124 4.124 14 C -0.183 4.183 15 C 0.127 3.873 16 C -0.475 4.475 17 H 0.109 0.891 18 C -0.143 4.143 19 N -0.422 5.422 20 Si 0.730 3.270 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.189 1.189 24 C -0.074 4.074 25 C -0.059 4.059 26 N -0.279 5.279 27 C 0.034 3.966 28 N -0.268 5.268 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.162 0.838 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.034 0.966 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.056 0.944 46 H 0.077 0.923 47 H 0.101 0.899 48 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -15.047 -6.305 4.648 16.964 hybrid contribution -0.387 0.635 -0.497 0.895 sum -15.434 -5.670 4.151 16.959 Atomic orbital electron populations 1.20754 0.88045 1.03860 1.03526 1.21489 0.97355 0.87914 0.89113 1.22155 0.93930 1.00712 1.10526 1.20214 0.90409 0.88993 0.87804 1.59080 1.08026 1.11571 1.40561 1.22209 0.82617 0.97780 1.03058 1.22209 1.01054 0.91984 0.91514 1.62287 1.02298 1.18070 1.42432 1.20633 0.90795 0.88485 0.99898 1.19400 0.94414 1.12131 0.94626 1.20370 0.94741 1.00091 0.95118 1.20293 0.94852 1.13893 0.97525 1.20683 0.97258 1.00356 0.94078 1.21357 0.96930 1.04864 0.95152 1.17368 0.90925 0.86980 0.92017 1.19716 0.96331 1.41637 0.89840 0.89111 1.25963 0.94358 0.92700 1.01311 1.69832 1.08410 1.31829 1.32081 0.86421 0.79209 0.80645 0.80734 1.19083 1.20610 1.18920 1.22141 0.89325 0.94774 1.01129 1.22359 0.99843 0.93673 0.90047 1.68460 1.41808 0.98534 1.19093 1.24769 0.86556 0.96320 0.88921 1.68267 1.10287 1.30104 1.18109 0.89814 0.90028 0.90276 0.83811 0.89684 0.91803 0.95103 0.88148 0.90339 0.96563 0.90010 0.89827 0.89715 0.86601 0.90994 0.89746 0.94412 0.92309 0.89888 0.78885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.21 36.01 0.37 -0.36 16 2 C 0.18 1.99 6.82 -82.33 -0.56 1.43 16 3 C -0.25 -2.80 8.98 -39.11 -0.35 -3.15 16 4 C 0.37 5.01 6.41 -154.77 -0.99 4.02 16 5 N -0.48 -6.69 4.74 -172.86 -0.82 -7.51 16 6 C 0.07 1.10 4.80 -3.77 -0.02 1.08 16 7 C 0.06 1.05 4.89 -3.76 -0.02 1.03 16 8 N -0.53 -9.23 4.59 -235.91 -1.08 -10.31 16 9 C 0.13 2.48 4.61 -4.97 -0.02 2.45 16 10 C -0.20 -4.58 3.75 -103.91 -0.39 -4.97 16 11 C -0.08 -1.82 8.70 -39.66 -0.35 -2.17 16 12 C -0.25 -5.44 10.05 -39.29 -0.39 -5.83 16 13 C -0.11 -2.45 10.02 -39.66 -0.40 -2.84 16 14 C -0.16 -4.17 8.68 -38.87 -0.34 -4.50 16 15 C 0.13 3.28 5.56 -106.83 -0.59 2.68 16 16 C -0.45 -11.22 8.18 -37.74 -0.31 -11.53 16 17 H 0.09 2.24 6.85 -52.48 -0.36 1.88 16 18 C 0.07 1.81 5.16 -17.34 -0.09 1.72 16 19 N -0.80 -20.22 10.97 55.55 0.61 -19.61 16 20 Si 0.90 18.64 29.59 -169.99 -5.03 13.61 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 23 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 24 C 0.06 0.77 5.58 -3.77 -0.02 0.75 16 25 C 0.07 0.85 5.37 -3.77 -0.02 0.83 16 26 N -0.56 -7.93 8.88 -13.81 -0.12 -8.05 16 27 C 0.32 3.96 12.28 -92.19 -1.13 2.83 16 28 N -0.55 -6.71 10.37 -10.88 -0.11 -6.82 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.14 1.30 7.26 -52.49 -0.38 0.92 16 33 H 0.08 1.33 7.85 -51.93 -0.41 0.92 16 34 H 0.06 1.11 8.06 -51.93 -0.42 0.70 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 2.00 6.23 -51.93 -0.32 1.68 16 37 H 0.08 1.60 7.34 -51.93 -0.38 1.22 16 38 H 0.02 0.30 7.93 -51.93 -0.41 -0.12 16 39 H 0.08 1.60 8.03 -52.49 -0.42 1.18 16 40 H 0.08 1.66 8.06 -52.48 -0.42 1.24 16 41 H 0.08 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.12 3.07 6.21 -52.48 -0.33 2.75 16 43 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.83 6.86 -51.93 -0.36 0.48 16 48 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 382.55 15.07 5.77 5.77 Total: -1.00 -28.07 382.55 -13.57 -41.63 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.15 Total: 7.82 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -5.63 Total: -16.53 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -1.53 Total: -52.30 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.07 -13.57 -41.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235526155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.513 kcal (2) G-P(sol) polarization free energy of solvation -28.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds