Wall clock time and date at job start Tue Mar 31 2020 22:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38111 * 120.39914 * 2 1 4 4 C 1.39626 * 118.33238 * 180.02562 * 3 2 1 5 5 N 1.38545 * 120.53129 * 179.97438 * 4 3 2 6 6 C 1.46957 * 110.99689 * 180.02562 * 5 4 3 7 7 C 1.53052 * 109.37755 * 183.18087 * 6 5 4 8 8 N 1.46964 * 109.36313 * 301.63124 * 7 6 5 9 9 C 1.46907 * 110.99700 * 183.17030 * 8 7 6 10 10 C 1.50698 * 109.46867 * 46.17711 * 9 8 7 11 11 C 1.37630 * 120.12976 * 259.72228 * 10 9 8 12 12 C 1.38617 * 120.25051 * 179.70386 * 11 10 9 13 13 C 1.38658 * 120.49815 * 0.60051 * 12 11 10 14 14 C 1.37599 * 120.24775 * 359.68546 * 13 12 11 15 15 C 1.40703 * 120.12721 * 80.00283 * 10 9 8 16 16 C 1.41392 * 120.24330 * 0.02562 * 15 10 9 17 17 H 1.08006 * 120.00024 * 334.15787 * 16 15 10 18 18 C 1.39945 * 120.00428 * 154.15987 * 16 15 10 19 19 N 1.30831 * 119.99672 * 343.54174 * 18 16 15 20 20 Si 1.86798 * 120.00459 * 163.53935 * 18 16 15 21 21 H 1.48499 * 109.47008 * 59.99699 * 20 18 16 22 22 H 1.48500 * 109.47363 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47240 * 300.00195 * 20 18 16 24 24 C 1.46948 * 110.89697 * 59.29044 * 8 7 6 25 25 C 1.46952 * 111.00099 * 303.80317 * 5 4 3 26 26 N 1.32989 * 118.93879 * 0.25475 * 4 3 2 27 27 C 1.31760 * 120.68465 * 359.48622 * 26 4 3 28 28 N 1.31787 * 121.82666 * 0.52935 * 27 26 4 29 29 H 1.08995 * 109.46925 * 89.99968 * 1 2 3 30 30 H 1.08996 * 109.46831 * 210.00041 * 1 2 3 31 31 H 1.09001 * 109.46928 * 329.99861 * 1 2 3 32 32 H 1.07997 * 120.83631 * 0.04422 * 3 2 1 33 33 H 1.08998 * 109.49312 * 303.15623 * 6 5 4 34 34 H 1.09003 * 109.49129 * 63.20431 * 6 5 4 35 35 H 1.08995 * 109.49144 * 61.57820 * 7 6 5 36 36 H 1.09006 * 109.48924 * 181.64948 * 7 6 5 37 37 H 1.08994 * 109.46707 * 166.17909 * 9 8 7 38 38 H 1.08994 * 109.46679 * 286.18031 * 9 8 7 39 39 H 1.08002 * 119.87468 * 0.02562 * 11 10 9 40 40 H 1.08003 * 119.75050 * 180.30129 * 12 11 10 41 41 H 1.07997 * 119.87630 * 179.69572 * 13 12 11 42 42 H 1.08004 * 120.12625 * 180.02562 * 14 13 12 43 43 H 0.97001 * 119.99555 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.48935 * 180.72388 * 24 8 7 45 45 H 1.08998 * 109.49008 * 60.65882 * 24 8 7 46 46 H 1.09001 * 109.49003 * 296.77717 * 25 5 4 47 47 H 1.09006 * 109.49138 * 56.82132 * 25 5 4 48 48 H 1.08000 * 119.08578 * 180.26333 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2059 1.1912 0.0000 4 6 3.6013 1.1409 -0.0005 5 7 4.3477 2.3081 -0.0011 6 6 5.7873 2.0126 -0.0022 7 6 6.5747 3.3226 0.0773 8 7 6.2141 4.1778 -1.0622 9 6 7.0056 5.4154 -1.0628 10 6 8.4552 5.0846 -0.8172 11 6 8.9984 5.2488 0.4367 12 6 10.3299 4.9395 0.6669 13 6 11.1324 4.4739 -0.3635 14 6 10.6121 4.3077 -1.6264 15 6 9.2600 4.6124 -1.8702 16 6 8.7145 4.4460 -3.1640 17 1 7.6561 4.2684 -3.2851 18 6 9.5460 4.5114 -4.2878 19 7 10.7407 5.0353 -4.1879 20 14 8.9503 3.8505 -5.9303 21 1 7.7280 4.5846 -6.3452 22 1 10.0111 4.0363 -6.9528 23 1 8.6384 2.4046 -5.7984 24 6 4.7746 4.4732 -1.0610 25 6 3.9880 3.1627 -1.1411 26 7 4.2024 -0.0454 -0.0062 27 6 3.4956 -1.1574 -0.0011 28 7 2.1778 -1.1432 -0.0006 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6863 2.1379 0.0007 33 1 6.0312 1.3889 0.8578 34 1 6.0497 1.4857 -0.9197 35 1 6.3330 3.8362 1.0078 36 1 7.6428 3.1073 0.0471 37 1 6.9044 5.9108 -2.0283 38 1 6.6454 6.0772 -0.2752 39 1 8.3836 5.6150 1.2456 40 1 10.7465 5.0668 1.6551 41 1 12.1698 4.2407 -0.1741 42 1 11.2389 3.9445 -2.4275 43 1 11.3171 5.0802 -4.9668 44 1 4.5307 5.0968 -1.9211 45 1 4.5122 4.9997 -0.1435 46 1 4.2303 2.6490 -2.0715 47 1 2.9197 3.3774 -1.1119 48 1 4.0105 -2.1067 -0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235526155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:22 Heat of formation + Delta-G solvation = 73.583043 kcal Electronic energy + Delta-G solvation = -29125.006368 eV Core-core repulsion = 25372.148058 eV Total energy + Delta-G solvation = -3752.858309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.27941 -40.50056 -39.28677 -36.91105 -35.45019 -34.98224 -33.11560 -32.19379 -31.69830 -31.18685 -29.42264 -28.26875 -27.04542 -25.52777 -24.96263 -24.04420 -22.86543 -22.75692 -21.30603 -20.74635 -18.98610 -18.75365 -18.24289 -17.19461 -16.66121 -16.46952 -16.41018 -16.25314 -15.93506 -15.82038 -15.59901 -15.51645 -15.08626 -14.96734 -14.65487 -14.32354 -14.00717 -13.75235 -13.58115 -13.37621 -13.15320 -13.06591 -12.90474 -12.75027 -12.73667 -12.38490 -12.29460 -12.21286 -12.03305 -11.94952 -11.82506 -11.52649 -11.29870 -11.04186 -10.97078 -10.75386 -10.27972 -9.56396 -9.25907 -9.19964 -9.00401 -8.55582 -6.21161 -0.02737 0.09278 1.01705 1.14315 1.39071 1.48477 1.56824 2.23448 2.29610 2.79276 2.81095 3.10439 3.18614 3.21593 3.67369 3.86277 3.90661 3.99467 4.14000 4.14670 4.23270 4.31521 4.36438 4.39487 4.48897 4.55159 4.61699 4.63410 4.73193 4.75510 4.77388 4.84253 4.85823 4.88075 5.00066 5.03458 5.09441 5.17579 5.30213 5.36111 5.41559 5.45263 5.57144 5.81210 5.91223 6.02576 6.17127 6.19026 6.24374 6.30944 6.35631 6.48923 6.81546 7.07896 7.15748 7.17081 8.40672 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.003129 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.293162 B = 8946.496394 C = 9895.054021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.180 3.820 3 C -0.243 4.243 4 C 0.343 3.657 5 N -0.474 5.474 6 C 0.085 3.915 7 C 0.073 3.927 8 N -0.541 5.541 9 C 0.136 3.864 10 C -0.200 4.200 11 C -0.088 4.088 12 C -0.245 4.245 13 C -0.114 4.114 14 C -0.195 4.195 15 C 0.102 3.898 16 C -0.469 4.469 17 H 0.088 0.912 18 C 0.034 3.966 19 N -0.830 5.830 20 Si 0.970 3.030 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.269 1.269 24 C 0.056 3.944 25 C 0.070 3.930 26 N -0.587 5.587 27 C 0.315 3.685 28 N -0.560 5.560 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.171 0.829 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.036 0.964 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.033 0.967 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.283 0.717 44 H 0.097 0.903 45 H 0.049 0.951 46 H 0.041 0.959 47 H 0.119 0.881 48 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.819 -5.372 5.561 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.036 3.964 3 C -0.268 4.268 4 C 0.104 3.896 5 N -0.191 5.191 6 C -0.042 4.042 7 C -0.055 4.055 8 N -0.266 5.266 9 C 0.010 3.990 10 C -0.202 4.202 11 C -0.107 4.107 12 C -0.264 4.264 13 C -0.132 4.132 14 C -0.214 4.214 15 C 0.099 3.901 16 C -0.498 4.498 17 H 0.106 0.894 18 C -0.180 4.180 19 N -0.457 5.457 20 Si 0.792 3.208 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.194 1.194 24 C -0.072 4.072 25 C -0.055 4.055 26 N -0.308 5.308 27 C 0.026 3.974 28 N -0.278 5.278 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.188 0.812 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.115 0.885 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.137 0.863 48 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -18.130 -6.044 5.387 19.856 hybrid contribution 0.508 0.517 -0.588 0.933 sum -17.622 -5.528 4.799 19.082 Atomic orbital electron populations 1.20876 0.85105 1.05103 1.04727 1.22172 0.99208 0.87328 0.87646 1.22412 0.92753 1.02129 1.09474 1.20434 0.91505 0.88654 0.89011 1.59148 1.06563 1.12227 1.41182 1.21883 0.84219 0.96490 1.01598 1.21977 0.99306 0.92645 0.91609 1.62168 1.04406 1.17289 1.42783 1.20477 0.89387 0.89459 0.99692 1.19760 0.95878 1.10233 0.94303 1.20682 0.94999 0.99501 0.95507 1.20658 0.95014 1.12444 0.98304 1.20920 0.98406 1.00221 0.93688 1.21329 0.97415 1.06978 0.95692 1.17696 0.91391 0.87896 0.93128 1.19839 0.96390 1.43057 0.90554 0.89376 1.26691 0.94373 0.92487 1.04409 1.69901 1.09541 1.33069 1.33159 0.85431 0.79032 0.79506 0.76806 1.18161 1.19794 1.19360 1.22241 0.86887 0.95834 1.02226 1.22410 1.01620 0.92508 0.88949 1.68432 1.42922 0.99359 1.20122 1.25220 0.86946 0.96658 0.88620 1.68361 1.10207 1.31003 1.18273 0.88418 0.89824 0.88025 0.81170 0.90018 0.94308 0.94618 0.91463 0.91665 0.94853 0.87330 0.87105 0.88057 0.88742 0.90629 0.88492 0.93266 0.94054 0.86280 0.76863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.21 71.24 0.73 -0.32 16 2 C 0.18 3.42 6.82 42.42 0.29 3.71 16 3 C -0.24 -4.81 8.98 22.57 0.20 -4.61 16 4 C 0.34 8.94 6.41 133.16 0.85 9.79 16 5 N -0.47 -12.71 4.74 -700.80 -3.32 -16.03 16 6 C 0.09 2.72 4.80 86.31 0.41 3.14 16 7 C 0.07 2.52 4.89 86.31 0.42 2.94 16 8 N -0.54 -18.74 4.59 -900.28 -4.13 -22.87 16 9 C 0.14 5.21 4.61 85.56 0.39 5.61 16 10 C -0.20 -9.05 3.75 -19.41 -0.07 -9.13 16 11 C -0.09 -3.73 8.70 22.22 0.19 -3.53 16 12 C -0.24 -10.59 10.05 22.46 0.23 -10.36 16 13 C -0.11 -5.37 10.02 22.22 0.22 -5.15 16 14 C -0.19 -10.33 8.68 22.73 0.20 -10.13 16 15 C 0.10 5.30 5.56 -21.29 -0.12 5.18 16 16 C -0.47 -24.45 8.18 23.46 0.19 -24.26 16 17 H 0.09 4.49 6.85 -2.91 -0.02 4.47 16 18 C 0.03 1.73 5.16 85.26 0.44 2.17 16 19 N -0.83 -43.81 10.97 21.83 0.24 -43.57 16 20 Si 0.97 39.09 29.59 68.60 2.03 41.12 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 22 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 C 0.06 1.46 5.58 86.31 0.48 1.94 16 25 C 0.07 1.66 5.37 86.31 0.46 2.12 16 26 N -0.59 -16.50 8.88 -197.61 -1.75 -18.25 16 27 C 0.31 7.47 12.28 180.90 2.22 9.70 16 28 N -0.56 -12.79 10.37 -188.33 -1.95 -14.74 16 29 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 0.62 8.09 -2.39 -0.02 0.60 16 32 H 0.17 2.34 7.26 -2.91 -0.02 2.32 16 33 H 0.08 2.61 7.85 -2.39 -0.02 2.60 16 34 H 0.04 1.41 8.06 -2.39 -0.02 1.39 16 35 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 2.76 6.23 -2.38 -0.01 2.74 16 37 H 0.07 2.67 7.34 -2.39 -0.02 2.65 16 38 H 0.03 1.15 7.93 -2.39 -0.02 1.13 16 39 H 0.11 3.98 8.03 -2.91 -0.02 3.96 16 40 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 41 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 42 H 0.09 5.32 6.21 -2.91 -0.02 5.31 16 43 H 0.28 13.74 8.30 -92.71 -0.77 12.97 16 44 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.12 1.94 6.86 -2.38 -0.02 1.93 16 48 H 0.22 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -63.09 382.55 -0.18 -63.27 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.96 Total: 32.28 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 7.75 Total: -21.20 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -10.92 Total: -115.47 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -63.09 -0.18 -63.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235526155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.852 kcal (2) G-P(sol) polarization free energy of solvation -63.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds