Wall clock time and date at job start Tue Mar 31 2020 22:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36234 * 120.05721 * 2 1 4 4 C 1.39967 * 120.11758 * 179.97438 * 3 2 1 5 5 C 1.47894 * 119.88618 * 180.02562 * 4 3 2 6 6 C 1.40037 * 120.86907 * 359.71328 * 5 4 3 7 7 N 1.32033 * 119.01297 * 179.76426 * 6 5 4 8 8 C 1.32608 * 120.89538 * 0.53012 * 7 6 5 9 9 N 1.38214 * 119.03945 * 179.70265 * 8 7 6 10 10 C 1.46955 * 110.99729 * 123.82331 * 9 8 7 11 11 C 1.53049 * 109.36357 * 176.80986 * 10 9 8 12 12 N 1.46963 * 109.36264 * 58.40062 * 11 10 9 13 13 C 1.46899 * 110.99843 * 176.81395 * 12 11 10 14 14 C 1.46951 * 110.87869 * 300.67818 * 12 11 10 15 15 C 1.46953 * 111.00066 * 0.02562 * 9 8 7 16 16 N 1.32598 * 121.91613 * 359.72211 * 8 7 6 17 17 C 1.32039 * 120.90137 * 0.02562 * 16 8 7 18 18 C 1.40015 * 120.22661 * 0.02562 * 4 3 2 19 19 C 1.36202 * 120.11796 * 359.97438 * 18 4 3 20 20 C 1.40932 * 120.05921 * 179.97438 * 2 1 3 21 21 C 1.40999 * 120.11298 * 359.74714 * 20 2 1 22 22 H 1.08004 * 120.00104 * 329.62943 * 21 20 2 23 23 C 1.39978 * 119.99718 * 149.62097 * 21 20 2 24 24 N 1.30824 * 119.99647 * 162.25762 * 23 21 20 25 25 Si 1.86799 * 120.00305 * 342.26476 * 23 21 20 26 26 H 1.48495 * 109.46941 * 95.38543 * 25 23 21 27 27 H 1.48498 * 109.47080 * 215.38677 * 25 23 21 28 28 H 1.48503 * 109.47030 * 335.38490 * 25 23 21 29 29 H 1.08997 * 109.47237 * 270.02198 * 1 2 3 30 30 H 1.08993 * 109.47171 * 30.02606 * 1 2 3 31 31 H 1.09002 * 109.47055 * 150.02638 * 1 2 3 32 32 H 1.08001 * 119.93998 * 359.97382 * 3 2 1 33 33 H 1.08003 * 120.49451 * 0.02562 * 6 5 4 34 34 H 1.09009 * 109.48967 * 296.77416 * 10 9 8 35 35 H 1.08991 * 109.49608 * 56.84036 * 10 9 8 36 36 H 1.08996 * 109.49251 * 298.43238 * 11 10 9 37 37 H 1.09006 * 109.49167 * 178.36164 * 11 10 9 38 38 H 1.08994 * 109.47231 * 183.79653 * 13 12 11 39 39 H 1.09006 * 109.47351 * 303.79675 * 13 12 11 40 40 H 1.09001 * 109.47114 * 63.79517 * 13 12 11 41 41 H 1.09009 * 109.49153 * 299.35691 * 14 12 11 42 42 H 1.09000 * 109.50655 * 179.30150 * 14 12 11 43 43 H 1.09000 * 109.49001 * 303.15545 * 15 9 8 44 44 H 1.08993 * 109.49440 * 63.19730 * 15 9 8 45 45 H 1.07993 * 120.49546 * 179.97438 * 17 16 8 46 46 H 1.07999 * 119.94072 * 180.02562 * 18 4 3 47 47 H 1.08002 * 120.05474 * 180.02562 * 19 18 4 48 48 H 0.96997 * 119.99936 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1791 0.0000 4 6 3.5891 1.1806 0.0005 5 6 4.3246 2.4637 0.0011 6 6 3.6392 3.6848 -0.0049 7 7 4.3326 4.8084 0.0006 8 6 5.6586 4.7902 0.0011 9 7 6.3460 5.9893 0.0006 10 6 7.2700 6.0670 1.1407 11 6 8.0671 7.3710 1.0599 12 7 7.1387 8.5103 1.0595 13 6 7.8694 9.7847 1.0590 14 6 6.2148 8.4326 -0.0806 15 6 5.4177 7.1285 0.0003 16 7 6.3441 3.6552 0.0016 17 6 5.7249 2.4890 0.0012 18 6 4.2952 -0.0284 0.0005 19 6 3.6225 -1.2128 0.0005 20 6 2.2130 -1.2198 0.0005 21 6 1.5117 -2.4430 0.0065 22 1 0.5448 -2.5088 0.4832 23 6 2.0685 -3.5719 -0.6057 24 7 1.6137 -4.7640 -0.3166 25 14 3.4610 -3.3764 -1.8354 26 1 4.7620 -3.5582 -1.1429 27 1 3.3231 -4.3965 -2.9057 28 1 3.4049 -2.0190 -2.4351 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6493 2.1144 -0.0004 33 1 2.5594 3.7072 -0.0096 34 1 6.7023 6.0448 2.0711 35 1 7.9550 5.2197 1.1121 36 1 8.6557 7.3813 0.1427 37 1 8.7324 7.4445 1.9203 38 1 7.1606 10.6099 1.1267 39 1 8.5460 9.8160 1.9130 40 1 8.4438 9.8738 0.1369 41 1 6.7824 8.4547 -1.0110 42 1 5.5297 9.2799 -0.0523 43 1 4.7523 7.0551 -0.8600 44 1 4.8288 7.1182 0.9173 45 1 6.2897 1.5686 0.0012 46 1 5.3752 -0.0219 0.0014 47 1 4.1683 -2.1448 0.0010 48 1 1.9998 -5.5463 -0.7405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235923766.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:10 Heat of formation + Delta-G solvation = 87.948340 kcal Electronic energy + Delta-G solvation = -28158.061255 eV Core-core repulsion = 24405.825871 eV Total energy + Delta-G solvation = -3752.235383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.97714 -39.21829 -38.19924 -35.75497 -34.06972 -33.51313 -32.55005 -31.38865 -31.13237 -29.72076 -28.06824 -26.63997 -25.11826 -24.68597 -23.93202 -23.19873 -22.49549 -21.20357 -20.19954 -19.54331 -18.01111 -17.60678 -17.00144 -16.09409 -15.58733 -15.35151 -15.21231 -15.15158 -14.91921 -14.51284 -14.41844 -14.10804 -13.68317 -13.51507 -13.36231 -13.03371 -12.78723 -12.73908 -12.66900 -12.45837 -12.11617 -11.98340 -11.70444 -11.52678 -11.33136 -11.22077 -11.16804 -11.15289 -11.02817 -10.72582 -10.50278 -10.48253 -9.95940 -9.86772 -9.74256 -9.33173 -8.83434 -8.68648 -8.45937 -7.83924 -7.25683 -7.22246 -4.66528 1.03649 1.45219 2.49575 2.58434 2.96757 3.08246 3.16838 3.29113 3.62487 3.78391 4.01497 4.38324 4.42807 4.61068 4.74142 4.87374 4.93671 5.00104 5.10582 5.14687 5.19081 5.25091 5.27240 5.34172 5.39588 5.45949 5.53451 5.55823 5.73729 5.75469 5.83288 5.91913 5.93012 6.07615 6.12368 6.31077 6.46896 6.48899 6.54959 6.62140 6.68284 6.72204 6.77241 6.79401 6.91518 7.01677 7.26910 7.37558 7.53780 7.58596 7.68326 7.88649 8.07550 8.41113 8.45688 8.52009 9.75742 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.002207 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.434248 B =12682.524970 C =13336.519885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.180 4.180 3 C -0.054 4.054 4 C -0.195 4.195 5 C -0.098 4.098 6 C 0.137 3.863 7 N -0.538 5.538 8 C 0.439 3.561 9 N -0.462 5.462 10 C 0.069 3.931 11 C 0.057 3.943 12 N -0.547 5.547 13 C 0.026 3.974 14 C 0.054 3.946 15 C 0.075 3.925 16 N -0.517 5.517 17 C 0.137 3.863 18 C -0.052 4.052 19 C -0.237 4.237 20 C 0.099 3.901 21 C -0.418 4.418 22 H 0.098 0.902 23 C 0.080 3.920 24 N -0.788 5.788 25 Si 0.914 3.086 26 H -0.267 1.267 27 H -0.288 1.288 28 H -0.241 1.241 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.164 0.836 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.026 0.974 41 H 0.043 0.957 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.165 0.835 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.237 18.200 0.685 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.182 4.182 3 C -0.072 4.072 4 C -0.197 4.197 5 C -0.104 4.104 6 C -0.030 4.030 7 N -0.256 5.256 8 C 0.084 3.916 9 N -0.183 5.183 10 C -0.058 4.058 11 C -0.071 4.071 12 N -0.272 5.272 13 C -0.122 4.122 14 C -0.074 4.074 15 C -0.053 4.053 16 N -0.234 5.234 17 C -0.031 4.031 18 C -0.070 4.070 19 C -0.256 4.256 20 C 0.096 3.904 21 C -0.445 4.445 22 H 0.116 0.884 23 C -0.142 4.142 24 N -0.410 5.410 25 Si 0.739 3.261 26 H -0.193 1.193 27 H -0.215 1.215 28 H -0.164 1.164 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.181 0.819 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.077 0.923 45 H 0.182 0.818 46 H 0.115 0.885 47 H 0.121 0.879 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.717 18.835 0.693 20.766 hybrid contribution 0.211 -1.063 -0.675 1.277 sum 8.928 17.772 0.018 19.888 Atomic orbital electron populations 1.20472 0.92693 1.01172 1.00373 1.19426 0.94918 0.92480 1.11331 1.20291 0.92569 0.96449 0.97922 1.17676 0.92446 0.89510 1.20116 1.20526 0.94835 0.95441 0.99559 1.23056 1.00169 0.86291 0.93526 1.68110 1.07797 1.32273 1.17381 1.20647 0.85509 0.89533 0.95887 1.58628 1.18423 0.99594 1.41613 1.22224 0.95044 0.98302 0.90191 1.22208 0.94025 0.89398 1.01481 1.62187 1.19375 1.02575 1.43099 1.22341 0.98007 0.91329 1.00560 1.22276 0.95576 0.97736 0.91814 1.22025 0.93115 0.86826 1.03319 1.67757 1.41209 0.97948 1.16466 1.23107 0.91467 0.94916 0.93613 1.20386 0.97489 0.92156 0.97010 1.20698 0.94559 0.96488 1.13841 1.17703 0.91341 0.92793 0.88591 1.19662 1.05285 0.91174 1.28380 0.88372 1.26341 0.97026 0.94188 0.96619 1.69678 1.37589 0.99450 1.34284 0.86248 0.79994 0.80193 0.79623 1.19278 1.21526 1.16374 0.93402 0.93846 0.91544 0.88393 0.81900 0.93315 0.88521 0.93623 0.89747 0.91269 0.91324 0.95552 0.93909 0.89744 0.89126 0.92280 0.81770 0.88472 0.87885 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.40 36.01 0.34 -1.32 16 2 C -0.18 -3.79 5.90 -104.32 -0.62 -4.41 16 3 C -0.05 -1.04 9.02 -39.66 -0.36 -1.40 16 4 C -0.19 -3.76 5.90 -104.63 -0.62 -4.38 16 5 C -0.10 -1.73 5.91 -104.59 -0.62 -2.34 16 6 C 0.14 2.26 10.70 -16.79 -0.18 2.08 16 7 N -0.54 -8.94 8.65 -13.62 -0.12 -9.06 16 8 C 0.44 7.28 7.17 -322.80 -2.31 4.97 16 9 N -0.46 -6.53 4.77 -175.24 -0.84 -7.37 16 10 C 0.07 0.85 5.45 -3.77 -0.02 0.83 16 11 C 0.06 0.55 5.62 -3.76 -0.02 0.53 16 12 N -0.55 -5.30 4.97 -242.75 -1.21 -6.50 16 13 C 0.03 0.18 9.60 60.06 0.58 0.76 16 14 C 0.05 0.53 5.62 -3.77 -0.02 0.51 16 15 C 0.07 0.92 4.76 -3.77 -0.02 0.90 16 16 N -0.52 -8.83 9.68 -13.61 -0.13 -8.96 16 17 C 0.14 2.30 10.70 -16.78 -0.18 2.12 16 18 C -0.05 -1.04 9.38 -39.65 -0.37 -1.41 16 19 C -0.24 -5.24 7.10 -39.28 -0.28 -5.52 16 20 C 0.10 2.29 5.09 -106.80 -0.54 1.75 16 21 C -0.42 -10.21 8.50 -37.88 -0.32 -10.53 16 22 H 0.10 2.49 7.23 -52.48 -0.38 2.11 16 23 C 0.08 1.92 5.40 -17.33 -0.09 1.83 16 24 N -0.79 -19.23 13.93 55.55 0.77 -18.45 16 25 Si 0.91 19.25 24.52 -169.99 -4.17 15.09 16 26 H -0.27 -5.46 6.71 56.52 0.38 -5.08 16 27 H -0.29 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.24 -5.25 6.86 56.52 0.39 -4.86 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.07 1.27 6.86 -51.93 -0.36 0.91 16 32 H 0.10 1.62 6.26 -52.49 -0.33 1.29 16 33 H 0.16 2.35 6.31 -52.48 -0.33 2.02 16 34 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 35 H 0.10 1.21 7.63 -51.93 -0.40 0.81 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 40 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.15 7.79 -51.93 -0.40 0.74 16 44 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 45 H 0.17 2.43 6.31 -52.49 -0.33 2.10 16 46 H 0.10 1.67 6.26 -52.49 -0.33 1.34 16 47 H 0.10 2.26 4.77 -52.49 -0.25 2.01 16 48 H 0.29 6.40 8.30 -40.82 -0.34 6.06 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -26.46 375.48 -12.60 -39.06 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.92 Total: 5.58 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -5.66 Total: -15.04 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -1.52 Total: -50.34 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.17 Total: 15.09 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -26.46 -12.60 -39.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235923766.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.005 kcal (2) G-P(sol) polarization free energy of solvation -26.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds