Wall clock time and date at job start Tue Mar 31 2020 22:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36234 * 120.05721 * 2 1 4 4 C 1.39967 * 120.11758 * 179.97438 * 3 2 1 5 5 C 1.47894 * 119.88618 * 180.02562 * 4 3 2 6 6 C 1.40037 * 120.86907 * 359.71328 * 5 4 3 7 7 N 1.32033 * 119.01297 * 179.76426 * 6 5 4 8 8 C 1.32608 * 120.89538 * 0.53012 * 7 6 5 9 9 N 1.38214 * 119.03945 * 179.70265 * 8 7 6 10 10 C 1.46955 * 110.99729 * 123.82331 * 9 8 7 11 11 C 1.53049 * 109.36357 * 176.80986 * 10 9 8 12 12 N 1.46963 * 109.36264 * 58.40062 * 11 10 9 13 13 C 1.46899 * 110.99843 * 176.81395 * 12 11 10 14 14 C 1.46951 * 110.87869 * 300.67818 * 12 11 10 15 15 C 1.46953 * 111.00066 * 0.02562 * 9 8 7 16 16 N 1.32598 * 121.91613 * 359.72211 * 8 7 6 17 17 C 1.32039 * 120.90137 * 0.02562 * 16 8 7 18 18 C 1.40015 * 120.22661 * 0.02562 * 4 3 2 19 19 C 1.36202 * 120.11796 * 359.97438 * 18 4 3 20 20 C 1.40932 * 120.05921 * 179.97438 * 2 1 3 21 21 C 1.40999 * 120.11298 * 359.74714 * 20 2 1 22 22 H 1.08004 * 120.00104 * 329.62943 * 21 20 2 23 23 C 1.39978 * 119.99718 * 149.62097 * 21 20 2 24 24 N 1.30824 * 119.99647 * 162.25762 * 23 21 20 25 25 Si 1.86799 * 120.00305 * 342.26476 * 23 21 20 26 26 H 1.48495 * 109.46941 * 95.38543 * 25 23 21 27 27 H 1.48498 * 109.47080 * 215.38677 * 25 23 21 28 28 H 1.48503 * 109.47030 * 335.38490 * 25 23 21 29 29 H 1.08997 * 109.47237 * 270.02198 * 1 2 3 30 30 H 1.08993 * 109.47171 * 30.02606 * 1 2 3 31 31 H 1.09002 * 109.47055 * 150.02638 * 1 2 3 32 32 H 1.08001 * 119.93998 * 359.97382 * 3 2 1 33 33 H 1.08003 * 120.49451 * 0.02562 * 6 5 4 34 34 H 1.09009 * 109.48967 * 296.77416 * 10 9 8 35 35 H 1.08991 * 109.49608 * 56.84036 * 10 9 8 36 36 H 1.08996 * 109.49251 * 298.43238 * 11 10 9 37 37 H 1.09006 * 109.49167 * 178.36164 * 11 10 9 38 38 H 1.08994 * 109.47231 * 183.79653 * 13 12 11 39 39 H 1.09006 * 109.47351 * 303.79675 * 13 12 11 40 40 H 1.09001 * 109.47114 * 63.79517 * 13 12 11 41 41 H 1.09009 * 109.49153 * 299.35691 * 14 12 11 42 42 H 1.09000 * 109.50655 * 179.30150 * 14 12 11 43 43 H 1.09000 * 109.49001 * 303.15545 * 15 9 8 44 44 H 1.08993 * 109.49440 * 63.19730 * 15 9 8 45 45 H 1.07993 * 120.49546 * 179.97438 * 17 16 8 46 46 H 1.07999 * 119.94072 * 180.02562 * 18 4 3 47 47 H 1.08002 * 120.05474 * 180.02562 * 19 18 4 48 48 H 0.96997 * 119.99936 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1791 0.0000 4 6 3.5891 1.1806 0.0005 5 6 4.3246 2.4637 0.0011 6 6 3.6392 3.6848 -0.0049 7 7 4.3326 4.8084 0.0006 8 6 5.6586 4.7902 0.0011 9 7 6.3460 5.9893 0.0006 10 6 7.2700 6.0670 1.1407 11 6 8.0671 7.3710 1.0599 12 7 7.1387 8.5103 1.0595 13 6 7.8694 9.7847 1.0590 14 6 6.2148 8.4326 -0.0806 15 6 5.4177 7.1285 0.0003 16 7 6.3441 3.6552 0.0016 17 6 5.7249 2.4890 0.0012 18 6 4.2952 -0.0284 0.0005 19 6 3.6225 -1.2128 0.0005 20 6 2.2130 -1.2198 0.0005 21 6 1.5117 -2.4430 0.0065 22 1 0.5448 -2.5088 0.4832 23 6 2.0685 -3.5719 -0.6057 24 7 1.6137 -4.7640 -0.3166 25 14 3.4610 -3.3764 -1.8354 26 1 4.7620 -3.5582 -1.1429 27 1 3.3231 -4.3965 -2.9057 28 1 3.4049 -2.0190 -2.4351 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6493 2.1144 -0.0004 33 1 2.5594 3.7072 -0.0096 34 1 6.7023 6.0448 2.0711 35 1 7.9550 5.2197 1.1121 36 1 8.6557 7.3813 0.1427 37 1 8.7324 7.4445 1.9203 38 1 7.1606 10.6099 1.1267 39 1 8.5460 9.8160 1.9130 40 1 8.4438 9.8738 0.1369 41 1 6.7824 8.4547 -1.0110 42 1 5.5297 9.2799 -0.0523 43 1 4.7523 7.0551 -0.8600 44 1 4.8288 7.1182 0.9173 45 1 6.2897 1.5686 0.0012 46 1 5.3752 -0.0219 0.0014 47 1 4.1683 -2.1448 0.0010 48 1 1.9998 -5.5463 -0.7405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235923766.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:09 Heat of formation + Delta-G solvation = 74.120651 kcal Electronic energy + Delta-G solvation = -28158.660868 eV Core-core repulsion = 24405.825871 eV Total energy + Delta-G solvation = -3752.834997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.24294 -40.33324 -39.64889 -36.78693 -35.67033 -34.83391 -34.05155 -32.91976 -32.04276 -31.04921 -29.15481 -28.12236 -26.47126 -25.87319 -25.01734 -24.28044 -23.77640 -22.73705 -21.31993 -20.87421 -19.44981 -18.99225 -18.35136 -17.57425 -16.76439 -16.59215 -16.32098 -16.09301 -15.89905 -15.82642 -15.61338 -15.42062 -14.95632 -14.77423 -14.68834 -14.60647 -14.33657 -14.20908 -13.62169 -13.49398 -13.30260 -13.15120 -12.84721 -12.76802 -12.69730 -12.68848 -12.39394 -12.20358 -12.10563 -12.03250 -11.98914 -11.80328 -11.57125 -11.41467 -11.22778 -10.92184 -10.18364 -9.83647 -9.41992 -9.36827 -8.96173 -8.77519 -6.43774 -0.34875 0.14093 0.89248 0.95644 1.27469 1.42092 1.48869 2.09155 2.13376 2.50431 2.88679 2.93261 3.16408 3.51915 3.62609 3.67273 3.84198 3.94181 4.00748 4.01465 4.10998 4.18402 4.28698 4.32559 4.43673 4.51418 4.59502 4.62727 4.64088 4.74890 4.78889 4.81886 4.82599 4.88152 4.94534 5.00681 5.04031 5.05298 5.10345 5.24768 5.27520 5.29421 5.56486 5.65599 5.72282 5.79084 5.93380 5.98800 5.99872 6.03500 6.21752 6.25051 6.36803 6.71242 6.81104 7.14406 8.09956 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.002207 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.434248 B =12682.524970 C =13336.519885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.191 4.191 3 C -0.060 4.060 4 C -0.171 4.171 5 C -0.123 4.123 6 C 0.150 3.850 7 N -0.547 5.547 8 C 0.445 3.555 9 N -0.467 5.467 10 C 0.072 3.928 11 C 0.063 3.937 12 N -0.560 5.560 13 C 0.027 3.973 14 C 0.061 3.939 15 C 0.077 3.923 16 N -0.533 5.533 17 C 0.147 3.853 18 C -0.064 4.064 19 C -0.250 4.250 20 C 0.079 3.921 21 C -0.457 4.457 22 H 0.069 0.931 23 C 0.049 3.951 24 N -0.835 5.835 25 Si 0.960 3.040 26 H -0.258 1.258 27 H -0.280 1.280 28 H -0.253 1.253 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.131 0.869 33 H 0.186 0.814 34 H 0.039 0.961 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.030 0.970 41 H 0.042 0.958 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.048 0.952 45 H 0.183 0.817 46 H 0.126 0.874 47 H 0.099 0.901 48 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.261 22.323 0.502 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.192 4.192 3 C -0.078 4.078 4 C -0.173 4.173 5 C -0.129 4.129 6 C -0.017 4.017 7 N -0.265 5.265 8 C 0.089 3.911 9 N -0.188 5.188 10 C -0.055 4.055 11 C -0.065 4.065 12 N -0.285 5.285 13 C -0.121 4.121 14 C -0.068 4.068 15 C -0.050 4.050 16 N -0.249 5.249 17 C -0.020 4.020 18 C -0.082 4.082 19 C -0.269 4.269 20 C 0.076 3.924 21 C -0.486 4.486 22 H 0.087 0.913 23 C -0.168 4.168 24 N -0.460 5.460 25 Si 0.784 3.216 26 H -0.183 1.183 27 H -0.207 1.207 28 H -0.176 1.176 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.149 0.851 33 H 0.202 0.798 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.063 0.937 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.121 0.879 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.200 0.800 46 H 0.144 0.856 47 H 0.117 0.883 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.756 22.988 0.519 25.385 hybrid contribution -0.234 -1.782 -0.556 1.882 sum 10.522 21.206 -0.038 23.673 Atomic orbital electron populations 1.20461 0.91275 1.01687 1.00941 1.19810 0.96352 0.92453 1.10632 1.20627 0.92844 0.97139 0.97223 1.17962 0.92724 0.90128 1.16508 1.20433 0.95201 0.94926 1.02316 1.23445 1.01248 0.85844 0.91154 1.68252 1.07842 1.32148 1.18307 1.21149 0.85821 0.90346 0.93738 1.58709 1.18722 0.99292 1.42104 1.22258 0.94543 0.99779 0.88882 1.22180 0.93737 0.88221 1.02349 1.62205 1.19799 1.03525 1.42955 1.22395 0.98280 0.90209 1.01209 1.22237 0.95773 0.96828 0.91929 1.22058 0.93125 0.87337 1.02466 1.67875 1.41273 0.98170 1.17629 1.23449 0.91449 0.95602 0.91528 1.20697 0.99119 0.91593 0.96756 1.20806 0.94326 0.97328 1.14420 1.17916 0.92104 0.93145 0.89255 1.19528 1.04991 0.92678 1.31354 0.91280 1.26860 0.98604 0.93844 0.97474 1.69708 1.39840 1.00006 1.36449 0.85547 0.78470 0.79369 0.78208 1.18278 1.20676 1.17635 0.92771 0.90946 0.93324 0.85144 0.79769 0.94231 0.89003 0.93712 0.87786 0.90296 0.90310 0.95177 0.94006 0.87855 0.89678 0.93324 0.80019 0.85649 0.88347 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.17 9.40 71.24 0.67 -2.50 16 2 C -0.19 -7.97 5.90 -19.67 -0.12 -8.08 16 3 C -0.06 -2.19 9.02 22.22 0.20 -1.99 16 4 C -0.17 -6.16 5.90 -19.87 -0.12 -6.27 16 5 C -0.12 -3.94 5.91 -19.84 -0.12 -4.05 16 6 C 0.15 4.44 10.70 85.10 0.91 5.35 16 7 N -0.55 -16.62 8.65 -196.99 -1.70 -18.32 16 8 C 0.44 13.61 7.17 261.49 1.87 15.48 16 9 N -0.47 -12.13 4.77 -708.35 -3.38 -15.51 16 10 C 0.07 1.59 5.45 86.31 0.47 2.06 16 11 C 0.06 1.05 5.62 86.31 0.49 1.53 16 12 N -0.56 -9.07 4.97 -921.93 -4.58 -13.65 16 13 C 0.03 0.29 9.60 127.69 1.23 1.51 16 14 C 0.06 1.01 5.62 86.31 0.49 1.49 16 15 C 0.08 1.72 4.76 86.31 0.41 2.13 16 16 N -0.53 -16.75 9.68 -196.99 -1.91 -18.66 16 17 C 0.15 4.49 10.70 85.10 0.91 5.40 16 18 C -0.06 -2.42 9.38 22.23 0.21 -2.22 16 19 C -0.25 -11.04 7.10 22.46 0.16 -10.88 16 20 C 0.08 3.72 5.09 -21.28 -0.11 3.62 16 21 C -0.46 -23.71 8.50 23.37 0.20 -23.52 16 22 H 0.07 3.82 7.23 -2.91 -0.02 3.80 16 23 C 0.05 2.46 5.40 85.26 0.46 2.92 16 24 N -0.84 -43.28 13.93 21.83 0.30 -42.98 16 25 Si 0.96 40.75 24.52 68.60 1.68 42.43 16 26 H -0.26 -10.34 6.71 99.48 0.67 -9.68 16 27 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 28 H -0.25 -11.02 6.86 99.48 0.68 -10.34 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 31 H 0.05 1.93 6.86 -2.39 -0.02 1.92 16 32 H 0.13 3.81 6.26 -2.91 -0.02 3.79 16 33 H 0.19 4.55 6.31 -2.91 -0.02 4.53 16 34 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.09 2.11 7.63 -2.39 -0.02 2.09 16 36 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.10 1.32 8.13 -2.38 -0.02 1.30 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 0.71 8.13 -2.38 -0.02 0.69 16 40 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 1.96 7.79 -2.39 -0.02 1.94 16 44 H 0.05 1.19 8.03 -2.39 -0.02 1.17 16 45 H 0.18 4.78 6.31 -2.91 -0.02 4.76 16 46 H 0.13 3.97 6.26 -2.91 -0.02 3.95 16 47 H 0.10 4.37 4.77 -2.91 -0.01 4.35 16 48 H 0.30 13.80 8.30 -92.71 -0.77 13.03 16 Total: -1.00 -58.85 375.48 -0.46 -59.31 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.91 Total: 25.38 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 8.21 Total: -18.01 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -11.26 Total: -109.11 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 1.68 Total: 42.43 kcal Total: -58.85 -0.46 -59.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235923766.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.428 kcal (2) G-P(sol) polarization free energy of solvation -58.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds