Wall clock time and date at job start Tue Mar 31 2020 22:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38881 * 119.23870 * 2 1 4 4 C 1.36881 * 119.81475 * 180.23862 * 3 2 1 5 5 C 1.41116 * 118.40299 * 359.47838 * 4 3 2 6 6 C 1.40841 * 120.72317 * 180.29386 * 5 4 3 7 7 H 1.08007 * 119.99771 * 152.92329 * 6 5 4 8 8 C 1.40028 * 120.00338 * 332.92609 * 6 5 4 9 9 N 1.30803 * 119.99620 * 345.41096 * 8 6 5 10 10 Si 1.86801 * 120.00192 * 165.40756 * 8 6 5 11 11 H 1.48498 * 109.46913 * 60.00241 * 10 8 6 12 12 H 1.48498 * 109.47229 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47095 * 300.00250 * 10 8 6 14 14 C 1.41939 * 118.55398 * 0.27399 * 5 4 3 15 15 C 1.47657 * 120.00068 * 179.97438 * 14 5 4 16 16 C 1.40352 * 120.48100 * 136.39700 * 15 14 5 17 17 C 1.36885 * 118.49003 * 180.02562 * 16 15 14 18 18 C 1.39390 * 119.38831 * 359.97438 * 17 16 15 19 19 N 1.38649 * 119.53234 * 180.02562 * 18 17 16 20 20 C 1.46951 * 110.99821 * 303.79679 * 19 18 17 21 21 C 1.53054 * 109.36647 * 176.81069 * 20 19 18 22 22 N 1.46958 * 109.36106 * 58.40371 * 21 20 19 23 23 C 1.46900 * 111.00069 * 176.81258 * 22 21 20 24 24 C 1.46962 * 110.88197 * 300.68115 * 22 21 20 25 25 C 1.46958 * 110.99951 * 180.02562 * 19 18 17 26 26 N 1.32566 * 120.93614 * 359.97438 * 18 17 16 27 27 C 1.31720 * 121.64101 * 359.74796 * 26 18 17 28 28 N 1.31725 * 119.24687 * 179.70839 * 2 1 3 29 29 H 1.09004 * 109.47285 * 270.29130 * 1 2 3 30 30 H 1.08997 * 109.47551 * 30.29213 * 1 2 3 31 31 H 1.09000 * 109.47040 * 150.29660 * 1 2 3 32 32 H 1.08004 * 120.09889 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.79897 * 179.75069 * 4 3 2 34 34 H 0.97007 * 119.99248 * 179.97438 * 9 8 6 35 35 H 1.07998 * 120.75749 * 0.02562 * 16 15 14 36 36 H 1.07997 * 120.30837 * 179.97438 * 17 16 15 37 37 H 1.09003 * 109.49509 * 296.77742 * 20 19 18 38 38 H 1.09000 * 109.48897 * 56.84842 * 20 19 18 39 39 H 1.08999 * 109.48838 * 298.44093 * 21 20 19 40 40 H 1.08997 * 109.50752 * 178.38185 * 21 20 19 41 41 H 1.08997 * 109.47264 * 183.79873 * 23 22 21 42 42 H 1.08994 * 109.46984 * 303.80351 * 23 22 21 43 43 H 1.08999 * 109.47011 * 63.80009 * 23 22 21 44 44 H 1.08995 * 109.48591 * 299.35561 * 24 22 21 45 45 H 1.08999 * 109.50894 * 179.30068 * 24 22 21 46 46 H 1.08993 * 109.49158 * 303.15571 * 25 19 18 47 47 H 1.09007 * 109.48794 * 63.21892 * 25 19 18 48 48 H 1.08006 * 119.74944 * 180.28990 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1853 1.2119 0.0000 4 6 3.5540 1.2256 -0.0049 5 6 4.2378 -0.0088 0.0014 6 6 5.6455 -0.0516 0.0029 7 1 6.1595 -0.8986 0.4330 8 6 6.3788 1.0038 -0.5532 9 7 5.7836 1.8813 -1.3191 10 14 8.2068 1.1586 -0.2011 11 1 8.9083 -0.0584 -0.6826 12 1 8.7465 2.3515 -0.9017 13 1 8.4184 1.3060 1.2613 14 6 3.4758 -1.2064 0.0066 15 6 4.1584 -2.5157 0.0126 16 6 3.7106 -3.5481 0.8514 17 6 4.3739 -4.7452 0.8245 18 6 5.4653 -4.9036 -0.0280 19 7 6.1390 -6.1150 -0.0579 20 6 6.6152 -6.4860 1.2818 21 6 7.2816 -7.8625 1.2205 22 7 8.3945 -7.8227 0.2615 23 6 9.1083 -9.1062 0.2298 24 6 7.9183 -7.4516 -1.0784 25 6 7.2522 -6.0750 -1.0165 26 7 5.8677 -3.9126 -0.8112 27 6 5.2547 -2.7468 -0.8206 28 7 2.1505 -1.1493 0.0058 29 1 -0.3634 0.0052 1.0277 30 1 -0.3634 0.8873 -0.5183 31 1 -0.3633 -0.8926 -0.5092 32 1 1.6345 2.1409 0.0004 33 1 4.0977 2.1588 -0.0091 34 1 6.2916 2.6127 -1.7040 35 1 2.8621 -3.4014 1.5031 36 1 4.0546 -5.5595 1.4580 37 1 7.3378 -5.7473 1.6286 38 1 5.7713 -6.5211 1.9709 39 1 6.5518 -8.6059 0.8999 40 1 7.6612 -8.1274 2.2073 41 1 9.9669 -9.0280 -0.4371 42 1 9.4498 -9.3569 1.2340 43 1 8.4377 -9.8860 -0.1312 44 1 7.1958 -8.1903 -1.4250 45 1 8.7619 -7.4167 -1.7677 46 1 6.8730 -5.8102 -2.0034 47 1 7.9819 -5.3316 -0.6955 48 1 5.6056 -1.9620 -1.4745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235967453.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:14 Heat of formation + Delta-G solvation = 77.957115 kcal Electronic energy + Delta-G solvation = -28865.094788 eV Core-core repulsion = 25112.426153 eV Total energy + Delta-G solvation = -3752.668635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.34990 -38.94488 -38.10772 -35.40734 -34.39713 -32.47677 -31.72089 -30.97502 -30.69446 -29.60001 -28.10579 -27.21836 -24.66265 -24.17384 -23.87974 -22.35917 -22.21499 -20.78558 -20.37376 -19.76165 -17.56306 -17.25004 -16.09220 -15.71947 -15.49780 -15.30633 -15.15278 -14.82342 -14.75689 -14.34510 -14.08300 -13.99186 -13.63478 -13.27165 -12.97794 -12.81229 -12.67038 -12.49797 -12.33540 -12.14094 -11.90044 -11.79536 -11.58903 -11.51352 -11.39988 -11.33465 -11.09570 -11.00939 -10.98896 -10.91191 -10.63454 -9.98483 -9.51119 -9.42786 -9.20113 -8.90647 -8.54065 -8.38867 -8.13989 -7.81856 -7.23395 -6.93589 -4.57697 1.60475 1.99247 2.56389 2.90101 2.96454 3.00355 3.11349 3.72449 3.77208 3.79752 4.41168 4.50947 4.72717 4.85914 4.92831 5.10068 5.19945 5.32141 5.34014 5.38106 5.41503 5.44689 5.47419 5.62491 5.63135 5.68305 5.69648 5.83662 5.86414 5.96379 6.00710 6.07044 6.20072 6.28404 6.34227 6.45504 6.49906 6.57933 6.67114 6.78005 6.80901 6.88408 6.90731 6.99478 7.07494 7.13176 7.21633 7.57917 7.62454 7.75525 7.84139 8.28612 8.51691 8.57091 8.65069 9.50843 9.91211 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011711 B = 0.003403 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.301684 B = 8226.112080 C =10160.756349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.007 4.007 3 C -0.142 4.142 4 C -0.126 4.126 5 C 0.085 3.915 6 C -0.441 4.441 7 H 0.086 0.914 8 C 0.077 3.923 9 N -0.783 5.783 10 Si 0.909 3.091 11 H -0.259 1.259 12 H -0.276 1.276 13 H -0.262 1.262 14 C 0.018 3.982 15 C -0.044 4.044 16 C -0.051 4.051 17 C -0.188 4.188 18 C 0.278 3.722 19 N -0.478 5.478 20 C 0.061 3.939 21 C 0.058 3.942 22 N -0.547 5.547 23 C 0.026 3.974 24 C 0.054 3.946 25 C 0.071 3.929 26 N -0.519 5.519 27 C 0.142 3.858 28 N -0.449 5.449 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.287 0.713 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.025 0.975 44 H 0.041 0.959 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.058 0.942 48 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 -12.431 2.984 13.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.149 4.149 3 C -0.162 4.162 4 C -0.152 4.152 5 C 0.081 3.919 6 C -0.470 4.470 7 H 0.104 0.896 8 C -0.143 4.143 9 N -0.407 5.407 10 Si 0.732 3.268 11 H -0.183 1.183 12 H -0.200 1.200 13 H -0.186 1.186 14 C -0.120 4.120 15 C -0.048 4.048 16 C -0.078 4.078 17 C -0.210 4.210 18 C 0.047 3.953 19 N -0.197 5.197 20 C -0.066 4.066 21 C -0.070 4.070 22 N -0.272 5.272 23 C -0.122 4.122 24 C -0.074 4.074 25 C -0.057 4.057 26 N -0.232 5.232 27 C -0.016 4.016 28 N -0.157 5.157 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.098 0.902 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.043 0.957 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.108 0.892 47 H 0.076 0.924 48 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.945 -13.169 2.289 13.936 hybrid contribution 0.448 1.136 0.544 1.337 sum 4.393 -12.032 2.834 13.119 Atomic orbital electron populations 1.20285 0.91505 1.00967 1.00417 1.20251 0.94849 0.88513 1.11334 1.21259 0.95432 0.97151 1.02395 1.21397 0.92612 0.98787 1.02387 1.18309 0.94011 0.90812 0.88808 1.19548 0.91004 1.04161 1.32264 0.89556 1.25979 1.01626 0.94147 0.92589 1.69756 1.39071 1.11140 1.20758 0.86315 0.81313 0.79087 0.80052 1.18347 1.20039 1.18621 1.19223 0.88302 0.90784 1.13714 1.19302 0.96090 0.93046 0.96338 1.21255 0.97950 0.91788 0.96785 1.21023 0.98135 0.98784 1.03052 1.19638 0.93572 0.87937 0.94113 1.59308 1.26116 1.25792 1.08440 1.22298 0.98992 0.96364 0.88954 1.22182 0.91800 0.96453 0.96607 1.62166 1.26250 1.30696 1.08075 1.22335 0.98230 0.89307 1.02335 1.22292 0.98491 0.96750 0.89891 1.21985 0.91181 0.95480 0.97030 1.67610 1.30987 1.00559 1.24092 1.22964 0.91131 0.92136 0.95401 1.66845 1.09532 1.29311 1.09998 0.93175 0.92879 0.92583 0.88284 0.85511 0.90225 0.85360 0.85857 0.92947 0.89529 0.93851 0.89998 0.91335 0.91436 0.95666 0.94104 0.90055 0.89184 0.92396 0.81579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.15 36.00 0.37 -0.94 16 2 C -0.01 -0.16 6.79 -82.40 -0.56 -0.72 16 3 C -0.14 -3.18 9.64 -39.83 -0.38 -3.56 16 4 C -0.13 -3.08 8.73 -38.98 -0.34 -3.42 16 5 C 0.09 2.14 5.55 -106.40 -0.59 1.55 16 6 C -0.44 -10.73 6.79 -37.93 -0.26 -10.98 16 7 H 0.09 2.09 6.42 -52.48 -0.34 1.75 16 8 C 0.08 1.77 5.21 -17.32 -0.09 1.68 16 9 N -0.78 -18.62 10.98 55.55 0.61 -18.01 16 10 Si 0.91 17.74 29.58 -169.99 -5.03 12.71 16 11 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 12 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 13 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 14 C 0.02 0.44 6.44 -82.25 -0.53 -0.09 16 15 C -0.04 -0.97 5.26 -104.74 -0.55 -1.52 16 16 C -0.05 -0.99 9.76 -39.28 -0.38 -1.37 16 17 C -0.19 -3.20 9.14 -39.64 -0.36 -3.56 16 18 C 0.28 4.96 6.40 -155.13 -0.99 3.96 16 19 N -0.48 -7.19 4.72 -173.02 -0.82 -8.01 16 20 C 0.06 0.76 5.36 -3.77 -0.02 0.74 16 21 C 0.06 0.61 5.62 -3.76 -0.02 0.58 16 22 N -0.55 -6.05 4.97 -242.75 -1.21 -7.25 16 23 C 0.03 0.22 9.60 60.06 0.58 0.80 16 24 C 0.05 0.62 5.62 -3.76 -0.02 0.60 16 25 C 0.07 1.01 4.78 -3.76 -0.02 0.99 16 26 N -0.52 -10.30 8.67 -12.08 -0.10 -10.41 16 27 C 0.14 3.04 9.01 -17.08 -0.15 2.89 16 28 N -0.45 -10.70 10.07 -5.46 -0.05 -10.76 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 33 H 0.13 3.12 6.34 -52.49 -0.33 2.79 16 34 H 0.29 6.22 8.30 -40.82 -0.34 5.88 16 35 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16 36 H 0.12 1.75 7.15 -52.49 -0.38 1.37 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.98 6.76 -51.93 -0.35 0.63 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.72 8.13 -51.93 -0.42 0.29 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.50 8.13 -51.93 -0.42 0.07 16 43 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.09 1.36 7.81 -51.93 -0.41 0.96 16 47 H 0.06 0.93 8.04 -51.92 -0.42 0.51 16 48 H 0.17 3.73 6.78 -52.48 -0.36 3.38 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -27.12 383.33 -12.36 -39.48 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -7.20 Total: 8.84 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -4.33 Total: -12.37 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -1.57 Total: -54.43 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -27.12 -12.36 -39.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235967453.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.438 kcal (2) G-P(sol) polarization free energy of solvation -27.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds