Wall clock time and date at job start Tue Mar 31 2020 22:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38881 * 119.23870 * 2 1 4 4 C 1.36881 * 119.81475 * 180.23862 * 3 2 1 5 5 C 1.41116 * 118.40299 * 359.47838 * 4 3 2 6 6 C 1.40841 * 120.72317 * 180.29386 * 5 4 3 7 7 H 1.08007 * 119.99771 * 152.92329 * 6 5 4 8 8 C 1.40028 * 120.00338 * 332.92609 * 6 5 4 9 9 N 1.30803 * 119.99620 * 345.41096 * 8 6 5 10 10 Si 1.86801 * 120.00192 * 165.40756 * 8 6 5 11 11 H 1.48498 * 109.46913 * 60.00241 * 10 8 6 12 12 H 1.48498 * 109.47229 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47095 * 300.00250 * 10 8 6 14 14 C 1.41939 * 118.55398 * 0.27399 * 5 4 3 15 15 C 1.47657 * 120.00068 * 179.97438 * 14 5 4 16 16 C 1.40352 * 120.48100 * 136.39700 * 15 14 5 17 17 C 1.36885 * 118.49003 * 180.02562 * 16 15 14 18 18 C 1.39390 * 119.38831 * 359.97438 * 17 16 15 19 19 N 1.38649 * 119.53234 * 180.02562 * 18 17 16 20 20 C 1.46951 * 110.99821 * 303.79679 * 19 18 17 21 21 C 1.53054 * 109.36647 * 176.81069 * 20 19 18 22 22 N 1.46958 * 109.36106 * 58.40371 * 21 20 19 23 23 C 1.46900 * 111.00069 * 176.81258 * 22 21 20 24 24 C 1.46962 * 110.88197 * 300.68115 * 22 21 20 25 25 C 1.46958 * 110.99951 * 180.02562 * 19 18 17 26 26 N 1.32566 * 120.93614 * 359.97438 * 18 17 16 27 27 C 1.31720 * 121.64101 * 359.74796 * 26 18 17 28 28 N 1.31725 * 119.24687 * 179.70839 * 2 1 3 29 29 H 1.09004 * 109.47285 * 270.29130 * 1 2 3 30 30 H 1.08997 * 109.47551 * 30.29213 * 1 2 3 31 31 H 1.09000 * 109.47040 * 150.29660 * 1 2 3 32 32 H 1.08004 * 120.09889 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.79897 * 179.75069 * 4 3 2 34 34 H 0.97007 * 119.99248 * 179.97438 * 9 8 6 35 35 H 1.07998 * 120.75749 * 0.02562 * 16 15 14 36 36 H 1.07997 * 120.30837 * 179.97438 * 17 16 15 37 37 H 1.09003 * 109.49509 * 296.77742 * 20 19 18 38 38 H 1.09000 * 109.48897 * 56.84842 * 20 19 18 39 39 H 1.08999 * 109.48838 * 298.44093 * 21 20 19 40 40 H 1.08997 * 109.50752 * 178.38185 * 21 20 19 41 41 H 1.08997 * 109.47264 * 183.79873 * 23 22 21 42 42 H 1.08994 * 109.46984 * 303.80351 * 23 22 21 43 43 H 1.08999 * 109.47011 * 63.80009 * 23 22 21 44 44 H 1.08995 * 109.48591 * 299.35561 * 24 22 21 45 45 H 1.08999 * 109.50894 * 179.30068 * 24 22 21 46 46 H 1.08993 * 109.49158 * 303.15571 * 25 19 18 47 47 H 1.09007 * 109.48794 * 63.21892 * 25 19 18 48 48 H 1.08006 * 119.74944 * 180.28990 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1853 1.2119 0.0000 4 6 3.5540 1.2256 -0.0049 5 6 4.2378 -0.0088 0.0014 6 6 5.6455 -0.0516 0.0029 7 1 6.1595 -0.8986 0.4330 8 6 6.3788 1.0038 -0.5532 9 7 5.7836 1.8813 -1.3191 10 14 8.2068 1.1586 -0.2011 11 1 8.9083 -0.0584 -0.6826 12 1 8.7465 2.3515 -0.9017 13 1 8.4184 1.3060 1.2613 14 6 3.4758 -1.2064 0.0066 15 6 4.1584 -2.5157 0.0126 16 6 3.7106 -3.5481 0.8514 17 6 4.3739 -4.7452 0.8245 18 6 5.4653 -4.9036 -0.0280 19 7 6.1390 -6.1150 -0.0579 20 6 6.6152 -6.4860 1.2818 21 6 7.2816 -7.8625 1.2205 22 7 8.3945 -7.8227 0.2615 23 6 9.1083 -9.1062 0.2298 24 6 7.9183 -7.4516 -1.0784 25 6 7.2522 -6.0750 -1.0165 26 7 5.8677 -3.9126 -0.8112 27 6 5.2547 -2.7468 -0.8206 28 7 2.1505 -1.1493 0.0058 29 1 -0.3634 0.0052 1.0277 30 1 -0.3634 0.8873 -0.5183 31 1 -0.3633 -0.8926 -0.5092 32 1 1.6345 2.1409 0.0004 33 1 4.0977 2.1588 -0.0091 34 1 6.2916 2.6127 -1.7040 35 1 2.8621 -3.4014 1.5031 36 1 4.0546 -5.5595 1.4580 37 1 7.3378 -5.7473 1.6286 38 1 5.7713 -6.5211 1.9709 39 1 6.5518 -8.6059 0.8999 40 1 7.6612 -8.1274 2.2073 41 1 9.9669 -9.0280 -0.4371 42 1 9.4498 -9.3569 1.2340 43 1 8.4377 -9.8860 -0.1312 44 1 7.1958 -8.1903 -1.4250 45 1 8.7619 -7.4167 -1.7677 46 1 6.8730 -5.8102 -2.0034 47 1 7.9819 -5.3316 -0.6955 48 1 5.6056 -1.9620 -1.4745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235967453.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:13 Heat of formation + Delta-G solvation = 62.645061 kcal Electronic energy + Delta-G solvation = -28865.758768 eV Core-core repulsion = 25112.426153 eV Total energy + Delta-G solvation = -3753.332616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.72230 -40.46439 -39.47476 -36.57495 -36.13073 -34.02758 -33.23113 -32.60506 -31.87624 -30.95542 -29.61412 -28.52985 -26.17490 -25.36005 -25.06915 -23.83126 -23.56655 -22.44880 -21.97619 -20.84317 -19.31967 -18.57125 -17.63538 -17.35313 -17.04523 -16.39274 -16.20367 -16.04574 -15.81178 -15.72523 -15.61378 -15.27038 -15.06615 -14.83521 -14.46794 -14.22806 -14.11441 -13.86293 -13.48177 -13.46385 -13.23089 -13.11170 -13.04898 -12.99197 -12.68080 -12.67012 -12.62721 -12.30520 -12.21647 -11.95974 -11.93812 -11.71471 -11.21475 -10.93357 -10.68009 -10.45935 -10.14115 -9.94341 -9.48222 -9.33114 -8.87142 -8.64033 -6.40513 0.02557 0.45447 0.84133 1.12728 1.34628 1.44009 1.48128 2.13559 2.49716 2.66913 2.93443 2.97413 3.50523 3.62872 3.78657 3.85849 4.00402 4.09118 4.20574 4.22411 4.26545 4.31702 4.37748 4.39743 4.51947 4.57836 4.63502 4.64832 4.66300 4.79377 4.85450 4.89132 4.93010 4.96436 4.97773 5.00411 5.03753 5.05832 5.08976 5.17939 5.28262 5.35263 5.48362 5.57302 5.73853 5.80575 5.93115 6.03073 6.04175 6.06171 6.23733 6.47371 6.70804 6.77303 7.10916 7.70766 8.18980 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011711 B = 0.003403 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.301684 B = 8226.112080 C =10160.756349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.016 4.016 3 C -0.146 4.146 4 C -0.147 4.147 5 C 0.057 3.943 6 C -0.460 4.460 7 H 0.077 0.923 8 C 0.045 3.955 9 N -0.811 5.811 10 Si 0.970 3.030 11 H -0.264 1.264 12 H -0.262 1.262 13 H -0.260 1.260 14 C 0.008 3.992 15 C -0.072 4.072 16 C -0.049 4.049 17 C -0.175 4.175 18 C 0.282 3.718 19 N -0.475 5.475 20 C 0.058 3.942 21 C 0.063 3.937 22 N -0.564 5.564 23 C 0.027 3.973 24 C 0.063 3.937 25 C 0.073 3.927 26 N -0.532 5.532 27 C 0.134 3.866 28 N -0.465 5.465 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.294 0.706 35 H 0.137 0.863 36 H 0.162 0.838 37 H 0.036 0.964 38 H 0.104 0.896 39 H 0.049 0.951 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.031 0.969 44 H 0.045 0.955 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.036 0.964 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.595 -14.590 4.116 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.158 4.158 3 C -0.166 4.166 4 C -0.173 4.173 5 C 0.052 3.948 6 C -0.489 4.489 7 H 0.095 0.905 8 C -0.173 4.173 9 N -0.436 5.436 10 Si 0.791 3.209 11 H -0.189 1.189 12 H -0.186 1.186 13 H -0.185 1.185 14 C -0.130 4.130 15 C -0.076 4.076 16 C -0.076 4.076 17 C -0.197 4.197 18 C 0.049 3.951 19 N -0.193 5.193 20 C -0.068 4.068 21 C -0.065 4.065 22 N -0.289 5.289 23 C -0.120 4.120 24 C -0.065 4.065 25 C -0.055 4.055 26 N -0.246 5.246 27 C -0.024 4.024 28 N -0.173 5.173 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.155 0.845 36 H 0.179 0.821 37 H 0.055 0.945 38 H 0.122 0.878 39 H 0.067 0.933 40 H 0.123 0.877 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.112 0.888 46 H 0.094 0.906 47 H 0.054 0.946 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.921 -15.334 3.422 16.193 hybrid contribution 0.391 1.662 0.196 1.719 sum 4.312 -13.672 3.618 14.785 Atomic orbital electron populations 1.20346 0.87990 1.02265 1.02035 1.21087 0.97269 0.88045 1.09368 1.21575 0.94841 0.98673 1.01517 1.21454 0.93756 0.98301 1.03829 1.18624 0.94752 0.91583 0.89822 1.19562 0.91141 1.04726 1.33450 0.90503 1.26631 1.05218 0.93482 0.91950 1.69786 1.40654 1.11763 1.21405 0.85401 0.76528 0.79105 0.79826 1.18871 1.18553 1.18470 1.19587 0.88714 0.91631 1.13096 1.19315 0.96895 0.93214 0.98145 1.21368 0.98184 0.91817 0.96218 1.21322 0.96977 0.98854 1.02574 1.20088 0.93815 0.88177 0.92984 1.59399 1.26324 1.23545 1.10030 1.22461 0.99486 0.97328 0.87517 1.22199 0.91782 0.94809 0.97734 1.62170 1.26591 1.32538 1.07612 1.22381 0.98187 0.88036 1.03398 1.22182 0.98782 0.94685 0.90854 1.21946 0.90493 0.97007 0.96013 1.67592 1.31210 1.00588 1.25245 1.22591 0.91599 0.92443 0.95750 1.66966 1.09378 1.30127 1.10867 0.91279 0.90536 0.92323 0.85404 0.86506 0.89525 0.84528 0.82063 0.94534 0.87783 0.93254 0.87735 0.90771 0.90174 0.94998 0.93716 0.88792 0.90640 0.94555 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.28 10.15 71.23 0.72 -1.56 16 2 C -0.02 -0.69 6.79 42.73 0.29 -0.40 16 3 C -0.15 -6.55 9.64 22.11 0.21 -6.34 16 4 C -0.15 -7.47 8.73 22.66 0.20 -7.27 16 5 C 0.06 2.98 5.55 -21.02 -0.12 2.86 16 6 C -0.46 -23.62 6.79 23.34 0.16 -23.47 16 7 H 0.08 3.97 6.42 -2.91 -0.02 3.95 16 8 C 0.04 2.14 5.21 85.28 0.44 2.58 16 9 N -0.81 -40.03 10.98 21.84 0.24 -39.79 16 10 Si 0.97 37.44 29.58 68.60 2.03 39.47 16 11 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 12 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 13 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 14 C 0.01 0.39 6.44 42.43 0.27 0.66 16 15 C -0.07 -3.26 5.26 -19.94 -0.10 -3.37 16 16 C -0.05 -1.89 9.76 22.47 0.22 -1.68 16 17 C -0.18 -5.71 9.14 22.23 0.20 -5.51 16 18 C 0.28 9.88 6.40 133.20 0.85 10.73 16 19 N -0.47 -13.65 4.72 -701.32 -3.31 -16.97 16 20 C 0.06 1.33 5.36 86.31 0.46 1.80 16 21 C 0.06 1.12 5.62 86.31 0.49 1.61 16 22 N -0.56 -11.04 4.97 -921.94 -4.58 -15.62 16 23 C 0.03 0.38 9.60 127.69 1.23 1.60 16 24 C 0.06 1.34 5.62 86.31 0.49 1.83 16 25 C 0.07 2.06 4.78 86.31 0.41 2.48 16 26 N -0.53 -21.79 8.67 -192.12 -1.66 -23.46 16 27 C 0.13 6.04 9.01 85.05 0.77 6.81 16 28 N -0.46 -22.45 10.07 -171.19 -1.72 -24.17 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.08 2.16 8.07 -2.39 -0.02 2.14 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 32 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 33 H 0.12 6.02 6.34 -2.91 -0.02 6.01 16 34 H 0.29 13.11 8.30 -92.70 -0.77 12.34 16 35 H 0.14 4.94 8.06 -2.91 -0.02 4.91 16 36 H 0.16 3.99 7.15 -2.91 -0.02 3.97 16 37 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.10 2.01 6.76 -2.39 -0.02 1.99 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.10 1.43 8.13 -2.39 -0.02 1.41 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 0.90 8.13 -2.39 -0.02 0.88 16 43 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 2.32 7.81 -2.39 -0.02 2.30 16 47 H 0.04 1.18 8.04 -2.38 -0.02 1.16 16 48 H 0.14 7.00 6.78 -2.91 -0.02 6.98 16 Total: -1.00 -61.31 383.33 -0.86 -62.17 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: 0.96 Total: 34.99 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 7.19 Total: -16.63 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -11.04 Total: -120.00 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -61.31 -0.86 -62.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235967453.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.814 kcal (2) G-P(sol) polarization free energy of solvation -61.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds