Wall clock time and date at job start Tue Mar 31 2020 22:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31257 * 119.79986 * 2 1 4 4 C 1.32984 * 121.73800 * 179.97438 * 3 2 1 5 5 C 1.48061 * 119.44715 * 179.97438 * 4 3 2 6 6 C 1.40160 * 120.88734 * 179.71710 * 5 4 3 7 7 C 1.37782 * 119.16810 * 180.24679 * 6 5 4 8 8 N 1.32015 * 121.00605 * 0.02652 * 7 6 5 9 9 C 1.32438 * 121.95397 * 359.97438 * 8 7 6 10 10 N 1.39043 * 119.63950 * 180.02562 * 9 8 7 11 11 C 1.46954 * 110.99744 * 123.77283 * 10 9 8 12 12 C 1.53058 * 109.36069 * 176.81026 * 11 10 9 13 13 N 1.46950 * 109.36256 * 58.40728 * 12 11 10 14 14 C 1.46903 * 110.99874 * 176.80830 * 13 12 11 15 15 C 1.46960 * 110.88148 * 300.67280 * 13 12 11 16 16 C 1.46959 * 110.99778 * 359.97438 * 10 9 8 17 17 C 1.38931 * 120.71851 * 359.97438 * 9 8 7 18 18 C 1.39827 * 121.10577 * 0.24676 * 4 3 2 19 19 C 1.36665 * 119.46756 * 359.49859 * 18 4 3 20 20 C 1.40956 * 119.80132 * 179.97438 * 2 1 3 21 21 C 1.41059 * 120.56011 * 359.97438 * 20 2 1 22 22 H 1.07999 * 120.00368 * 24.92292 * 21 20 2 23 23 C 1.40081 * 120.00062 * 204.92255 * 21 20 2 24 24 N 1.30753 * 120.00048 * 14.67508 * 23 21 20 25 25 Si 1.86797 * 119.99882 * 194.67424 * 23 21 20 26 26 H 1.48505 * 109.47082 * 89.99896 * 25 23 21 27 27 H 1.48497 * 109.47016 * 209.99897 * 25 23 21 28 28 H 1.48499 * 109.47538 * 329.99850 * 25 23 21 29 29 H 1.09004 * 109.47409 * 89.99920 * 1 2 3 30 30 H 1.09001 * 109.47050 * 209.99910 * 1 2 3 31 31 H 1.09002 * 109.47554 * 330.00025 * 1 2 3 32 32 H 1.08000 * 120.41630 * 0.24534 * 6 5 4 33 33 H 1.08005 * 119.50008 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.49368 * 296.77911 * 11 10 9 35 35 H 1.09001 * 109.48773 * 56.84749 * 11 10 9 36 36 H 1.08995 * 109.48782 * 298.43658 * 12 11 10 37 37 H 1.09004 * 109.50017 * 178.38329 * 12 11 10 38 38 H 1.08999 * 109.47071 * 183.79406 * 14 13 12 39 39 H 1.08999 * 109.47320 * 303.79756 * 14 13 12 40 40 H 1.09004 * 109.46743 * 63.80375 * 14 13 12 41 41 H 1.08992 * 109.48953 * 299.35816 * 15 13 12 42 42 H 1.08994 * 109.50608 * 179.29500 * 15 13 12 43 43 H 1.09000 * 109.49114 * 303.15072 * 16 10 9 44 44 H 1.09001 * 109.49054 * 63.20011 * 16 10 9 45 45 H 1.08004 * 120.53421 * 180.02562 * 17 9 8 46 46 H 1.08001 * 120.26616 * 179.74159 * 18 4 3 47 47 H 1.08000 * 120.79575 * 180.24309 * 19 18 4 48 48 H 0.96995 * 119.99780 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1390 0.0000 4 6 3.4884 1.1840 0.0005 5 6 4.1722 2.4972 -0.0001 6 6 5.5714 2.5798 0.0064 7 6 6.1708 3.8204 0.0107 8 7 5.4478 4.9250 0.0095 9 6 4.1238 4.8961 0.0035 10 7 3.4100 6.0893 0.0019 11 6 2.4903 6.1511 -1.1426 12 6 1.6687 7.4401 -1.0642 13 7 2.5756 8.5964 -1.0581 14 6 1.8214 9.8570 -1.0598 15 6 3.4954 8.5345 0.0864 16 6 4.3170 7.2455 0.0081 17 6 3.4404 3.6865 -0.0023 18 6 4.2508 0.0119 -0.0041 19 6 3.6200 -1.2005 0.0012 20 6 2.2075 -1.2231 0.0005 21 6 1.5099 -2.4492 0.0016 22 1 0.5055 -2.4994 -0.3921 23 6 2.1200 -3.6017 0.5134 24 7 3.2007 -3.5006 1.2424 25 14 1.3895 -5.2830 0.1542 26 1 1.9832 -5.8241 -1.0948 27 1 1.6858 -6.2025 1.2820 28 1 -0.0811 -5.1590 -0.0101 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 6.1721 1.6823 0.0079 33 1 7.2486 3.8903 0.0153 34 1 3.0626 6.1406 -2.0702 35 1 1.8209 5.2912 -1.1181 36 1 1.0756 7.4382 -0.1498 37 1 1.0060 7.5023 -1.9274 38 1 2.5151 10.6953 -1.1232 39 1 1.1484 9.8767 -1.9170 40 1 1.2411 9.9344 -0.1403 41 1 2.9230 8.5451 1.0139 42 1 4.1648 9.3944 0.0622 43 1 4.9793 7.1835 0.8716 44 1 4.9104 7.2472 -0.9061 45 1 2.3605 3.6664 -0.0076 46 1 5.3295 0.0642 -0.0078 47 1 4.1878 -2.1192 0.0018 48 1 3.6232 -4.2986 1.5964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238820041.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:33 Heat of formation + Delta-G solvation = 76.615232 kcal Electronic energy + Delta-G solvation = -28366.223280 eV Core-core repulsion = 24613.496457 eV Total energy + Delta-G solvation = -3752.726824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.38795 -38.94797 -38.23370 -35.47839 -34.47337 -32.84377 -31.45134 -31.00466 -30.32723 -30.13659 -27.69060 -26.99883 -25.70806 -24.14380 -23.94256 -22.57727 -22.18021 -20.82839 -20.23241 -19.64004 -17.62193 -17.25096 -16.11257 -15.91020 -15.39185 -15.35522 -15.17658 -14.83993 -14.80698 -14.45542 -14.29804 -13.99466 -13.56455 -13.48625 -13.36321 -12.95763 -12.64768 -12.56579 -12.31242 -11.93054 -11.85409 -11.77153 -11.71679 -11.48931 -11.35543 -11.30593 -11.22854 -11.02478 -10.98788 -10.93901 -10.74698 -9.93576 -9.75858 -9.59713 -9.18709 -9.03330 -8.55118 -8.39613 -8.18079 -7.76000 -7.46169 -7.08395 -4.67690 1.46815 1.67388 2.60279 2.84197 2.88757 2.91517 3.10544 3.64824 3.66979 3.75542 4.21321 4.55302 4.69020 4.83803 4.86355 5.06210 5.15207 5.17913 5.28965 5.36956 5.37479 5.44826 5.46222 5.60974 5.61977 5.65224 5.67113 5.78331 5.85562 5.91305 5.96398 6.09565 6.18870 6.26307 6.34108 6.42934 6.55022 6.59225 6.71699 6.74098 6.74978 6.80299 6.88323 6.92852 6.97306 7.11409 7.19922 7.52322 7.57587 7.66717 7.78712 8.20331 8.39631 8.45481 8.50418 9.46274 9.77099 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.002376 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.768734 B =11781.028518 C =12904.183103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.011 3.989 3 N -0.440 5.440 4 C -0.014 4.014 5 C 0.081 3.919 6 C -0.211 4.211 7 C 0.119 3.881 8 N -0.544 5.544 9 C 0.302 3.698 10 N -0.479 5.479 11 C 0.061 3.939 12 C 0.057 3.943 13 N -0.547 5.547 14 C 0.026 3.974 15 C 0.053 3.947 16 C 0.073 3.927 17 C -0.177 4.177 18 C -0.117 4.117 19 C -0.146 4.146 20 C 0.075 3.925 21 C -0.423 4.423 22 H 0.091 0.909 23 C 0.069 3.931 24 N -0.772 5.772 25 Si 0.918 3.082 26 H -0.264 1.264 27 H -0.274 1.274 28 H -0.257 1.257 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.130 0.870 33 H 0.148 0.852 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.138 0.862 46 H 0.103 0.897 47 H 0.130 0.870 48 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.138 13.424 -2.821 13.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.137 4.137 3 N -0.148 5.148 4 C -0.147 4.147 5 C 0.073 3.927 6 C -0.233 4.233 7 C -0.037 4.037 8 N -0.260 5.260 9 C 0.073 3.927 10 N -0.197 5.197 11 C -0.065 4.065 12 C -0.071 4.071 13 N -0.272 5.272 14 C -0.122 4.122 15 C -0.075 4.075 16 C -0.055 4.055 17 C -0.200 4.200 18 C -0.138 4.138 19 C -0.170 4.170 20 C 0.070 3.930 21 C -0.452 4.452 22 H 0.109 0.891 23 C -0.152 4.152 24 N -0.395 5.395 25 Si 0.741 3.259 26 H -0.189 1.189 27 H -0.199 1.199 28 H -0.181 1.181 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.165 0.835 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.156 0.844 46 H 0.121 0.879 47 H 0.148 0.852 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.263 14.937 -2.672 15.177 hybrid contribution -0.052 -2.492 0.183 2.499 sum 0.212 12.446 -2.489 12.694 Atomic orbital electron populations 1.20269 0.90877 1.01357 1.00473 1.21004 0.95185 0.87894 1.09580 1.66678 1.08579 1.30491 1.09070 1.18547 0.89136 0.90175 1.16883 1.18854 0.91908 0.92149 0.89805 1.22003 0.94650 0.98977 1.07709 1.22149 0.99053 0.87262 0.95225 1.67385 1.06327 1.32730 1.19519 1.19569 0.88373 0.89735 0.95061 1.59356 1.18774 1.00891 1.40681 1.22315 0.95098 0.98251 0.90841 1.22195 0.94140 0.89307 1.01464 1.62180 1.19649 1.02456 1.42897 1.22338 0.97699 0.91656 1.00545 1.22282 0.95475 0.98069 0.91670 1.21966 0.93452 0.87114 1.02945 1.21555 1.01452 0.90184 1.06852 1.21293 0.98680 0.93360 1.00418 1.21372 0.94699 0.96730 1.04209 1.18465 0.92630 0.93209 0.88669 1.19793 1.01456 0.91839 1.32065 0.89097 1.26155 0.94320 1.02244 0.92482 1.69750 1.16101 1.32588 1.21087 0.86126 0.80743 0.79779 0.79222 1.18891 1.19915 1.18101 0.93218 0.91418 0.93055 0.85256 0.83505 0.93070 0.88987 0.93643 0.89819 0.91389 0.91369 0.95592 0.94033 0.90111 0.89394 0.92639 0.84412 0.87948 0.85221 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 9.58 36.00 0.34 -1.09 16 2 C 0.01 0.25 6.86 -81.81 -0.56 -0.31 16 3 N -0.44 -10.49 9.40 -5.39 -0.05 -10.54 16 4 C -0.01 -0.33 6.74 -82.74 -0.56 -0.88 16 5 C 0.08 1.66 5.91 -104.62 -0.62 1.04 16 6 C -0.21 -3.71 9.48 -39.03 -0.37 -4.08 16 7 C 0.12 1.91 11.16 -17.64 -0.20 1.71 16 8 N -0.54 -9.34 8.68 -12.52 -0.11 -9.45 16 9 C 0.30 5.31 6.40 -155.02 -0.99 4.31 16 10 N -0.48 -7.26 4.73 -173.07 -0.82 -8.08 16 11 C 0.06 0.82 5.37 -3.76 -0.02 0.80 16 12 C 0.06 0.63 5.62 -3.77 -0.02 0.61 16 13 N -0.55 -5.92 4.97 -242.75 -1.21 -7.13 16 14 C 0.03 0.21 9.60 60.07 0.58 0.79 16 15 C 0.05 0.58 5.62 -3.76 -0.02 0.56 16 16 C 0.07 0.97 4.79 -3.76 -0.02 0.95 16 17 C -0.18 -3.41 8.75 -38.80 -0.34 -3.75 16 18 C -0.12 -2.65 9.40 -39.56 -0.37 -3.02 16 19 C -0.15 -3.55 8.73 -39.00 -0.34 -3.89 16 20 C 0.08 1.87 5.59 -106.65 -0.60 1.27 16 21 C -0.42 -9.98 8.16 -37.82 -0.31 -10.29 16 22 H 0.09 2.01 6.84 -52.49 -0.36 1.65 16 23 C 0.07 1.55 5.22 -17.32 -0.09 1.46 16 24 N -0.77 -17.97 10.82 55.55 0.60 -17.37 16 25 Si 0.92 16.63 29.58 -169.99 -5.03 11.60 16 26 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 27 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 28 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.30 6.75 -51.93 -0.35 0.95 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.13 2.06 6.28 -52.49 -0.33 1.73 16 33 H 0.15 1.84 8.06 -52.48 -0.42 1.42 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.25 6.78 -51.93 -0.35 0.90 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 40 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.09 1.21 7.82 -51.93 -0.41 0.80 16 44 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 45 H 0.14 2.71 6.73 -52.48 -0.35 2.35 16 46 H 0.10 2.03 6.23 -52.49 -0.33 1.70 16 47 H 0.13 3.18 6.16 -52.49 -0.32 2.86 16 48 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -27.17 381.90 -12.36 -39.53 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -7.00 Total: 9.48 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -4.50 Total: -13.80 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -1.58 Total: -52.56 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -27.17 -12.36 -39.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238820041.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.145 kcal (2) G-P(sol) polarization free energy of solvation -27.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds