Wall clock time and date at job start Tue Mar 31 2020 22:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31257 * 119.79986 * 2 1 4 4 C 1.32984 * 121.73800 * 179.97438 * 3 2 1 5 5 C 1.48061 * 119.44715 * 179.97438 * 4 3 2 6 6 C 1.40160 * 120.88734 * 179.71710 * 5 4 3 7 7 C 1.37782 * 119.16810 * 180.24679 * 6 5 4 8 8 N 1.32015 * 121.00605 * 0.02652 * 7 6 5 9 9 C 1.32438 * 121.95397 * 359.97438 * 8 7 6 10 10 N 1.39043 * 119.63950 * 180.02562 * 9 8 7 11 11 C 1.46954 * 110.99744 * 123.77283 * 10 9 8 12 12 C 1.53058 * 109.36069 * 176.81026 * 11 10 9 13 13 N 1.46950 * 109.36256 * 58.40728 * 12 11 10 14 14 C 1.46903 * 110.99874 * 176.80830 * 13 12 11 15 15 C 1.46960 * 110.88148 * 300.67280 * 13 12 11 16 16 C 1.46959 * 110.99778 * 359.97438 * 10 9 8 17 17 C 1.38931 * 120.71851 * 359.97438 * 9 8 7 18 18 C 1.39827 * 121.10577 * 0.24676 * 4 3 2 19 19 C 1.36665 * 119.46756 * 359.49859 * 18 4 3 20 20 C 1.40956 * 119.80132 * 179.97438 * 2 1 3 21 21 C 1.41059 * 120.56011 * 359.97438 * 20 2 1 22 22 H 1.07999 * 120.00368 * 24.92292 * 21 20 2 23 23 C 1.40081 * 120.00062 * 204.92255 * 21 20 2 24 24 N 1.30753 * 120.00048 * 14.67508 * 23 21 20 25 25 Si 1.86797 * 119.99882 * 194.67424 * 23 21 20 26 26 H 1.48505 * 109.47082 * 89.99896 * 25 23 21 27 27 H 1.48497 * 109.47016 * 209.99897 * 25 23 21 28 28 H 1.48499 * 109.47538 * 329.99850 * 25 23 21 29 29 H 1.09004 * 109.47409 * 89.99920 * 1 2 3 30 30 H 1.09001 * 109.47050 * 209.99910 * 1 2 3 31 31 H 1.09002 * 109.47554 * 330.00025 * 1 2 3 32 32 H 1.08000 * 120.41630 * 0.24534 * 6 5 4 33 33 H 1.08005 * 119.50008 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.49368 * 296.77911 * 11 10 9 35 35 H 1.09001 * 109.48773 * 56.84749 * 11 10 9 36 36 H 1.08995 * 109.48782 * 298.43658 * 12 11 10 37 37 H 1.09004 * 109.50017 * 178.38329 * 12 11 10 38 38 H 1.08999 * 109.47071 * 183.79406 * 14 13 12 39 39 H 1.08999 * 109.47320 * 303.79756 * 14 13 12 40 40 H 1.09004 * 109.46743 * 63.80375 * 14 13 12 41 41 H 1.08992 * 109.48953 * 299.35816 * 15 13 12 42 42 H 1.08994 * 109.50608 * 179.29500 * 15 13 12 43 43 H 1.09000 * 109.49114 * 303.15072 * 16 10 9 44 44 H 1.09001 * 109.49054 * 63.20011 * 16 10 9 45 45 H 1.08004 * 120.53421 * 180.02562 * 17 9 8 46 46 H 1.08001 * 120.26616 * 179.74159 * 18 4 3 47 47 H 1.08000 * 120.79575 * 180.24309 * 19 18 4 48 48 H 0.96995 * 119.99780 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1390 0.0000 4 6 3.4884 1.1840 0.0005 5 6 4.1722 2.4972 -0.0001 6 6 5.5714 2.5798 0.0064 7 6 6.1708 3.8204 0.0107 8 7 5.4478 4.9250 0.0095 9 6 4.1238 4.8961 0.0035 10 7 3.4100 6.0893 0.0019 11 6 2.4903 6.1511 -1.1426 12 6 1.6687 7.4401 -1.0642 13 7 2.5756 8.5964 -1.0581 14 6 1.8214 9.8570 -1.0598 15 6 3.4954 8.5345 0.0864 16 6 4.3170 7.2455 0.0081 17 6 3.4404 3.6865 -0.0023 18 6 4.2508 0.0119 -0.0041 19 6 3.6200 -1.2005 0.0012 20 6 2.2075 -1.2231 0.0005 21 6 1.5099 -2.4492 0.0016 22 1 0.5055 -2.4994 -0.3921 23 6 2.1200 -3.6017 0.5134 24 7 3.2007 -3.5006 1.2424 25 14 1.3895 -5.2830 0.1542 26 1 1.9832 -5.8241 -1.0948 27 1 1.6858 -6.2025 1.2820 28 1 -0.0811 -5.1590 -0.0101 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 6.1721 1.6823 0.0079 33 1 7.2486 3.8903 0.0153 34 1 3.0626 6.1406 -2.0702 35 1 1.8209 5.2912 -1.1181 36 1 1.0756 7.4382 -0.1498 37 1 1.0060 7.5023 -1.9274 38 1 2.5151 10.6953 -1.1232 39 1 1.1484 9.8767 -1.9170 40 1 1.2411 9.9344 -0.1403 41 1 2.9230 8.5451 1.0139 42 1 4.1648 9.3944 0.0622 43 1 4.9793 7.1835 0.8716 44 1 4.9104 7.2472 -0.9061 45 1 2.3605 3.6664 -0.0076 46 1 5.3295 0.0642 -0.0078 47 1 4.1878 -2.1192 0.0018 48 1 3.6232 -4.2986 1.5964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238820041.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:31 Heat of formation + Delta-G solvation = 61.719911 kcal Electronic energy + Delta-G solvation = -28366.869190 eV Core-core repulsion = 24613.496457 eV Total energy + Delta-G solvation = -3753.372733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.68496 -40.47090 -39.53926 -36.62679 -36.09855 -34.41796 -33.04992 -32.25750 -31.70126 -31.49450 -28.93222 -28.47038 -27.32892 -25.19267 -25.09080 -24.04110 -23.50571 -22.37960 -21.75993 -20.78903 -19.33597 -18.61300 -17.58324 -17.34144 -16.77447 -16.52751 -16.33177 -16.05305 -15.86196 -15.72634 -15.57853 -15.42185 -15.07568 -14.88996 -14.78678 -14.24980 -14.17774 -13.56308 -13.54986 -13.40856 -13.33212 -13.18607 -13.00062 -12.82908 -12.75145 -12.67661 -12.62456 -12.32609 -12.21110 -11.97308 -11.94339 -11.63200 -11.36508 -10.92820 -10.72766 -10.42864 -10.19944 -9.97369 -9.37633 -9.20817 -9.04668 -8.77115 -6.46306 -0.08576 0.28770 0.93796 1.13633 1.39335 1.53163 1.56855 2.14012 2.44543 2.64646 2.92617 3.02656 3.49922 3.63745 3.68164 3.81610 3.98605 4.06864 4.15442 4.20210 4.24261 4.34433 4.35814 4.41110 4.52590 4.55449 4.62332 4.63352 4.64566 4.77424 4.82216 4.84529 4.93198 4.93894 4.96163 4.97543 5.02514 5.03788 5.05246 5.14025 5.23099 5.45736 5.48086 5.59339 5.68095 5.80472 5.92403 5.98858 6.00529 6.03089 6.23310 6.42825 6.64121 6.72350 7.08436 7.66959 8.12418 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.002376 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.768734 B =11781.028518 C =12904.183103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.012 4.012 3 N -0.455 5.455 4 C -0.024 4.024 5 C 0.056 3.944 6 C -0.212 4.212 7 C 0.128 3.872 8 N -0.545 5.545 9 C 0.304 3.696 10 N -0.485 5.485 11 C 0.063 3.937 12 C 0.063 3.937 13 N -0.558 5.558 14 C 0.026 3.974 15 C 0.060 3.940 16 C 0.077 3.923 17 C -0.188 4.188 18 C -0.122 4.122 19 C -0.167 4.167 20 C 0.046 3.954 21 C -0.446 4.446 22 H 0.099 0.901 23 C 0.032 3.968 24 N -0.804 5.804 25 Si 0.991 3.009 26 H -0.261 1.261 27 H -0.268 1.268 28 H -0.251 1.251 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.145 0.855 33 H 0.189 0.811 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.028 0.972 41 H 0.039 0.961 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.122 0.878 48 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 14.680 -3.193 15.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.158 4.158 3 N -0.163 5.163 4 C -0.158 4.158 5 C 0.047 3.953 6 C -0.234 4.234 7 C -0.028 4.028 8 N -0.260 5.260 9 C 0.073 3.927 10 N -0.203 5.203 11 C -0.063 4.063 12 C -0.065 4.065 13 N -0.283 5.283 14 C -0.121 4.121 15 C -0.069 4.069 16 C -0.051 4.051 17 C -0.212 4.212 18 C -0.143 4.143 19 C -0.192 4.192 20 C 0.041 3.959 21 C -0.474 4.474 22 H 0.117 0.883 23 C -0.187 4.187 24 N -0.428 5.428 25 Si 0.810 3.190 26 H -0.186 1.186 27 H -0.193 1.193 28 H -0.174 1.174 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.163 0.837 33 H 0.206 0.794 34 H 0.061 0.939 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.139 0.861 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.488 16.226 -3.045 16.516 hybrid contribution -0.024 -2.688 0.311 2.706 sum 0.464 13.538 -2.734 13.819 Atomic orbital electron populations 1.20257 0.88629 1.01816 1.01530 1.21580 0.96974 0.87741 1.09545 1.66767 1.09233 1.30602 1.09743 1.19045 0.89200 0.91578 1.15946 1.18952 0.93302 0.91269 0.91763 1.22208 0.93510 1.00441 1.07263 1.22796 1.00841 0.86181 0.92987 1.67537 1.06038 1.33195 1.19269 1.19737 0.88672 0.90112 0.94163 1.59378 1.19034 1.00671 1.41235 1.22328 0.94712 0.99516 0.89728 1.22155 0.93834 0.88312 1.02176 1.62199 1.20043 1.03305 1.42751 1.22400 0.97975 0.90576 1.01151 1.22244 0.95607 0.97314 0.91697 1.21982 0.93463 0.87509 1.02100 1.21483 1.00937 0.90826 1.07906 1.21534 0.99994 0.92824 0.99915 1.21427 0.95004 0.97043 1.05683 1.18824 0.93162 0.94266 0.89649 1.20047 1.02083 0.92314 1.33001 0.88348 1.27018 0.94467 1.05574 0.91599 1.69793 1.17258 1.34023 1.21683 0.85048 0.80090 0.74824 0.79019 1.18567 1.19283 1.17396 0.91758 0.91141 0.92255 0.83748 0.79390 0.93929 0.89886 0.93922 0.87983 0.90166 0.90364 0.95301 0.94297 0.88003 0.89920 0.93648 0.85703 0.85535 0.86068 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.61 9.58 71.23 0.68 -1.93 16 2 C -0.01 -0.59 6.86 43.31 0.30 -0.29 16 3 N -0.45 -22.41 9.40 -170.96 -1.61 -24.02 16 4 C -0.02 -1.14 6.74 41.96 0.28 -0.85 16 5 C 0.06 2.29 5.91 -19.86 -0.12 2.17 16 6 C -0.21 -7.22 9.48 22.63 0.21 -7.01 16 7 C 0.13 3.81 11.16 84.56 0.94 4.76 16 8 N -0.54 -17.92 8.68 -193.52 -1.68 -19.60 16 9 C 0.30 10.55 6.40 132.99 0.85 11.41 16 10 N -0.48 -14.49 4.73 -701.48 -3.32 -17.81 16 11 C 0.06 1.68 5.37 86.31 0.46 2.14 16 12 C 0.06 1.31 5.62 86.31 0.49 1.80 16 13 N -0.56 -10.89 4.97 -921.93 -4.58 -15.47 16 14 C 0.03 0.36 9.60 127.69 1.23 1.59 16 15 C 0.06 1.18 5.62 86.31 0.49 1.67 16 16 C 0.08 1.95 4.79 86.31 0.41 2.36 16 17 C -0.19 -7.36 8.75 22.78 0.20 -7.16 16 18 C -0.12 -5.69 9.40 22.29 0.21 -5.48 16 19 C -0.17 -8.43 8.73 22.65 0.20 -8.24 16 20 C 0.05 2.36 5.59 -21.18 -0.12 2.24 16 21 C -0.45 -21.54 8.16 23.41 0.19 -21.34 16 22 H 0.10 4.42 6.84 -2.91 -0.02 4.40 16 23 C 0.03 1.43 5.22 85.30 0.45 1.88 16 24 N -0.80 -38.18 10.82 21.85 0.24 -37.95 16 25 Si 0.99 33.82 29.58 68.60 2.03 35.85 16 26 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 27 H -0.27 -8.82 7.11 99.48 0.71 -8.11 16 28 H -0.25 -8.21 7.11 99.48 0.71 -7.51 16 29 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 30 H 0.07 2.74 6.75 -2.39 -0.02 2.73 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.14 4.38 6.28 -2.91 -0.02 4.37 16 33 H 0.19 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 2.32 6.78 -2.39 -0.02 2.30 16 36 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 1.73 8.13 -2.38 -0.02 1.71 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 0.93 8.13 -2.39 -0.02 0.91 16 40 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.08 2.17 7.82 -2.39 -0.02 2.15 16 44 H 0.05 1.25 8.05 -2.39 -0.02 1.23 16 45 H 0.13 5.12 6.73 -2.91 -0.02 5.10 16 46 H 0.13 5.04 6.23 -2.91 -0.02 5.03 16 47 H 0.12 6.20 6.16 -2.91 -0.02 6.19 16 48 H 0.30 12.58 8.29 -92.71 -0.77 11.81 16 Total: -1.00 -60.19 381.90 -0.60 -60.79 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: 0.97 Total: 38.49 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 7.35 Total: -20.30 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -10.95 Total: -114.84 kcal Atomic # 14 Polarization: 33.82 SS G_CDS: 2.03 Total: 35.85 kcal Total: -60.19 -0.60 -60.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238820041.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.510 kcal (2) G-P(sol) polarization free energy of solvation -60.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds