Wall clock time and date at job start Tue Mar 31 2020 22:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38883 * 119.24416 * 2 1 4 4 C 1.36878 * 119.81812 * 179.97438 * 3 2 1 5 5 C 1.41122 * 118.40308 * 359.71838 * 4 3 2 6 6 C 1.40838 * 120.72387 * 180.26727 * 5 4 3 7 7 H 1.08001 * 119.99793 * 153.33065 * 6 5 4 8 8 C 1.40033 * 120.00210 * 333.33604 * 6 5 4 9 9 N 1.30805 * 119.99789 * 344.77796 * 8 6 5 10 10 Si 1.86801 * 120.00236 * 164.77627 * 8 6 5 11 11 H 1.48499 * 109.46807 * 90.00136 * 10 8 6 12 12 H 1.48496 * 109.46989 * 210.00076 * 10 8 6 13 13 H 1.48497 * 109.47091 * 329.99950 * 10 8 6 14 14 C 1.41941 * 118.54939 * 0.53851 * 5 4 3 15 15 C 1.47663 * 119.99581 * 179.73448 * 14 5 4 16 16 C 1.39662 * 120.48015 * 316.30294 * 15 14 5 17 17 N 1.31694 * 120.50376 * 179.74845 * 16 15 14 18 18 C 1.32594 * 121.63724 * 0.55991 * 17 16 15 19 19 N 1.38656 * 119.52624 * 179.71149 * 18 17 16 20 20 C 1.46994 * 110.99604 * 59.99426 * 19 18 17 21 21 C 1.53044 * 109.34235 * 176.81765 * 20 19 18 22 22 N 1.46959 * 109.38227 * 58.39307 * 21 20 19 23 23 C 1.46963 * 110.87641 * 300.66832 * 22 21 20 24 24 C 1.46955 * 110.99999 * 296.18179 * 19 18 17 25 25 C 1.39342 * 120.94082 * 359.43572 * 18 17 16 26 26 C 1.50697 * 120.30521 * 180.24931 * 25 18 17 27 27 C 1.36927 * 119.39029 * 0.27668 * 25 18 17 28 28 N 1.31732 * 119.24559 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46903 * 270.02214 * 1 2 3 30 30 H 1.08990 * 109.46874 * 30.01958 * 1 2 3 31 31 H 1.08999 * 109.47175 * 150.02923 * 1 2 3 32 32 H 1.07995 * 120.09020 * 359.97438 * 3 2 1 33 33 H 1.07993 * 120.79912 * 179.97438 * 4 3 2 34 34 H 0.97005 * 119.99823 * 180.02562 * 9 8 6 35 35 H 1.08004 * 119.75230 * 359.97438 * 16 15 14 36 36 H 1.09010 * 109.51870 * 56.84808 * 20 19 18 37 37 H 1.08999 * 109.48507 * 296.77360 * 20 19 18 38 38 H 1.09002 * 109.49047 * 298.41320 * 21 20 19 39 39 H 1.09002 * 109.49562 * 178.36606 * 21 20 19 40 40 H 1.00898 * 110.99916 * 64.53677 * 22 21 20 41 41 H 1.08999 * 109.48367 * 179.28948 * 23 22 21 42 42 H 1.08997 * 109.48895 * 299.32794 * 23 22 21 43 43 H 1.08993 * 109.48805 * 63.22555 * 24 19 18 44 44 H 1.09002 * 109.51051 * 303.16821 * 24 19 18 45 45 H 1.09005 * 109.46560 * 84.80004 * 26 25 18 46 46 H 1.08999 * 109.46989 * 204.79585 * 26 25 18 47 47 H 1.08998 * 109.47340 * 324.79981 * 26 25 18 48 48 H 1.08002 * 120.75772 * 180.02562 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2118 0.0000 4 6 3.5542 1.2255 0.0005 5 6 4.2379 -0.0090 0.0072 6 6 5.6456 -0.0519 0.0137 7 1 6.1579 -0.9026 0.4382 8 6 6.3809 1.0084 -0.5303 9 7 5.7913 1.8858 -1.3007 10 14 8.2039 1.1700 -0.1556 11 1 8.9867 0.4297 -1.1776 12 1 8.5890 2.6039 -0.1800 13 1 8.4849 0.6047 1.1885 14 6 3.4758 -1.2065 0.0013 15 6 4.1584 -2.5159 0.0020 16 6 5.2615 -2.7403 -0.8247 17 7 5.8736 -3.9063 -0.8208 18 6 5.4645 -4.9040 -0.0492 19 7 6.1380 -6.1155 -0.0844 20 6 7.5465 -5.9464 0.3009 21 6 8.2327 -7.3141 0.3262 22 7 8.1234 -7.9393 -0.9993 23 6 6.7152 -8.1082 -1.3841 24 6 6.0286 -6.7406 -1.4098 25 6 4.3709 -4.7505 0.8006 26 6 3.9216 -5.8923 1.6755 27 6 3.7079 -3.5529 0.8329 28 7 2.1506 -1.1494 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5141 31 1 -0.3633 -0.8902 -0.5134 32 1 1.6347 2.1407 -0.0004 33 1 4.0978 2.1586 0.0001 34 1 6.3008 2.6201 -1.6778 35 1 5.6175 -1.9503 -1.4695 36 1 7.6014 -5.4935 1.2909 37 1 8.0464 -5.3020 -0.4223 38 1 7.7501 -7.9495 1.0689 39 1 9.2845 -7.1887 0.5834 40 1 8.6265 -7.4065 -1.6929 41 1 6.6606 -8.5612 -2.3740 42 1 6.2154 -8.7529 -0.6612 43 1 6.5113 -6.1053 -2.1524 44 1 4.9770 -6.8665 -1.6673 45 1 4.5054 -5.8960 2.5961 46 1 2.8652 -5.7721 1.9156 47 1 4.0694 -6.8344 1.1477 48 1 2.8578 -3.4096 1.4836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239728958.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:23 Heat of formation + Delta-G solvation = 64.215838 kcal Electronic energy + Delta-G solvation = -29278.289416 eV Core-core repulsion = 25525.024915 eV Total energy + Delta-G solvation = -3753.264502 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.40446 -38.90286 -38.03265 -34.62826 -34.28145 -33.14999 -32.08278 -30.98039 -30.97644 -29.25843 -28.00792 -26.76284 -25.45557 -24.29508 -23.38827 -22.59225 -22.16984 -20.91744 -20.30219 -19.92821 -17.59473 -17.26405 -16.29079 -15.64063 -15.37036 -15.20124 -15.11815 -14.66665 -14.48905 -14.20299 -14.04572 -13.81416 -13.41930 -13.22427 -13.00344 -12.77649 -12.46635 -12.41147 -12.29480 -12.21401 -11.97627 -11.83262 -11.58227 -11.55729 -11.51271 -11.31949 -11.27513 -11.06055 -11.05622 -10.98899 -10.68626 -10.01469 -9.52628 -9.31780 -9.12997 -8.58255 -8.53304 -8.35583 -8.20478 -8.04975 -7.44189 -7.03128 -4.64340 1.46623 1.92035 2.49697 2.83607 2.91808 2.96113 3.05218 3.71244 3.77215 4.19828 4.28540 4.40406 4.98358 4.99570 5.12092 5.19512 5.22335 5.26408 5.30107 5.32344 5.49763 5.55089 5.62572 5.71240 5.76184 5.77927 5.92706 5.94226 5.95596 5.98560 6.04682 6.08543 6.18591 6.29191 6.34331 6.43919 6.48242 6.66715 6.69353 6.77807 6.84651 6.87967 6.97997 7.03040 7.05810 7.11878 7.21893 7.52959 7.60630 7.71505 7.77900 8.21926 8.44637 8.49565 8.55522 9.44292 9.83856 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010669 B = 0.003953 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.873641 B = 7082.027614 C = 9136.126148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.006 4.006 3 C -0.141 4.141 4 C -0.125 4.125 5 C 0.087 3.913 6 C -0.439 4.439 7 H 0.087 0.913 8 C 0.076 3.924 9 N -0.781 5.781 10 Si 0.909 3.091 11 H -0.265 1.265 12 H -0.273 1.273 13 H -0.258 1.258 14 C 0.010 3.990 15 C -0.014 4.014 16 C 0.120 3.880 17 N -0.510 5.510 18 C 0.248 3.752 19 N -0.472 5.472 20 C 0.022 3.978 21 C 0.061 3.939 22 N -0.687 5.687 23 C 0.061 3.939 24 C 0.022 3.978 25 C -0.109 4.109 26 C -0.092 4.092 27 C -0.073 4.073 28 N -0.447 5.447 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.287 0.713 35 H 0.165 0.835 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.339 0.661 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.071 0.929 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.784 -10.471 1.879 10.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.149 4.149 3 C -0.161 4.161 4 C -0.151 4.151 5 C 0.082 3.918 6 C -0.468 4.468 7 H 0.105 0.895 8 C -0.144 4.144 9 N -0.404 5.404 10 Si 0.732 3.268 11 H -0.189 1.189 12 H -0.197 1.197 13 H -0.182 1.182 14 C -0.128 4.128 15 C -0.017 4.017 16 C -0.039 4.039 17 N -0.221 5.221 18 C 0.020 3.980 19 N -0.196 5.196 20 C -0.107 4.107 21 C -0.069 4.069 22 N -0.315 5.315 23 C -0.069 4.069 24 C -0.107 4.107 25 C -0.113 4.113 26 C -0.149 4.149 27 C -0.100 4.100 28 N -0.155 5.155 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.145 0.855 34 H 0.098 0.902 35 H 0.182 0.818 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.156 0.844 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.952 -12.141 1.763 12.423 hybrid contribution 0.649 2.970 -0.193 3.046 sum 2.601 -9.171 1.570 9.662 Atomic orbital electron populations 1.20288 0.91420 1.01003 1.00490 1.20261 0.94885 0.88460 1.11257 1.21274 0.95421 0.97212 1.02183 1.21400 0.92634 0.98761 1.02321 1.18300 0.93990 0.90807 0.88684 1.19584 0.91003 1.03772 1.32416 0.89534 1.25996 1.01699 0.94142 0.92567 1.69760 1.39043 1.11011 1.20600 0.86260 0.81276 0.78617 0.80608 1.18945 1.19739 1.18195 1.19211 0.88396 0.90740 1.14436 1.19432 0.94829 0.92696 0.94736 1.22918 0.91853 0.92678 0.96489 1.67645 1.31064 1.01332 1.22063 1.19441 0.94205 0.89080 0.95274 1.60098 1.12893 1.19116 1.27461 1.22819 0.87708 0.98415 1.01717 1.22111 1.00102 0.92843 0.91859 1.60788 1.12325 1.53914 1.04520 1.22108 0.87896 0.95300 1.01588 1.22823 1.02079 0.96395 0.89402 1.20052 0.96092 0.96267 0.98840 1.20503 0.99971 0.96321 0.98102 1.21282 0.99074 0.91605 0.97990 1.66835 1.09460 1.29378 1.09805 0.93105 0.92829 0.92560 0.88176 0.85466 0.90186 0.81794 0.90487 0.93387 0.90092 0.90296 0.84401 0.90311 0.90087 0.93560 0.90511 0.91861 0.92494 0.90974 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.15 36.00 0.37 -0.93 16 2 C -0.01 -0.13 6.79 -82.40 -0.56 -0.69 16 3 C -0.14 -3.11 9.64 -39.84 -0.38 -3.49 16 4 C -0.13 -3.03 8.73 -38.98 -0.34 -3.37 16 5 C 0.09 2.16 5.55 -106.40 -0.59 1.57 16 6 C -0.44 -10.62 6.78 -37.93 -0.26 -10.88 16 7 H 0.09 2.09 6.41 -52.49 -0.34 1.75 16 8 C 0.08 1.75 5.20 -17.32 -0.09 1.66 16 9 N -0.78 -18.35 10.99 55.55 0.61 -17.74 16 10 Si 0.91 17.56 29.59 -169.99 -5.03 12.53 16 11 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 12 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 13 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 14 C 0.01 0.24 6.45 -82.25 -0.53 -0.29 16 15 C -0.01 -0.31 5.27 -104.74 -0.55 -0.86 16 16 C 0.12 2.58 9.00 -17.08 -0.15 2.42 16 17 N -0.51 -10.08 9.60 -12.08 -0.12 -10.20 16 18 C 0.25 4.37 5.31 -155.11 -0.82 3.55 16 19 N -0.47 -6.83 3.70 -173.01 -0.64 -7.47 16 20 C 0.02 0.30 5.41 -3.75 -0.02 0.28 16 21 C 0.06 0.64 6.72 -3.77 -0.03 0.62 16 22 N -0.69 -7.19 6.91 -113.63 -0.79 -7.98 16 23 C 0.06 0.63 6.72 -3.76 -0.03 0.61 16 24 C 0.02 0.29 5.44 -3.77 -0.02 0.27 16 25 C -0.11 -1.88 5.88 -104.69 -0.62 -2.50 16 26 C -0.09 -1.24 9.71 36.00 0.35 -0.89 16 27 C -0.07 -1.42 9.40 -39.28 -0.37 -1.79 16 28 N -0.45 -10.58 10.06 -5.46 -0.05 -10.63 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.13 3.10 6.33 -52.49 -0.33 2.77 16 34 H 0.29 6.13 8.30 -40.82 -0.34 5.80 16 35 H 0.16 3.70 6.75 -52.48 -0.35 3.35 16 36 H 0.08 1.06 8.13 -51.92 -0.42 0.64 16 37 H 0.05 0.72 7.92 -51.93 -0.41 0.31 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.34 3.39 8.89 -39.29 -0.35 3.04 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.68 7.98 -51.93 -0.41 0.26 16 44 H 0.08 1.02 8.13 -51.93 -0.42 0.60 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.71 8.05 -51.93 -0.42 0.29 16 47 H 0.07 0.93 7.64 -51.93 -0.40 0.53 16 48 H 0.13 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 386.01 15.07 5.82 5.82 Total: -1.00 -26.41 386.01 -12.06 -38.47 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -7.22 Total: 11.92 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -4.64 Total: -14.72 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.99 Total: -54.02 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -26.41 -12.06 -38.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239728958.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.687 kcal (2) G-P(sol) polarization free energy of solvation -26.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds