Wall clock time and date at job start Tue Mar 31 2020 21:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.47401 * 2 1 4 4 C 1.34230 * 117.00344 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99378 * 0.02562 * 4 3 2 6 6 C 1.50692 * 120.00048 * 180.02562 * 4 3 2 7 7 N 1.46903 * 109.47274 * 174.23791 * 6 4 3 8 8 C 1.46902 * 110.99362 * 287.88222 * 7 6 4 9 9 C 1.50697 * 109.47197 * 295.55694 * 8 7 6 10 10 H 1.07993 * 120.00365 * 5.24437 * 9 8 7 11 11 C 1.37883 * 119.99853 * 185.24870 * 9 8 7 12 12 N 1.31516 * 120.00049 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00007 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46692 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47229 * 119.99865 * 13 11 9 16 16 H 1.48501 * 109.47061 * 240.00089 * 13 11 9 17 17 C 1.46897 * 111.00168 * 163.92886 * 7 6 4 18 18 C 1.50707 * 109.47031 * 189.99685 * 17 7 6 19 19 C 1.38274 * 119.94909 * 270.02781 * 18 17 7 20 20 C 1.38488 * 120.12064 * 180.02562 * 19 18 17 21 21 F 1.35098 * 119.98957 * 179.97438 * 20 19 18 22 22 C 1.38343 * 120.02768 * 359.94911 * 20 19 18 23 23 C 1.38852 * 119.89806 * 0.02562 * 22 20 19 24 24 N 1.39673 * 120.06193 * 180.02562 * 23 22 20 25 25 C 1.46500 * 119.99775 * 359.97438 * 24 23 22 26 26 C 1.46493 * 119.99902 * 180.02562 * 24 23 22 27 27 C 1.38088 * 119.94751 * 89.99942 * 18 17 7 28 28 H 1.09007 * 109.47102 * 59.99668 * 1 2 3 29 29 H 1.08999 * 109.47602 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46991 * 300.00227 * 1 2 3 31 31 H 1.08999 * 109.47085 * 240.00267 * 2 1 3 32 32 H 1.09002 * 109.47209 * 119.99862 * 2 1 3 33 33 H 1.08997 * 109.47849 * 54.23135 * 6 4 3 34 34 H 1.09007 * 109.46679 * 294.23238 * 6 4 3 35 35 H 1.09008 * 109.47486 * 55.55997 * 8 7 6 36 36 H 1.09003 * 109.46899 * 175.55583 * 8 7 6 37 37 H 0.97001 * 120.00049 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.47242 * 70.00104 * 17 7 6 39 39 H 1.08990 * 109.47316 * 309.99349 * 17 7 6 40 40 H 1.07993 * 119.93905 * 359.96901 * 19 18 17 41 41 H 1.08001 * 120.05630 * 180.30414 * 22 20 19 42 42 H 1.09000 * 109.47267 * 90.00073 * 25 24 23 43 43 H 1.09008 * 109.47139 * 210.00358 * 25 24 23 44 44 H 1.08995 * 109.47399 * 330.00205 * 25 24 23 45 45 H 1.08999 * 109.47381 * 90.00374 * 26 24 23 46 46 H 1.09002 * 109.46998 * 209.99546 * 26 24 23 47 47 H 1.09000 * 109.47561 * 329.99831 * 26 24 23 48 48 H 1.07994 * 120.01841 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 7 5.3812 2.8631 0.1407 8 6 5.7602 2.4659 1.5033 9 6 5.3269 3.5321 2.4762 10 1 4.7467 4.3749 2.1307 11 6 5.6712 3.4316 3.8075 12 7 6.3773 2.4050 4.2285 13 14 5.1334 4.7528 5.0137 14 1 4.3550 5.7927 4.2940 15 1 4.2870 4.1432 6.0707 16 1 6.3311 5.3730 5.6349 17 6 6.0110 4.1372 -0.2307 18 6 7.5046 3.9541 -0.3130 19 6 8.2880 4.1583 0.8080 20 6 9.6609 3.9916 0.7362 21 9 10.4238 4.1923 1.8329 22 6 10.2515 3.6190 -0.4581 23 6 9.4658 3.4132 -1.5842 24 7 10.0584 3.0364 -2.7916 25 6 11.5105 2.8586 -2.8707 26 6 9.2282 2.8202 -3.9790 27 6 8.0887 3.5821 -1.5077 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5043 3.5025 0.8349 34 1 3.6701 3.4345 -0.9360 35 1 5.2734 1.5239 1.7559 36 1 6.8418 2.3420 1.5580 37 1 6.6192 2.3341 5.1651 38 1 5.7783 4.8905 0.5219 39 1 5.6309 4.4617 -1.1992 40 1 7.8284 4.4493 1.7409 41 1 11.3217 3.4840 -0.5133 42 1 11.7634 1.8251 -2.6342 43 1 11.8510 3.0945 -3.8790 44 1 11.9974 3.5240 -2.1578 45 1 9.1303 3.7560 -4.5293 46 1 9.6956 2.0705 -4.6175 47 1 8.2410 2.4731 -3.6738 48 1 7.4756 3.4229 -2.3824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249958272.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:09 Heat of formation + Delta-G solvation = -84.569078 kcal Electronic energy + Delta-G solvation = -30092.874324 eV Core-core repulsion = 25870.096049 eV Total energy + Delta-G solvation = -4222.778276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.28281 -39.91838 -39.30038 -37.25358 -36.03382 -35.16699 -32.52444 -31.64468 -31.03517 -29.65296 -28.37646 -27.83459 -26.57293 -24.70674 -24.31775 -23.08879 -21.88834 -21.01318 -20.24469 -19.52413 -17.46803 -16.93657 -16.51686 -16.23917 -16.18168 -15.71249 -15.41369 -15.23274 -14.94152 -14.82127 -14.73421 -14.46120 -14.30410 -14.04859 -13.48732 -13.27369 -12.84431 -12.65183 -12.63508 -12.44386 -12.34974 -12.18827 -11.91658 -11.88814 -11.64341 -11.39637 -11.27328 -11.17579 -10.97563 -10.94769 -10.80630 -10.55239 -10.39598 -10.16347 -9.97364 -9.71939 -9.62500 -9.31371 -8.42404 -8.20630 -7.30782 -7.02273 -6.02539 -4.13088 1.71816 1.97324 2.89773 3.08863 3.20013 3.26575 3.35601 3.36355 4.15531 4.39238 4.82343 4.96815 5.03304 5.05586 5.09738 5.17831 5.24509 5.27123 5.29907 5.33579 5.42616 5.48379 5.55231 5.62433 5.68045 5.72751 5.76896 5.79904 5.84940 5.87725 5.99203 6.03229 6.14247 6.16186 6.34659 6.38239 6.66120 6.81758 6.91433 7.14682 7.24012 7.27422 7.38498 7.56321 7.72831 7.88804 7.94492 8.13780 8.24140 8.47883 8.97102 9.53316 11.02317 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008220 B = 0.004327 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.573665 B = 6470.120911 C = 9226.234116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.369 6.369 4 C 0.465 3.535 5 O -0.487 6.487 6 C 0.068 3.932 7 N -0.522 5.522 8 C 0.181 3.819 9 C -0.558 4.558 10 H 0.058 0.942 11 C 0.071 3.929 12 N -0.880 5.880 13 Si 0.883 3.117 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.282 1.282 17 C 0.098 3.902 18 C 0.012 3.988 19 C -0.172 4.172 20 C 0.135 3.865 21 F -0.144 7.144 22 C -0.240 4.240 23 C 0.225 3.775 24 N -0.640 5.640 25 C 0.096 3.904 26 C 0.096 3.904 27 C -0.187 4.187 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.034 0.966 36 H 0.048 0.952 37 H 0.262 0.738 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.146 0.854 41 H 0.125 0.875 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.044 0.956 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 1.261 -15.023 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.307 3.693 5 O -0.371 6.371 6 C -0.062 4.062 7 N -0.247 5.247 8 C 0.056 3.944 9 C -0.597 4.597 10 H 0.076 0.924 11 C -0.133 4.133 12 N -0.518 5.518 13 Si 0.710 3.290 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.208 1.208 17 C -0.029 4.029 18 C 0.010 3.990 19 C -0.193 4.193 20 C 0.115 3.885 21 F -0.122 7.122 22 C -0.264 4.264 23 C 0.125 3.875 24 N -0.354 5.354 25 C -0.047 4.047 26 C -0.047 4.047 27 C -0.209 4.209 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.164 0.836 41 H 0.143 0.857 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.446 0.425 -15.316 15.328 hybrid contribution -0.273 0.949 1.681 1.950 sum 0.173 1.375 -13.635 13.705 Atomic orbital electron populations 1.21781 0.93197 1.02468 1.03278 1.22873 0.94808 0.81169 1.02323 1.86479 1.25629 1.31555 1.84999 1.23810 0.79742 0.93303 0.72468 1.90637 1.60008 1.42903 1.43588 1.21424 0.91557 0.89765 1.03408 1.62275 1.03649 1.27821 1.30938 1.19953 0.98319 0.95824 0.80329 1.21706 1.35512 1.08606 0.93854 0.92392 1.24916 0.94754 0.95393 0.98258 1.69966 1.37036 1.28961 1.15836 0.86688 0.78578 0.82104 0.81587 1.19722 1.21016 1.20832 1.20910 0.89619 0.92372 0.99986 1.19233 0.95038 0.93352 0.91346 1.21163 0.91107 1.06107 1.00904 1.17356 0.88983 0.99843 0.82283 1.91461 1.75712 1.92563 1.52498 1.20362 0.99857 1.14211 0.91943 1.17340 0.91615 0.93507 0.85042 1.46158 1.05726 1.75722 1.07778 1.21573 0.80451 1.00886 1.01832 1.21588 0.96049 1.00180 0.86855 1.20514 0.92049 1.09236 0.99131 0.91777 0.90704 0.91535 0.91740 0.91424 0.89424 0.88709 0.94769 0.93438 0.92775 0.91885 0.91633 0.83583 0.85691 0.93638 0.91923 0.91437 0.93718 0.91975 0.90919 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.29 37.16 0.38 -1.14 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.22 10.22 -39.26 -0.40 -6.62 16 4 C 0.47 9.06 7.54 36.00 0.27 9.33 16 5 O -0.49 -11.05 14.90 -18.75 -0.28 -11.33 16 6 C 0.07 1.23 5.42 -4.98 -0.03 1.21 16 7 N -0.52 -10.83 4.29 -238.96 -1.03 -11.86 16 8 C 0.18 4.60 4.39 -4.98 -0.02 4.58 16 9 C -0.56 -14.48 6.73 -34.44 -0.23 -14.71 16 10 H 0.06 1.45 5.97 -52.49 -0.31 1.13 16 11 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 12 N -0.88 -25.75 13.29 55.43 0.74 -25.02 16 13 Si 0.88 20.92 29.54 -169.99 -5.02 15.90 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.10 1.78 4.90 -4.97 -0.02 1.75 16 18 C 0.01 0.22 4.88 -104.66 -0.51 -0.29 16 19 C -0.17 -3.50 7.95 -39.48 -0.31 -3.82 16 20 C 0.14 2.60 7.30 -39.45 -0.29 2.31 16 21 F -0.14 -2.87 17.27 2.25 0.04 -2.83 16 22 C -0.24 -4.00 9.18 -39.32 -0.36 -4.36 16 23 C 0.23 3.54 6.55 -83.79 -0.55 2.99 16 24 N -0.64 -8.09 3.41 -187.56 -0.64 -8.73 16 25 C 0.10 0.95 10.19 59.85 0.61 1.56 16 26 C 0.10 0.96 10.19 59.84 0.61 1.57 16 27 C -0.19 -3.06 8.86 -39.37 -0.35 -3.41 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.07 1.01 8.13 -51.93 -0.42 0.58 16 33 H 0.09 1.67 6.40 -51.93 -0.33 1.34 16 34 H 0.09 1.37 7.81 -51.92 -0.41 0.96 16 35 H 0.03 0.99 6.58 -51.92 -0.34 0.65 16 36 H 0.05 1.33 6.20 -51.93 -0.32 1.01 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.06 1.21 6.31 -51.93 -0.33 0.88 16 39 H 0.07 0.97 7.80 -51.93 -0.41 0.56 16 40 H 0.15 3.34 7.42 -52.49 -0.39 2.95 16 41 H 0.13 1.81 6.14 -52.49 -0.32 1.49 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.48 8.07 -51.92 -0.42 0.06 16 44 H 0.07 0.66 6.20 -51.93 -0.32 0.34 16 45 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 47 H 0.07 0.77 6.19 -51.93 -0.32 0.45 16 48 H 0.12 1.78 6.14 -52.49 -0.32 1.46 16 LS Contribution 390.83 15.07 5.89 5.89 Total: -1.00 -32.24 390.83 -8.43 -40.67 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.06 Total: 3.41 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.67 Total: 0.51 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -0.93 Total: -45.61 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.68 Total: -17.95 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.24 -8.43 -40.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249958272.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.896 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds