Wall clock time and date at job start Tue Mar 31 2020 21:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.47401 * 2 1 4 4 C 1.34230 * 117.00344 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99378 * 0.02562 * 4 3 2 6 6 C 1.50692 * 120.00048 * 180.02562 * 4 3 2 7 7 N 1.46903 * 109.47274 * 174.23791 * 6 4 3 8 8 C 1.46902 * 110.99362 * 287.88222 * 7 6 4 9 9 C 1.50697 * 109.47197 * 295.55694 * 8 7 6 10 10 H 1.07993 * 120.00365 * 5.24437 * 9 8 7 11 11 C 1.37883 * 119.99853 * 185.24870 * 9 8 7 12 12 N 1.31516 * 120.00049 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00007 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46692 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47229 * 119.99865 * 13 11 9 16 16 H 1.48501 * 109.47061 * 240.00089 * 13 11 9 17 17 C 1.46897 * 111.00168 * 163.92886 * 7 6 4 18 18 C 1.50707 * 109.47031 * 189.99685 * 17 7 6 19 19 C 1.38274 * 119.94909 * 270.02781 * 18 17 7 20 20 C 1.38488 * 120.12064 * 180.02562 * 19 18 17 21 21 F 1.35098 * 119.98957 * 179.97438 * 20 19 18 22 22 C 1.38343 * 120.02768 * 359.94911 * 20 19 18 23 23 C 1.38852 * 119.89806 * 0.02562 * 22 20 19 24 24 N 1.39673 * 120.06193 * 180.02562 * 23 22 20 25 25 C 1.46500 * 119.99775 * 359.97438 * 24 23 22 26 26 C 1.46493 * 119.99902 * 180.02562 * 24 23 22 27 27 C 1.38088 * 119.94751 * 89.99942 * 18 17 7 28 28 H 1.09007 * 109.47102 * 59.99668 * 1 2 3 29 29 H 1.08999 * 109.47602 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46991 * 300.00227 * 1 2 3 31 31 H 1.08999 * 109.47085 * 240.00267 * 2 1 3 32 32 H 1.09002 * 109.47209 * 119.99862 * 2 1 3 33 33 H 1.08997 * 109.47849 * 54.23135 * 6 4 3 34 34 H 1.09007 * 109.46679 * 294.23238 * 6 4 3 35 35 H 1.09008 * 109.47486 * 55.55997 * 8 7 6 36 36 H 1.09003 * 109.46899 * 175.55583 * 8 7 6 37 37 H 0.97001 * 120.00049 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.47242 * 70.00104 * 17 7 6 39 39 H 1.08990 * 109.47316 * 309.99349 * 17 7 6 40 40 H 1.07993 * 119.93905 * 359.96901 * 19 18 17 41 41 H 1.08001 * 120.05630 * 180.30414 * 22 20 19 42 42 H 1.09000 * 109.47267 * 90.00073 * 25 24 23 43 43 H 1.09008 * 109.47139 * 210.00358 * 25 24 23 44 44 H 1.08995 * 109.47399 * 330.00205 * 25 24 23 45 45 H 1.08999 * 109.47381 * 90.00374 * 26 24 23 46 46 H 1.09002 * 109.46998 * 209.99546 * 26 24 23 47 47 H 1.09000 * 109.47561 * 329.99831 * 26 24 23 48 48 H 1.07994 * 120.01841 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 7 5.3812 2.8631 0.1407 8 6 5.7602 2.4659 1.5033 9 6 5.3269 3.5321 2.4762 10 1 4.7467 4.3749 2.1307 11 6 5.6712 3.4316 3.8075 12 7 6.3773 2.4050 4.2285 13 14 5.1334 4.7528 5.0137 14 1 4.3550 5.7927 4.2940 15 1 4.2870 4.1432 6.0707 16 1 6.3311 5.3730 5.6349 17 6 6.0110 4.1372 -0.2307 18 6 7.5046 3.9541 -0.3130 19 6 8.2880 4.1583 0.8080 20 6 9.6609 3.9916 0.7362 21 9 10.4238 4.1923 1.8329 22 6 10.2515 3.6190 -0.4581 23 6 9.4658 3.4132 -1.5842 24 7 10.0584 3.0364 -2.7916 25 6 11.5105 2.8586 -2.8707 26 6 9.2282 2.8202 -3.9790 27 6 8.0887 3.5821 -1.5077 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5043 3.5025 0.8349 34 1 3.6701 3.4345 -0.9360 35 1 5.2734 1.5239 1.7559 36 1 6.8418 2.3420 1.5580 37 1 6.6192 2.3341 5.1651 38 1 5.7783 4.8905 0.5219 39 1 5.6309 4.4617 -1.1992 40 1 7.8284 4.4493 1.7409 41 1 11.3217 3.4840 -0.5133 42 1 11.7634 1.8251 -2.6342 43 1 11.8510 3.0945 -3.8790 44 1 11.9974 3.5240 -2.1578 45 1 9.1303 3.7560 -4.5293 46 1 9.6956 2.0705 -4.6175 47 1 8.2410 2.4731 -3.6738 48 1 7.4756 3.4229 -2.3824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249958272.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:08 Heat of formation + Delta-G solvation = -104.033515 kcal Electronic energy + Delta-G solvation = -30093.718366 eV Core-core repulsion = 25870.096049 eV Total energy + Delta-G solvation = -4223.622317 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.81797 -41.40960 -40.59746 -38.70706 -37.40495 -36.56157 -34.56759 -32.78295 -32.32938 -30.89864 -29.64670 -29.37656 -28.03273 -26.14821 -25.67546 -24.40381 -23.31133 -22.39664 -21.60204 -21.07272 -19.02413 -18.37255 -18.21184 -17.65268 -17.52639 -17.12962 -16.91200 -16.64554 -16.56083 -16.23160 -16.02497 -15.78073 -15.64972 -15.41069 -14.91500 -14.79647 -14.19540 -14.02180 -13.85023 -13.54749 -13.37041 -13.27358 -13.17953 -13.01966 -12.94795 -12.86478 -12.77664 -12.56536 -12.53825 -12.43747 -12.40681 -12.21988 -12.04896 -11.73221 -11.62813 -11.44425 -11.24655 -10.62251 -10.54370 -9.60455 -9.03512 -8.19503 -8.10808 -6.30175 0.33448 0.58043 1.36438 1.37762 1.38680 1.48716 1.75813 2.21415 2.38491 2.76739 3.15504 3.44859 3.54197 3.83055 3.94696 4.03199 4.15897 4.16291 4.21535 4.29120 4.36468 4.38641 4.43599 4.51655 4.56788 4.59696 4.65716 4.81607 4.86518 4.88867 4.89780 4.93319 4.95929 5.00167 5.07861 5.17640 5.25436 5.31019 5.40460 5.42629 5.55853 5.77552 5.82425 5.90662 6.00906 6.20930 6.37792 6.40217 6.52419 6.90370 6.98367 7.40784 8.92000 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008220 B = 0.004327 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.573665 B = 6470.120911 C = 9226.234116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.465 3.535 5 O -0.528 6.528 6 C 0.066 3.934 7 N -0.527 5.527 8 C 0.205 3.795 9 C -0.548 4.548 10 H 0.071 0.929 11 C 0.014 3.986 12 N -0.926 5.926 13 Si 0.948 3.052 14 H -0.254 1.254 15 H -0.284 1.284 16 H -0.286 1.286 17 C 0.101 3.899 18 C 0.002 3.998 19 C -0.201 4.201 20 C 0.114 3.886 21 F -0.156 7.156 22 C -0.240 4.240 23 C 0.232 3.768 24 N -0.639 5.639 25 C 0.088 3.912 26 C 0.089 3.911 27 C -0.184 4.184 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.145 0.855 35 H -0.009 1.009 36 H 0.013 0.987 37 H 0.261 0.739 38 H 0.048 0.952 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.146 0.854 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.127 2.266 -18.244 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.308 3.692 5 O -0.416 6.416 6 C -0.062 4.062 7 N -0.251 5.251 8 C 0.079 3.921 9 C -0.587 4.587 10 H 0.089 0.911 11 C -0.185 4.185 12 N -0.565 5.565 13 Si 0.773 3.227 14 H -0.178 1.178 15 H -0.210 1.210 16 H -0.212 1.212 17 C -0.026 4.026 18 C 0.000 4.000 19 C -0.223 4.223 20 C 0.094 3.906 21 F -0.135 7.135 22 C -0.264 4.264 23 C 0.129 3.871 24 N -0.350 5.350 25 C -0.055 4.055 26 C -0.053 4.053 27 C -0.206 4.206 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.163 0.837 35 H 0.009 0.991 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.164 0.836 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.582 1.448 -18.596 18.661 hybrid contribution 0.065 0.556 2.509 2.570 sum -0.518 2.003 -16.087 16.219 Atomic orbital electron populations 1.21798 0.89829 1.04344 1.03800 1.23221 0.97394 0.79675 1.01848 1.86474 1.24072 1.33357 1.84294 1.24113 0.80342 0.93365 0.71366 1.90623 1.61110 1.44200 1.45673 1.21594 0.89606 0.89427 1.05614 1.62097 1.05656 1.29717 1.27628 1.19392 0.95594 0.93940 0.83200 1.21973 1.34281 1.08538 0.93876 0.91132 1.25761 0.94954 0.97382 1.00406 1.70121 1.39048 1.31342 1.16033 0.85653 0.78019 0.79744 0.79236 1.17781 1.20959 1.21203 1.21018 0.89443 0.90463 1.01676 1.19333 0.95220 0.93851 0.91582 1.20945 0.92005 1.09012 1.00310 1.17610 0.88780 1.01165 0.83023 1.91414 1.75875 1.92861 1.53369 1.20526 1.01033 1.13629 0.91177 1.17472 0.91517 0.92088 0.86044 1.46507 1.07216 1.74106 1.07201 1.21801 0.78766 1.01158 1.03741 1.21820 0.95591 1.01834 0.86070 1.20727 0.92731 1.08229 0.98954 0.90459 0.88153 0.91739 0.91127 0.93158 0.90093 0.83725 0.99131 0.96863 0.93054 0.93356 0.87110 0.87457 0.83637 0.93296 0.88922 0.91508 0.91965 0.89653 0.91572 0.83326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 10.29 71.98 0.74 -1.82 16 2 C 0.05 1.43 6.19 71.98 0.45 1.87 16 3 O -0.36 -12.01 10.22 -51.42 -0.53 -12.53 16 4 C 0.46 18.05 7.54 71.23 0.54 18.59 16 5 O -0.53 -24.61 14.90 21.97 0.33 -24.29 16 6 C 0.07 2.33 5.42 85.55 0.46 2.80 16 7 N -0.53 -21.91 4.29 -909.94 -3.91 -25.82 16 8 C 0.21 10.96 4.39 85.56 0.38 11.34 16 9 C -0.55 -29.36 6.73 25.60 0.17 -29.19 16 10 H 0.07 3.53 5.97 -2.91 -0.02 3.52 16 11 C 0.01 0.82 5.46 84.66 0.46 1.28 16 12 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 13 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 14 H -0.25 -10.97 7.11 99.48 0.71 -10.26 16 15 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 16 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 17 C 0.10 3.55 4.90 85.56 0.42 3.97 16 18 C 0.00 0.06 4.88 -19.89 -0.10 -0.04 16 19 C -0.20 -8.69 7.95 22.34 0.18 -8.52 16 20 C 0.11 4.59 7.30 22.35 0.16 4.76 16 21 F -0.16 -6.64 17.27 44.97 0.78 -5.86 16 22 C -0.24 -7.93 9.18 22.44 0.21 -7.72 16 23 C 0.23 6.92 6.55 38.21 0.25 7.17 16 24 N -0.64 -14.14 3.41 -747.31 -2.55 -16.68 16 25 C 0.09 1.44 10.19 127.77 1.30 2.75 16 26 C 0.09 1.42 10.19 127.77 1.30 2.73 16 27 C -0.18 -5.73 8.86 22.40 0.20 -5.53 16 28 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 32 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 33 H 0.08 3.01 6.40 -2.39 -0.02 2.99 16 34 H 0.15 3.63 7.81 -2.38 -0.02 3.61 16 35 H -0.01 -0.58 6.58 -2.38 -0.02 -0.60 16 36 H 0.01 0.80 6.20 -2.39 -0.01 0.78 16 37 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.05 1.85 6.31 -2.39 -0.02 1.83 16 39 H 0.11 2.89 7.80 -2.39 -0.02 2.87 16 40 H 0.11 5.38 7.42 -2.91 -0.02 5.35 16 41 H 0.15 4.07 6.14 -2.91 -0.02 4.05 16 42 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.09 1.01 8.07 -2.38 -0.02 0.99 16 44 H 0.07 1.13 6.20 -2.39 -0.01 1.11 16 45 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.08 1.01 8.07 -2.39 -0.02 0.99 16 47 H 0.07 1.17 6.19 -2.39 -0.01 1.15 16 48 H 0.15 3.82 6.14 -2.91 -0.02 3.80 16 Total: -1.00 -75.65 390.83 4.53 -71.13 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.97 Total: 20.30 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 7.12 Total: 4.43 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -6.17 Total: -99.30 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.20 Total: -36.82 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.78 Total: -5.86 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -75.65 4.53 -71.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249958272.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.908 kcal (2) G-P(sol) polarization free energy of solvation -75.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds