Wall clock time and date at job start Tue Mar 31 2020 22:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30372 * 125.96473 * 2 1 4 4 N 1.39915 * 109.02146 * 179.97438 * 3 2 1 5 5 C 1.46501 * 125.74635 * 179.97438 * 4 3 2 6 6 C 1.34420 * 108.51272 * 0.22292 * 4 3 2 7 7 F 1.35106 * 126.34201 * 179.75475 * 6 4 3 8 8 C 1.38504 * 107.31206 * 359.64167 * 6 4 3 9 9 C 1.47166 * 126.45820 * 180.13386 * 8 6 4 10 10 O 1.21634 * 119.99867 * 270.26566 * 9 8 6 11 11 N 1.34770 * 119.99973 * 90.26472 * 9 8 6 12 12 C 1.46927 * 120.63161 * 355.05314 * 11 9 8 13 13 C 1.53196 * 108.77332 * 233.58742 * 12 11 9 14 14 C 1.53038 * 109.31189 * 305.36324 * 13 12 11 15 15 C 1.53038 * 109.53933 * 61.36706 * 14 13 12 16 16 C 1.46929 * 120.62924 * 174.77291 * 11 9 8 17 17 H 1.08998 * 109.58806 * 246.19787 * 16 11 9 18 18 C 1.52998 * 109.58866 * 6.62891 * 16 11 9 19 19 H 1.09002 * 109.46762 * 306.07979 * 18 16 11 20 20 C 1.53002 * 109.47105 * 186.07854 * 18 16 11 21 21 N 1.46498 * 109.47479 * 66.07647 * 18 16 11 22 22 C 1.36934 * 120.00311 * 205.00677 * 21 18 16 23 23 H 1.07999 * 119.99625 * 359.97438 * 22 21 18 24 24 C 1.38814 * 120.00293 * 180.02562 * 22 21 18 25 25 N 1.31620 * 119.99497 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99959 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47107 * 90.00244 * 26 24 22 28 28 H 1.48503 * 109.47022 * 209.99673 * 26 24 22 29 29 H 1.48496 * 109.47176 * 329.99679 * 26 24 22 30 30 H 1.09005 * 109.47241 * 90.03145 * 1 2 3 31 31 H 1.09001 * 109.47291 * 210.02932 * 1 2 3 32 32 H 1.08999 * 109.47412 * 330.02846 * 1 2 3 33 33 H 1.08999 * 109.46779 * 90.02188 * 5 4 3 34 34 H 1.08996 * 109.47091 * 210.02500 * 5 4 3 35 35 H 1.09003 * 109.46922 * 330.02004 * 5 4 3 36 36 H 1.09004 * 109.58476 * 353.37023 * 12 11 9 37 37 H 1.09001 * 109.58717 * 113.65641 * 12 11 9 38 38 H 1.09001 * 109.49867 * 65.31923 * 13 12 11 39 39 H 1.09001 * 109.49541 * 185.38080 * 13 12 11 40 40 H 1.09002 * 109.45918 * 181.38928 * 14 13 12 41 41 H 1.09001 * 109.45998 * 301.35899 * 14 13 12 42 42 H 1.08998 * 109.49438 * 58.58649 * 15 14 13 43 43 H 1.09005 * 109.49896 * 178.64777 * 15 14 13 44 44 H 1.08991 * 109.46771 * 304.93701 * 20 18 16 45 45 H 1.09004 * 109.46949 * 64.93823 * 20 18 16 46 46 H 1.09001 * 109.46810 * 184.93544 * 20 18 16 47 47 H 0.97004 * 119.99560 * 24.99500 * 21 18 16 48 48 H 0.96997 * 119.99318 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0552 0.0000 4 7 3.6111 0.6475 0.0006 5 6 4.7763 1.5354 0.0002 6 6 3.6479 -0.6962 -0.0040 7 9 4.7577 -1.4667 -0.0097 8 6 2.3374 -1.1445 0.0008 9 6 1.8930 -2.5474 0.0010 10 8 1.7098 -3.1275 -1.0523 11 7 1.6890 -3.1894 1.1683 12 6 2.0088 -2.5389 2.4463 13 6 2.9361 -3.4573 3.2486 14 6 2.2851 -4.8351 3.3902 15 6 2.0791 -5.4488 2.0035 16 6 1.1369 -4.5509 1.1873 17 1 0.1494 -4.5384 1.6483 18 6 1.0315 -5.0817 -0.2438 19 1 0.4649 -4.3765 -0.8520 20 6 0.3182 -6.4352 -0.2345 21 7 2.3750 -5.2415 -0.8057 22 6 2.5593 -5.2001 -2.1619 23 1 1.7142 -5.0499 -2.8174 24 6 3.8323 -5.3521 -2.6944 25 7 4.8621 -5.5356 -1.8955 26 14 4.0836 -5.2962 -4.5445 27 1 4.3441 -3.8966 -4.9666 28 1 5.2430 -6.1481 -4.9125 29 1 2.8636 -5.7997 -5.2252 30 1 -0.3634 -0.0006 -1.0277 31 1 -0.3634 -0.8897 0.5143 32 1 -0.3634 0.8902 0.5134 33 1 5.0652 1.7560 1.0278 34 1 5.6046 1.0477 -0.5134 35 1 4.5258 2.4633 -0.5140 36 1 2.5091 -1.5890 2.2577 37 1 1.0906 -2.3633 3.0068 38 1 3.8888 -3.5567 2.7284 39 1 3.1043 -3.0305 4.2374 40 1 2.9318 -5.4832 3.9817 41 1 1.3210 -4.7318 3.8882 42 1 3.0399 -5.5295 1.4950 43 1 1.6375 -6.4401 2.1062 44 1 0.8361 -7.1141 0.4428 45 1 -0.7103 -6.3016 0.1011 46 1 0.3205 -6.8540 -1.2408 47 1 3.1339 -5.3766 -0.2169 48 1 5.7516 -5.6415 -2.2675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265091759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:37 Heat of formation + Delta-G solvation = 56.699151 kcal Electronic energy + Delta-G solvation = -32524.755273 eV Core-core repulsion = 28340.395599 eV Total energy + Delta-G solvation = -4184.359674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.93215 -41.25241 -39.74684 -36.66768 -35.16786 -34.00451 -32.30802 -32.06406 -30.20400 -29.54925 -29.31958 -27.95016 -26.22126 -24.69098 -23.81132 -23.13743 -21.99419 -20.69993 -20.27274 -19.81762 -18.59225 -17.34573 -16.85061 -16.65300 -16.17577 -15.75583 -15.41994 -14.55462 -14.50768 -14.34050 -14.08332 -14.02189 -13.86340 -13.61338 -13.42432 -13.35719 -13.21778 -12.92793 -12.59130 -12.49133 -12.40206 -12.11107 -12.03549 -12.01214 -11.75571 -11.28938 -11.03065 -10.76945 -10.69660 -10.60470 -10.55485 -10.44392 -10.27579 -10.00957 -9.69001 -9.27898 -9.23286 -8.65077 -8.57884 -8.08686 -7.80423 -6.48349 -5.41435 -2.62366 1.55068 2.03692 2.43080 3.30862 3.62161 3.63727 3.67279 3.68385 4.04284 4.46496 4.84575 4.88942 4.94747 4.98461 5.05420 5.11783 5.14390 5.21960 5.32257 5.45259 5.52028 5.58730 5.61070 5.66901 5.77496 5.78324 5.84130 5.86340 5.91329 5.98945 6.09453 6.19627 6.24675 6.34280 6.37835 6.45094 6.52050 6.59837 6.68967 6.83462 6.99014 7.11142 7.15126 7.47482 7.49463 8.07623 8.09354 8.77134 9.09672 9.88913 10.46440 10.82452 11.83120 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.008996 B = 0.006258 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.685791 B = 4473.303469 C = 5955.117058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.124 3.876 3 N -0.281 5.281 4 N -0.382 5.382 5 C 0.096 3.904 6 C 0.290 3.710 7 F -0.080 7.080 8 C -0.269 4.269 9 C 0.571 3.429 10 O -0.436 6.436 11 N -0.604 5.604 12 C 0.119 3.881 13 C -0.135 4.135 14 C -0.115 4.115 15 C -0.134 4.134 16 C 0.148 3.852 17 H 0.063 0.937 18 C 0.169 3.831 19 H 0.081 0.919 20 C -0.171 4.171 21 N -0.702 5.702 22 C -0.171 4.171 23 H 0.064 0.936 24 C -0.031 4.031 25 N -0.947 5.947 26 Si 0.896 3.104 27 H -0.298 1.298 28 H -0.298 1.298 29 H -0.286 1.286 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.042 0.958 45 H 0.032 0.968 46 H 0.055 0.945 47 H 0.378 0.622 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.206 12.075 13.180 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.042 4.042 3 N -0.104 5.104 4 N -0.168 5.168 5 C -0.045 4.045 6 C 0.144 3.856 7 F -0.059 7.059 8 C -0.285 4.285 9 C 0.355 3.645 10 O -0.303 6.303 11 N -0.340 5.340 12 C -0.005 4.005 13 C -0.174 4.174 14 C -0.153 4.153 15 C -0.172 4.172 16 C 0.044 3.956 17 H 0.081 0.919 18 C 0.059 3.941 19 H 0.099 0.901 20 C -0.231 4.231 21 N -0.343 5.343 22 C -0.303 4.303 23 H 0.082 0.918 24 C -0.224 4.224 25 N -0.599 5.599 26 Si 0.729 3.271 27 H -0.227 1.227 28 H -0.225 1.225 29 H -0.212 1.212 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.051 0.949 46 H 0.074 0.926 47 H 0.213 0.787 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.109 13.081 12.350 18.999 hybrid contribution 1.300 -0.869 -0.780 1.747 sum -4.810 12.212 11.570 17.497 Atomic orbital electron populations 1.20247 0.85566 1.03514 1.03835 1.22135 0.96984 0.88353 0.96776 1.77180 0.84304 1.21392 1.27541 1.48578 1.06965 1.02754 1.58491 1.21981 0.84072 0.94612 1.03859 1.17941 0.84037 0.81466 1.02183 1.91737 1.49321 1.71324 1.93545 1.20005 0.89996 0.96440 1.22056 1.17052 0.79795 0.83380 0.84319 1.91120 1.45193 1.63426 1.30603 1.47759 1.65743 1.15554 1.04958 1.21465 0.98202 0.95803 0.85011 1.21912 0.99732 0.96146 0.99578 1.21487 1.00152 0.96053 0.97562 1.22073 1.01836 0.98483 0.94822 1.21679 0.94741 0.80446 0.98719 0.91879 1.20701 0.90211 0.93385 0.89778 0.90141 1.22602 0.98006 1.00844 1.01674 1.42415 1.02180 1.85368 1.04377 1.19070 0.92304 1.35669 0.83287 0.91800 1.24535 0.95893 1.05454 0.96506 1.69641 0.98167 1.59725 1.32385 0.86302 0.76710 0.76936 0.87107 1.22651 1.22498 1.21248 0.89682 0.90022 0.90424 0.90185 0.89167 0.88522 0.91049 0.92254 0.91277 0.91672 0.92224 0.92427 0.90119 0.91126 0.93844 0.94918 0.92557 0.78653 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.28 36.00 0.37 -0.46 16 2 C 0.12 1.86 7.26 -82.01 -0.60 1.26 16 3 N -0.28 -4.18 12.49 33.91 0.42 -3.75 16 4 N -0.38 -5.53 3.98 -67.94 -0.27 -5.80 16 5 C 0.10 0.90 11.43 59.85 0.68 1.59 16 6 C 0.29 5.07 8.43 -16.32 -0.14 4.93 16 7 F -0.08 -1.56 17.31 2.25 0.04 -1.52 16 8 C -0.27 -4.77 3.98 -104.97 -0.42 -5.19 16 9 C 0.57 11.32 6.93 -12.64 -0.09 11.23 16 10 O -0.44 -10.57 9.83 5.25 0.05 -10.52 16 11 N -0.60 -10.10 2.96 -166.31 -0.49 -10.59 16 12 C 0.12 1.58 6.32 -3.71 -0.02 1.56 16 13 C -0.14 -1.72 6.08 -26.61 -0.16 -1.88 16 14 C -0.11 -1.45 5.88 -26.69 -0.16 -1.60 16 15 C -0.13 -2.12 4.89 -26.39 -0.13 -2.25 16 16 C 0.15 2.47 2.73 -67.37 -0.18 2.29 16 17 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 18 C 0.17 3.50 1.88 -67.93 -0.13 3.37 16 19 H 0.08 1.83 5.90 -52.21 -0.31 1.52 16 20 C -0.17 -3.17 9.39 37.16 0.35 -2.82 16 21 N -0.70 -17.96 3.62 -53.43 -0.19 -18.15 16 22 C -0.17 -5.00 7.98 -15.06 -0.12 -5.12 16 23 H 0.06 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.03 -0.95 5.50 -17.43 -0.10 -1.04 16 25 N -0.95 -30.05 13.06 55.49 0.72 -29.32 16 26 Si 0.90 24.42 29.55 -169.99 -5.02 19.40 16 27 H -0.30 -8.25 7.11 56.52 0.40 -7.85 16 28 H -0.30 -8.14 7.11 56.52 0.40 -7.74 16 29 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.97 6.18 -51.93 -0.32 0.65 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.60 6.05 -51.93 -0.31 1.28 16 43 H 0.07 1.06 6.82 -51.93 -0.35 0.71 16 44 H 0.04 0.78 6.57 -51.93 -0.34 0.44 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.38 10.34 5.60 -40.82 -0.23 10.11 16 48 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -35.70 380.18 -7.17 -42.87 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.32 Total: 5.79 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -0.83 Total: 5.87 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: 0.19 Total: -67.62 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.05 Total: -10.52 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.02 Total: 19.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.70 -7.17 -42.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265091759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.573 kcal (2) G-P(sol) polarization free energy of solvation -35.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds