Wall clock time and date at job start Tue Mar 31 2020 22:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30372 * 125.96473 * 2 1 4 4 N 1.39915 * 109.02146 * 179.97438 * 3 2 1 5 5 C 1.46501 * 125.74635 * 179.97438 * 4 3 2 6 6 C 1.34420 * 108.51272 * 0.22292 * 4 3 2 7 7 F 1.35106 * 126.34201 * 179.75475 * 6 4 3 8 8 C 1.38504 * 107.31206 * 359.64167 * 6 4 3 9 9 C 1.47166 * 126.45820 * 180.13386 * 8 6 4 10 10 O 1.21634 * 119.99867 * 270.26566 * 9 8 6 11 11 N 1.34770 * 119.99973 * 90.26472 * 9 8 6 12 12 C 1.46927 * 120.63161 * 355.05314 * 11 9 8 13 13 C 1.53196 * 108.77332 * 233.58742 * 12 11 9 14 14 C 1.53038 * 109.31189 * 305.36324 * 13 12 11 15 15 C 1.53038 * 109.53933 * 61.36706 * 14 13 12 16 16 C 1.46929 * 120.62924 * 174.77291 * 11 9 8 17 17 H 1.08998 * 109.58806 * 246.19787 * 16 11 9 18 18 C 1.52998 * 109.58866 * 6.62891 * 16 11 9 19 19 H 1.09002 * 109.46762 * 306.07979 * 18 16 11 20 20 C 1.53002 * 109.47105 * 186.07854 * 18 16 11 21 21 N 1.46498 * 109.47479 * 66.07647 * 18 16 11 22 22 C 1.36934 * 120.00311 * 205.00677 * 21 18 16 23 23 H 1.07999 * 119.99625 * 359.97438 * 22 21 18 24 24 C 1.38814 * 120.00293 * 180.02562 * 22 21 18 25 25 N 1.31620 * 119.99497 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99959 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47107 * 90.00244 * 26 24 22 28 28 H 1.48503 * 109.47022 * 209.99673 * 26 24 22 29 29 H 1.48496 * 109.47176 * 329.99679 * 26 24 22 30 30 H 1.09005 * 109.47241 * 90.03145 * 1 2 3 31 31 H 1.09001 * 109.47291 * 210.02932 * 1 2 3 32 32 H 1.08999 * 109.47412 * 330.02846 * 1 2 3 33 33 H 1.08999 * 109.46779 * 90.02188 * 5 4 3 34 34 H 1.08996 * 109.47091 * 210.02500 * 5 4 3 35 35 H 1.09003 * 109.46922 * 330.02004 * 5 4 3 36 36 H 1.09004 * 109.58476 * 353.37023 * 12 11 9 37 37 H 1.09001 * 109.58717 * 113.65641 * 12 11 9 38 38 H 1.09001 * 109.49867 * 65.31923 * 13 12 11 39 39 H 1.09001 * 109.49541 * 185.38080 * 13 12 11 40 40 H 1.09002 * 109.45918 * 181.38928 * 14 13 12 41 41 H 1.09001 * 109.45998 * 301.35899 * 14 13 12 42 42 H 1.08998 * 109.49438 * 58.58649 * 15 14 13 43 43 H 1.09005 * 109.49896 * 178.64777 * 15 14 13 44 44 H 1.08991 * 109.46771 * 304.93701 * 20 18 16 45 45 H 1.09004 * 109.46949 * 64.93823 * 20 18 16 46 46 H 1.09001 * 109.46810 * 184.93544 * 20 18 16 47 47 H 0.97004 * 119.99560 * 24.99500 * 21 18 16 48 48 H 0.96997 * 119.99318 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0552 0.0000 4 7 3.6111 0.6475 0.0006 5 6 4.7763 1.5354 0.0002 6 6 3.6479 -0.6962 -0.0040 7 9 4.7577 -1.4667 -0.0097 8 6 2.3374 -1.1445 0.0008 9 6 1.8930 -2.5474 0.0010 10 8 1.7098 -3.1275 -1.0523 11 7 1.6890 -3.1894 1.1683 12 6 2.0088 -2.5389 2.4463 13 6 2.9361 -3.4573 3.2486 14 6 2.2851 -4.8351 3.3902 15 6 2.0791 -5.4488 2.0035 16 6 1.1369 -4.5509 1.1873 17 1 0.1494 -4.5384 1.6483 18 6 1.0315 -5.0817 -0.2438 19 1 0.4649 -4.3765 -0.8520 20 6 0.3182 -6.4352 -0.2345 21 7 2.3750 -5.2415 -0.8057 22 6 2.5593 -5.2001 -2.1619 23 1 1.7142 -5.0499 -2.8174 24 6 3.8323 -5.3521 -2.6944 25 7 4.8621 -5.5356 -1.8955 26 14 4.0836 -5.2962 -4.5445 27 1 4.3441 -3.8966 -4.9666 28 1 5.2430 -6.1481 -4.9125 29 1 2.8636 -5.7997 -5.2252 30 1 -0.3634 -0.0006 -1.0277 31 1 -0.3634 -0.8897 0.5143 32 1 -0.3634 0.8902 0.5134 33 1 5.0652 1.7560 1.0278 34 1 5.6046 1.0477 -0.5134 35 1 4.5258 2.4633 -0.5140 36 1 2.5091 -1.5890 2.2577 37 1 1.0906 -2.3633 3.0068 38 1 3.8888 -3.5567 2.7284 39 1 3.1043 -3.0305 4.2374 40 1 2.9318 -5.4832 3.9817 41 1 1.3210 -4.7318 3.8882 42 1 3.0399 -5.5295 1.4950 43 1 1.6375 -6.4401 2.1062 44 1 0.8361 -7.1141 0.4428 45 1 -0.7103 -6.3016 0.1011 46 1 0.3205 -6.8540 -1.2408 47 1 3.1339 -5.3766 -0.2169 48 1 5.7516 -5.6415 -2.2675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265091759.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:36 Heat of formation + Delta-G solvation = 32.703654 kcal Electronic energy + Delta-G solvation = -32525.795796 eV Core-core repulsion = 28340.395599 eV Total energy + Delta-G solvation = -4185.400197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.36623 -42.47482 -41.13752 -38.07814 -36.83792 -35.12521 -34.05411 -33.57757 -31.43480 -31.12107 -30.37667 -29.64651 -27.32062 -26.00877 -25.59283 -24.65518 -23.29970 -21.94475 -21.55743 -21.23187 -19.93669 -19.06283 -18.50780 -17.95549 -17.49194 -17.04527 -16.91572 -16.33686 -15.81018 -15.70581 -15.63254 -15.42257 -15.38015 -14.88353 -14.64378 -14.47225 -14.39933 -14.19547 -14.02500 -13.75960 -13.62483 -13.49877 -13.26303 -13.15695 -13.00655 -12.97992 -12.80842 -12.58838 -12.31701 -12.12649 -11.95721 -11.89526 -11.69396 -11.51826 -11.33638 -11.23249 -10.78897 -10.35800 -9.99063 -9.53808 -9.29061 -8.56931 -7.73845 -4.91008 0.27647 0.93501 1.22030 1.40085 1.43040 1.49789 1.85245 2.32738 2.67195 2.87499 3.34078 3.59529 3.74241 3.83486 3.95319 4.00840 4.11495 4.19745 4.23212 4.27053 4.29118 4.34968 4.39792 4.45399 4.52531 4.66258 4.73878 4.75377 4.82767 4.87871 4.90600 4.95661 4.99842 5.06349 5.11843 5.19534 5.29156 5.32106 5.37575 5.52610 5.59536 5.63814 5.66860 5.70964 6.01884 6.29678 6.49597 6.70260 7.53525 7.64637 8.36826 8.59205 9.51330 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.008996 B = 0.006258 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.685791 B = 4473.303469 C = 5955.117058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.126 3.874 3 N -0.278 5.278 4 N -0.372 5.372 5 C 0.083 3.917 6 C 0.266 3.734 7 F -0.101 7.101 8 C -0.289 4.289 9 C 0.569 3.431 10 O -0.498 6.498 11 N -0.599 5.599 12 C 0.116 3.884 13 C -0.132 4.132 14 C -0.107 4.107 15 C -0.129 4.129 16 C 0.150 3.850 17 H 0.103 0.897 18 C 0.163 3.837 19 H 0.061 0.939 20 C -0.160 4.160 21 N -0.704 5.704 22 C -0.149 4.149 23 H 0.053 0.947 24 C -0.098 4.098 25 N -0.980 5.980 26 Si 0.948 3.052 27 H -0.307 1.307 28 H -0.299 1.299 29 H -0.275 1.275 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.031 0.969 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.032 0.968 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.071 0.929 46 H 0.027 0.973 47 H 0.367 0.633 48 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.365 13.477 15.716 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.041 4.041 3 N -0.101 5.101 4 N -0.158 5.158 5 C -0.056 4.056 6 C 0.119 3.881 7 F -0.080 7.080 8 C -0.305 4.305 9 C 0.354 3.646 10 O -0.370 6.370 11 N -0.334 5.334 12 C -0.006 4.006 13 C -0.170 4.170 14 C -0.144 4.144 15 C -0.167 4.167 16 C 0.047 3.953 17 H 0.121 0.879 18 C 0.054 3.946 19 H 0.079 0.921 20 C -0.220 4.220 21 N -0.344 5.344 22 C -0.282 4.282 23 H 0.071 0.929 24 C -0.287 4.287 25 N -0.636 5.636 26 Si 0.782 3.218 27 H -0.236 1.236 28 H -0.226 1.226 29 H -0.200 1.200 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.050 0.950 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.050 0.950 43 H 0.099 0.901 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.047 0.953 47 H 0.201 0.799 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.316 14.509 14.942 22.426 hybrid contribution 1.888 -1.209 -1.481 2.687 sum -6.428 13.300 13.461 19.985 Atomic orbital electron populations 1.20385 0.83051 1.05125 1.04354 1.22603 0.98435 0.87062 0.95955 1.77160 0.84431 1.21245 1.27309 1.48936 1.07958 1.01991 1.56867 1.22422 0.82646 0.94497 1.05992 1.18110 0.83532 0.82766 1.03689 1.91675 1.50293 1.72177 1.93896 1.20045 0.90809 0.96283 1.23403 1.17411 0.78723 0.84132 0.84324 1.91076 1.48292 1.65020 1.32643 1.47868 1.64523 1.15447 1.05579 1.21734 0.99995 0.95331 0.83532 1.21904 0.97816 0.96598 1.00711 1.21465 1.02041 0.95535 0.95391 1.22000 0.99073 0.99312 0.96353 1.21694 0.96890 0.80481 0.96260 0.87900 1.20840 0.87558 0.94208 0.91946 0.92144 1.22425 1.00090 0.99174 1.00349 1.42520 1.04006 1.84902 1.02985 1.19220 0.91636 1.32353 0.85020 0.92859 1.25132 0.96056 1.07605 0.99912 1.69788 0.97994 1.62341 1.33442 0.85423 0.76766 0.76192 0.83421 1.23580 1.22609 1.20030 0.89618 0.89526 0.87628 0.87559 0.88925 0.86435 0.91629 0.88442 0.94955 0.88229 0.91303 0.89137 0.94954 0.90066 0.93253 0.91009 0.95346 0.79918 0.95383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 10.28 71.24 0.73 -0.72 16 2 C 0.13 3.63 7.26 43.55 0.32 3.94 16 3 N -0.28 -7.84 12.49 -46.64 -0.58 -8.42 16 4 N -0.37 -10.48 3.98 -368.85 -1.47 -11.95 16 5 C 0.08 1.45 11.43 127.77 1.46 2.91 16 6 C 0.27 9.52 8.43 84.36 0.71 10.23 16 7 F -0.10 -4.15 17.31 44.97 0.78 -3.37 16 8 C -0.29 -10.35 3.98 -20.09 -0.08 -10.43 16 9 C 0.57 22.98 6.93 86.59 0.60 23.58 16 10 O -0.50 -25.13 9.83 -4.14 -0.04 -25.18 16 11 N -0.60 -19.51 2.96 -798.35 -2.37 -21.88 16 12 C 0.12 2.80 6.32 86.36 0.55 3.34 16 13 C -0.13 -3.05 6.08 30.67 0.19 -2.86 16 14 C -0.11 -2.34 5.88 30.62 0.18 -2.16 16 15 C -0.13 -3.92 4.89 30.82 0.15 -3.77 16 16 C 0.15 4.77 2.73 45.12 0.12 4.89 16 17 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 18 C 0.16 6.75 1.88 44.99 0.08 6.83 16 19 H 0.06 2.80 5.90 -6.91 -0.04 2.76 16 20 C -0.16 -5.79 9.39 71.98 0.68 -5.11 16 21 N -0.70 -37.43 3.62 -322.94 -1.17 -38.60 16 22 C -0.15 -9.04 7.98 84.03 0.67 -8.37 16 23 H 0.05 3.29 7.83 -2.91 -0.02 3.27 16 24 C -0.10 -6.20 5.50 84.86 0.47 -5.74 16 25 N -0.98 -65.10 13.06 21.65 0.28 -64.82 16 26 Si 0.95 52.18 29.55 68.60 2.03 54.21 16 27 H -0.31 -17.10 7.11 99.48 0.71 -16.40 16 28 H -0.30 -16.33 7.11 99.48 0.71 -15.62 16 29 H -0.27 -14.38 7.11 99.48 0.71 -13.67 16 30 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 31 H 0.09 1.69 8.01 -2.39 -0.02 1.67 16 32 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.69 6.18 -2.39 -0.01 1.67 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.03 1.31 6.05 -2.39 -0.01 1.29 16 43 H 0.08 2.27 6.82 -2.38 -0.02 2.25 16 44 H 0.05 1.70 6.57 -2.39 -0.02 1.69 16 45 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.37 21.09 5.60 -92.71 -0.52 20.57 16 48 H 0.24 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -83.39 380.18 4.72 -78.67 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.43 Total: 24.76 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 6.82 Total: 16.58 kcal Atomic # 7 Polarization: -140.37 SS G_CDS: -5.31 Total: -145.67 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.04 Total: -25.18 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.78 Total: -3.37 kcal Atomic # 14 Polarization: 52.18 SS G_CDS: 2.03 Total: 54.21 kcal Total: -83.39 4.72 -78.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265091759.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.376 kcal (2) G-P(sol) polarization free energy of solvation -83.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds