Wall clock time and date at job start Tue Mar 31 2020 22:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30371 * 125.96048 * 2 1 4 4 N 1.39922 * 109.01712 * 180.02562 * 3 2 1 5 5 C 1.46507 * 125.74178 * 180.02562 * 4 3 2 6 6 C 1.34416 * 108.51629 * 359.76636 * 4 3 2 7 7 F 1.35094 * 126.34675 * 180.25623 * 6 4 3 8 8 C 1.38510 * 107.30782 * 0.36505 * 6 4 3 9 9 C 1.47168 * 126.45545 * 179.89129 * 8 6 4 10 10 O 1.21636 * 120.00247 * 269.69352 * 9 8 6 11 11 N 1.34775 * 119.99641 * 89.69490 * 9 8 6 12 12 C 1.46920 * 120.63072 * 355.21293 * 11 9 8 13 13 C 1.53193 * 108.77460 * 126.41502 * 12 11 9 14 14 C 1.53042 * 109.31355 * 54.63466 * 13 12 11 15 15 C 1.53036 * 109.53645 * 298.63456 * 14 13 12 16 16 C 1.46927 * 120.62970 * 175.23647 * 11 9 8 17 17 H 1.08999 * 109.58944 * 113.65632 * 16 11 9 18 18 C 1.53005 * 109.58418 * 353.37276 * 16 11 9 19 19 H 1.08994 * 109.47203 * 312.44772 * 18 16 11 20 20 C 1.53003 * 109.46621 * 192.44681 * 18 16 11 21 21 N 1.46502 * 109.46818 * 72.44998 * 18 16 11 22 22 C 1.36941 * 119.99856 * 195.38972 * 21 18 16 23 23 H 1.07998 * 119.99701 * 0.02562 * 22 21 18 24 24 C 1.38807 * 119.99889 * 180.02562 * 22 21 18 25 25 N 1.31620 * 119.99699 * 180.02562 * 24 22 21 26 26 Si 1.86792 * 120.00344 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.47095 * 90.00044 * 26 24 22 28 28 H 1.48502 * 109.47121 * 210.00109 * 26 24 22 29 29 H 1.48502 * 109.47073 * 330.00356 * 26 24 22 30 30 H 1.08995 * 109.47153 * 269.97148 * 1 2 3 31 31 H 1.08995 * 109.46871 * 29.97864 * 1 2 3 32 32 H 1.09002 * 109.46646 * 149.97476 * 1 2 3 33 33 H 1.09001 * 109.47031 * 89.97229 * 5 4 3 34 34 H 1.08995 * 109.46657 * 209.97539 * 5 4 3 35 35 H 1.08998 * 109.46763 * 329.97144 * 5 4 3 36 36 H 1.09002 * 109.59015 * 246.20000 * 12 11 9 37 37 H 1.08998 * 109.59344 * 6.62649 * 12 11 9 38 38 H 1.09003 * 109.50154 * 174.58461 * 13 12 11 39 39 H 1.09001 * 109.50073 * 294.64848 * 13 12 11 40 40 H 1.09000 * 109.46132 * 58.65493 * 14 13 12 41 41 H 1.08997 * 109.45817 * 178.62972 * 14 13 12 42 42 H 1.08999 * 109.50346 * 301.41349 * 15 14 13 43 43 H 1.09005 * 109.50053 * 181.31759 * 15 14 13 44 44 H 1.09000 * 109.46644 * 186.25677 * 20 18 16 45 45 H 1.08995 * 109.47526 * 306.25567 * 20 18 16 46 46 H 1.08990 * 109.47248 * 66.26362 * 20 18 16 47 47 H 0.97003 * 120.00247 * 15.39203 * 21 18 16 48 48 H 0.96998 * 120.00109 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2727 1.0553 0.0000 4 7 3.6111 0.6475 -0.0006 5 6 4.7763 1.5356 -0.0002 6 6 3.6480 -0.6962 0.0042 7 9 4.7577 -1.4666 0.0102 8 6 2.3375 -1.1444 -0.0005 9 6 1.8931 -2.5474 -0.0001 10 8 1.7085 -3.1273 -1.0532 11 7 1.6907 -3.1897 1.1674 12 6 2.0088 -2.5381 2.4452 13 6 0.7716 -2.5908 3.3470 14 6 0.3040 -4.0419 3.4806 15 6 -0.0794 -4.5850 2.1023 16 6 1.1482 -4.5550 1.1864 17 1 1.9045 -5.2436 1.5629 18 6 0.7412 -4.9649 -0.2305 19 1 0.1555 -4.1663 -0.6856 20 6 -0.0983 -6.2426 -0.1703 21 7 1.9429 -5.2074 -1.0327 22 6 1.8525 -5.2765 -2.3974 23 1 0.8956 -5.1519 -2.8822 24 6 2.9910 -5.5068 -3.1575 25 7 2.9042 -5.5728 -4.4692 26 14 4.6462 -5.7216 -2.3190 27 1 4.8627 -7.1583 -2.0116 28 1 5.7239 -5.2404 -3.2204 29 1 4.6681 -4.9370 -1.0584 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 5.0652 1.7555 1.0275 34 1 5.6047 1.0482 -0.5142 35 1 4.5258 2.4638 -0.5138 36 1 2.8346 -3.0618 2.9269 37 1 2.2868 -1.4994 2.2666 38 1 1.0222 -2.1972 4.3321 39 1 -0.0250 -1.9905 2.9073 40 1 1.1097 -4.6461 3.8977 41 1 -0.5617 -4.0851 4.1414 42 1 -0.8681 -3.9665 1.6739 43 1 -0.4344 -5.6109 2.2012 44 1 -0.2945 -6.5963 -1.1825 45 1 0.4448 -7.0085 0.3833 46 1 -1.0432 -6.0332 0.3309 47 1 2.8024 -5.3190 -0.5973 48 1 3.6997 -5.7333 -5.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265091760.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:41 Heat of formation + Delta-G solvation = 60.623082 kcal Electronic energy + Delta-G solvation = -32362.257985 eV Core-core repulsion = 28178.068465 eV Total energy + Delta-G solvation = -4184.189520 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.17201 -41.37080 -39.90150 -36.85446 -35.39924 -34.10053 -32.56022 -32.15940 -30.30501 -30.16537 -29.44451 -28.10667 -26.33664 -24.84356 -24.21153 -22.53810 -22.13883 -20.71208 -20.40751 -19.94521 -19.07629 -17.73754 -17.06553 -16.79246 -16.28112 -15.96195 -15.58821 -14.85483 -14.68750 -14.50129 -14.28021 -14.12194 -13.91777 -13.69251 -13.55285 -13.38198 -13.35398 -12.97684 -12.74089 -12.52423 -12.46435 -12.29039 -12.23432 -12.16788 -12.07817 -11.40542 -11.36111 -11.01631 -10.86321 -10.80827 -10.66166 -10.60964 -10.43483 -10.06787 -9.76466 -9.33807 -9.28181 -8.76994 -8.64153 -8.27269 -8.03422 -6.72101 -5.43449 -2.70154 1.42213 1.92509 2.33749 3.18580 3.43939 3.55182 3.59428 3.61922 3.90321 4.33752 4.73230 4.78436 4.84063 4.85248 4.88037 4.89203 5.05456 5.10479 5.13086 5.20526 5.36670 5.40488 5.47621 5.54179 5.58702 5.71616 5.75680 5.76244 5.80845 5.85419 5.87392 5.98407 6.05642 6.06461 6.10018 6.30807 6.36299 6.41695 6.44786 6.63762 6.70696 6.91261 7.04511 7.33608 7.37975 7.92033 8.31167 8.73983 8.94989 9.54108 10.27460 10.47893 11.77234 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.009070 B = 0.006435 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.363239 B = 4350.259689 C = 6153.255087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.128 3.872 3 N -0.277 5.277 4 N -0.380 5.380 5 C 0.095 3.905 6 C 0.280 3.720 7 F -0.089 7.089 8 C -0.264 4.264 9 C 0.549 3.451 10 O -0.417 6.417 11 N -0.608 5.608 12 C 0.115 3.885 13 C -0.132 4.132 14 C -0.118 4.118 15 C -0.127 4.127 16 C 0.144 3.856 17 H 0.064 0.936 18 C 0.187 3.813 19 H 0.066 0.934 20 C -0.168 4.168 21 N -0.719 5.719 22 C -0.181 4.181 23 H 0.085 0.915 24 C -0.009 4.009 25 N -0.949 5.949 26 Si 0.876 3.124 27 H -0.291 1.291 28 H -0.298 1.298 29 H -0.282 1.282 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.040 0.960 47 H 0.353 0.647 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.992 12.902 19.338 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.039 4.039 3 N -0.100 5.100 4 N -0.166 5.166 5 C -0.045 4.045 6 C 0.134 3.866 7 F -0.068 7.068 8 C -0.281 4.281 9 C 0.331 3.669 10 O -0.282 6.282 11 N -0.346 5.346 12 C -0.008 4.008 13 C -0.170 4.170 14 C -0.156 4.156 15 C -0.165 4.165 16 C 0.041 3.959 17 H 0.082 0.918 18 C 0.078 3.922 19 H 0.084 0.916 20 C -0.228 4.228 21 N -0.361 5.361 22 C -0.312 4.312 23 H 0.103 0.897 24 C -0.202 4.202 25 N -0.601 5.601 26 Si 0.709 3.291 27 H -0.219 1.219 28 H -0.225 1.225 29 H -0.209 1.209 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.185 0.815 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.944 13.903 18.454 23.292 hybrid contribution 2.129 -0.952 0.604 2.409 sum -0.814 12.951 19.058 23.056 Atomic orbital electron populations 1.20279 0.85413 1.04359 1.03299 1.22147 0.97073 0.88173 0.96492 1.77221 0.84195 1.21346 1.27242 1.48583 1.07071 1.02620 1.58302 1.21993 0.83987 0.94699 1.03866 1.17923 0.83740 0.81641 1.03260 1.91666 1.49738 1.71603 1.93823 1.20053 0.89883 0.96577 1.21544 1.17317 0.80962 0.83819 0.84811 1.91441 1.44424 1.62282 1.30083 1.47849 1.66245 1.15449 1.05065 1.21505 0.96692 0.98013 0.84630 1.21902 0.98311 0.97505 0.99309 1.21519 1.00903 0.95858 0.97328 1.21997 0.97973 1.01883 0.94680 1.21579 0.94408 0.82028 0.97894 0.91826 1.20360 0.90036 0.94660 0.87163 0.91632 1.22521 0.98444 0.99820 1.02021 1.42672 1.03682 1.85746 1.03972 1.18876 0.95455 1.36164 0.80670 0.89677 1.24490 0.96499 1.04153 0.95047 1.69685 1.27659 1.59389 1.03329 0.86622 0.86593 0.77287 0.78584 1.21882 1.22502 1.20862 0.90030 0.90208 0.89512 0.90173 0.89214 0.88351 0.92313 0.90695 0.91465 0.91455 0.92065 0.91988 0.91336 0.90455 0.91903 0.93948 0.94146 0.81462 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.28 36.01 0.37 -0.48 16 2 C 0.13 1.86 7.26 -82.01 -0.60 1.26 16 3 N -0.28 -3.97 12.49 33.91 0.42 -3.55 16 4 N -0.38 -5.18 3.98 -67.94 -0.27 -5.45 16 5 C 0.10 0.82 11.43 59.85 0.68 1.50 16 6 C 0.28 4.57 8.63 -16.32 -0.14 4.43 16 7 F -0.09 -1.54 17.31 2.25 0.04 -1.50 16 8 C -0.26 -4.49 3.86 -104.97 -0.40 -4.90 16 9 C 0.55 10.47 6.97 -12.64 -0.09 10.38 16 10 O -0.42 -10.05 9.95 5.25 0.05 -10.00 16 11 N -0.61 -9.59 2.97 -166.57 -0.50 -10.08 16 12 C 0.12 1.39 6.35 -3.71 -0.02 1.37 16 13 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 14 C -0.12 -1.13 5.88 -26.69 -0.16 -1.29 16 15 C -0.13 -1.49 4.45 -26.61 -0.12 -1.61 16 16 C 0.14 2.28 2.62 -67.60 -0.18 2.10 16 17 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 18 C 0.19 3.72 1.82 -67.93 -0.12 3.59 16 19 H 0.07 1.44 6.41 -51.93 -0.33 1.11 16 20 C -0.17 -2.98 8.47 37.16 0.31 -2.67 16 21 N -0.72 -17.91 3.02 -53.42 -0.16 -18.07 16 22 C -0.18 -5.39 8.58 -15.06 -0.13 -5.52 16 23 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.95 -31.91 13.97 55.49 0.78 -31.14 16 26 Si 0.88 24.28 27.73 -169.99 -4.71 19.56 16 27 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 28 H -0.30 -8.42 7.11 56.52 0.40 -8.02 16 29 H -0.28 -7.56 6.52 56.52 0.37 -7.19 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.09 8.01 -51.93 -0.42 0.67 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.91 6.27 -51.93 -0.33 0.58 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.86 6.84 -51.93 -0.35 0.50 16 44 H 0.06 1.28 7.91 -51.93 -0.41 0.87 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.04 0.58 6.86 -51.93 -0.36 0.23 16 47 H 0.35 8.99 5.56 -40.82 -0.23 8.76 16 48 H 0.25 8.15 8.31 -40.82 -0.34 7.81 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -37.56 380.36 -6.97 -44.54 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.51 Total: 3.56 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -0.85 Total: 6.40 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: 0.27 Total: -68.29 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.05 Total: -10.00 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -4.71 Total: 19.56 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.56 -6.97 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265091760.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.162 kcal (2) G-P(sol) polarization free energy of solvation -37.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds