Wall clock time and date at job start Tue Mar 31 2020 22:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30371 * 125.96048 * 2 1 4 4 N 1.39922 * 109.01712 * 180.02562 * 3 2 1 5 5 C 1.46507 * 125.74178 * 180.02562 * 4 3 2 6 6 C 1.34416 * 108.51629 * 359.76636 * 4 3 2 7 7 F 1.35094 * 126.34675 * 180.25623 * 6 4 3 8 8 C 1.38510 * 107.30782 * 0.36505 * 6 4 3 9 9 C 1.47168 * 126.45545 * 179.89129 * 8 6 4 10 10 O 1.21636 * 120.00247 * 269.69352 * 9 8 6 11 11 N 1.34775 * 119.99641 * 89.69490 * 9 8 6 12 12 C 1.46920 * 120.63072 * 355.21293 * 11 9 8 13 13 C 1.53193 * 108.77460 * 126.41502 * 12 11 9 14 14 C 1.53042 * 109.31355 * 54.63466 * 13 12 11 15 15 C 1.53036 * 109.53645 * 298.63456 * 14 13 12 16 16 C 1.46927 * 120.62970 * 175.23647 * 11 9 8 17 17 H 1.08999 * 109.58944 * 113.65632 * 16 11 9 18 18 C 1.53005 * 109.58418 * 353.37276 * 16 11 9 19 19 H 1.08994 * 109.47203 * 312.44772 * 18 16 11 20 20 C 1.53003 * 109.46621 * 192.44681 * 18 16 11 21 21 N 1.46502 * 109.46818 * 72.44998 * 18 16 11 22 22 C 1.36941 * 119.99856 * 195.38972 * 21 18 16 23 23 H 1.07998 * 119.99701 * 0.02562 * 22 21 18 24 24 C 1.38807 * 119.99889 * 180.02562 * 22 21 18 25 25 N 1.31620 * 119.99699 * 180.02562 * 24 22 21 26 26 Si 1.86792 * 120.00344 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.47095 * 90.00044 * 26 24 22 28 28 H 1.48502 * 109.47121 * 210.00109 * 26 24 22 29 29 H 1.48502 * 109.47073 * 330.00356 * 26 24 22 30 30 H 1.08995 * 109.47153 * 269.97148 * 1 2 3 31 31 H 1.08995 * 109.46871 * 29.97864 * 1 2 3 32 32 H 1.09002 * 109.46646 * 149.97476 * 1 2 3 33 33 H 1.09001 * 109.47031 * 89.97229 * 5 4 3 34 34 H 1.08995 * 109.46657 * 209.97539 * 5 4 3 35 35 H 1.08998 * 109.46763 * 329.97144 * 5 4 3 36 36 H 1.09002 * 109.59015 * 246.20000 * 12 11 9 37 37 H 1.08998 * 109.59344 * 6.62649 * 12 11 9 38 38 H 1.09003 * 109.50154 * 174.58461 * 13 12 11 39 39 H 1.09001 * 109.50073 * 294.64848 * 13 12 11 40 40 H 1.09000 * 109.46132 * 58.65493 * 14 13 12 41 41 H 1.08997 * 109.45817 * 178.62972 * 14 13 12 42 42 H 1.08999 * 109.50346 * 301.41349 * 15 14 13 43 43 H 1.09005 * 109.50053 * 181.31759 * 15 14 13 44 44 H 1.09000 * 109.46644 * 186.25677 * 20 18 16 45 45 H 1.08995 * 109.47526 * 306.25567 * 20 18 16 46 46 H 1.08990 * 109.47248 * 66.26362 * 20 18 16 47 47 H 0.97003 * 120.00247 * 15.39203 * 21 18 16 48 48 H 0.96998 * 120.00109 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2727 1.0553 0.0000 4 7 3.6111 0.6475 -0.0006 5 6 4.7763 1.5356 -0.0002 6 6 3.6480 -0.6962 0.0042 7 9 4.7577 -1.4666 0.0102 8 6 2.3375 -1.1444 -0.0005 9 6 1.8931 -2.5474 -0.0001 10 8 1.7085 -3.1273 -1.0532 11 7 1.6907 -3.1897 1.1674 12 6 2.0088 -2.5381 2.4452 13 6 0.7716 -2.5908 3.3470 14 6 0.3040 -4.0419 3.4806 15 6 -0.0794 -4.5850 2.1023 16 6 1.1482 -4.5550 1.1864 17 1 1.9045 -5.2436 1.5629 18 6 0.7412 -4.9649 -0.2305 19 1 0.1555 -4.1663 -0.6856 20 6 -0.0983 -6.2426 -0.1703 21 7 1.9429 -5.2074 -1.0327 22 6 1.8525 -5.2765 -2.3974 23 1 0.8956 -5.1519 -2.8822 24 6 2.9910 -5.5068 -3.1575 25 7 2.9042 -5.5728 -4.4692 26 14 4.6462 -5.7216 -2.3190 27 1 4.8627 -7.1583 -2.0116 28 1 5.7239 -5.2404 -3.2204 29 1 4.6681 -4.9370 -1.0584 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 5.0652 1.7555 1.0275 34 1 5.6047 1.0482 -0.5142 35 1 4.5258 2.4638 -0.5138 36 1 2.8346 -3.0618 2.9269 37 1 2.2868 -1.4994 2.2666 38 1 1.0222 -2.1972 4.3321 39 1 -0.0250 -1.9905 2.9073 40 1 1.1097 -4.6461 3.8977 41 1 -0.5617 -4.0851 4.1414 42 1 -0.8681 -3.9665 1.6739 43 1 -0.4344 -5.6109 2.2012 44 1 -0.2945 -6.5963 -1.1825 45 1 0.4448 -7.0085 0.3833 46 1 -1.0432 -6.0332 0.3309 47 1 2.8024 -5.3190 -0.5973 48 1 3.6997 -5.7333 -5.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265091760.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:40 Heat of formation + Delta-G solvation = 34.451679 kcal Electronic energy + Delta-G solvation = -32363.392862 eV Core-core repulsion = 28178.068465 eV Total energy + Delta-G solvation = -4185.324397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.46597 -42.53190 -41.20524 -38.13936 -37.06326 -35.17125 -34.18679 -33.62599 -31.97038 -31.38047 -30.44061 -29.58688 -27.39250 -26.12516 -25.67491 -24.04174 -23.37907 -21.88091 -21.65674 -21.32059 -20.41259 -19.42453 -18.56135 -18.01880 -17.50787 -17.15973 -16.90010 -16.66183 -15.96686 -15.77713 -15.62599 -15.49090 -15.15639 -14.71889 -14.68556 -14.59893 -14.39920 -14.28548 -14.20154 -13.89885 -13.74559 -13.66816 -13.57866 -13.29915 -13.07138 -13.02275 -12.85501 -12.60814 -12.34162 -12.10901 -11.97273 -11.86748 -11.67195 -11.66315 -11.41456 -11.20102 -10.82063 -10.40065 -10.15276 -9.68319 -9.43029 -8.81271 -7.85522 -5.06449 0.22790 0.89552 1.17486 1.29076 1.34520 1.39972 1.78239 2.20574 2.56622 2.79087 3.27967 3.45452 3.64717 3.73352 3.78925 3.96937 4.06063 4.12091 4.19737 4.23735 4.26422 4.30167 4.36372 4.38001 4.52363 4.60899 4.72028 4.74380 4.76723 4.78834 4.85359 4.89978 4.99116 5.05959 5.10394 5.16773 5.24368 5.31140 5.33192 5.44570 5.53543 5.58923 5.63229 5.91260 5.94233 6.25578 6.36974 6.60296 7.25778 7.54433 8.05022 8.22146 9.39392 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.009070 B = 0.006435 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.363239 B = 4350.259689 C = 6153.255087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.126 3.874 3 N -0.277 5.277 4 N -0.370 5.370 5 C 0.083 3.917 6 C 0.266 3.734 7 F -0.100 7.100 8 C -0.289 4.289 9 C 0.552 3.448 10 O -0.488 6.488 11 N -0.603 5.603 12 C 0.110 3.890 13 C -0.125 4.125 14 C -0.113 4.113 15 C -0.119 4.119 16 C 0.146 3.854 17 H 0.064 0.936 18 C 0.182 3.818 19 H 0.040 0.960 20 C -0.157 4.157 21 N -0.718 5.718 22 C -0.143 4.143 23 H 0.046 0.954 24 C -0.087 4.087 25 N -1.002 6.002 26 Si 0.946 3.054 27 H -0.279 1.279 28 H -0.307 1.307 29 H -0.272 1.272 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.026 0.974 45 H 0.054 0.946 46 H 0.079 0.921 47 H 0.351 0.649 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.211 14.165 23.767 27.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.040 4.040 3 N -0.100 5.100 4 N -0.155 5.155 5 C -0.056 4.056 6 C 0.118 3.882 7 F -0.079 7.079 8 C -0.306 4.306 9 C 0.336 3.664 10 O -0.359 6.359 11 N -0.339 5.339 12 C -0.012 4.012 13 C -0.163 4.163 14 C -0.151 4.151 15 C -0.158 4.158 16 C 0.043 3.957 17 H 0.082 0.918 18 C 0.075 3.925 19 H 0.058 0.942 20 C -0.217 4.217 21 N -0.359 5.359 22 C -0.275 4.275 23 H 0.064 0.936 24 C -0.275 4.275 25 N -0.658 5.658 26 Si 0.777 3.223 27 H -0.206 1.206 28 H -0.235 1.235 29 H -0.198 1.198 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.045 0.955 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.183 0.817 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.186 15.198 23.017 27.765 hybrid contribution 2.104 -1.201 -0.693 2.520 sum -1.082 13.996 22.324 26.371 Atomic orbital electron populations 1.20369 0.83464 1.04118 1.05071 1.22531 0.98303 0.87218 0.95941 1.77198 0.84537 1.21122 1.27185 1.48961 1.07941 1.02069 1.56552 1.22455 0.82559 0.94513 1.06087 1.18001 0.83280 0.82810 1.04092 1.91628 1.50139 1.72125 1.94007 1.20041 0.90923 0.96202 1.23420 1.17661 0.79543 0.84492 0.84707 1.91399 1.47862 1.64265 1.32374 1.47968 1.64819 1.15358 1.05717 1.21777 0.98600 0.97656 0.83160 1.21884 0.96729 0.97822 0.99838 1.21513 1.02158 0.95575 0.95822 1.21966 0.95598 1.03063 0.95149 1.21554 0.96406 0.82014 0.95734 0.91812 1.20509 0.88217 0.94844 0.88947 0.94215 1.22370 1.00091 0.98726 1.00529 1.42652 1.05315 1.85555 1.02364 1.18737 0.93499 1.32340 0.82921 0.93646 1.25184 1.00355 1.06282 0.95679 1.69877 1.28251 1.62614 1.05072 0.85481 0.81582 0.77719 0.77471 1.20592 1.23522 1.19754 0.87157 0.88702 0.91389 0.87424 0.88520 0.86628 0.91587 0.90806 0.88703 0.91236 0.91542 0.89435 0.91392 0.89114 0.95488 0.92658 0.90264 0.81707 0.94480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 10.28 71.24 0.73 -0.80 16 2 C 0.13 3.57 7.26 43.55 0.32 3.88 16 3 N -0.28 -7.51 12.49 -46.64 -0.58 -8.09 16 4 N -0.37 -9.56 3.98 -368.85 -1.47 -11.03 16 5 C 0.08 1.23 11.43 127.77 1.46 2.69 16 6 C 0.27 8.57 8.63 84.36 0.73 9.30 16 7 F -0.10 -3.44 17.31 44.97 0.78 -2.66 16 8 C -0.29 -9.83 3.86 -20.09 -0.08 -9.91 16 9 C 0.55 21.37 6.97 86.59 0.60 21.98 16 10 O -0.49 -24.62 9.95 -4.15 -0.04 -24.66 16 11 N -0.60 -18.34 2.97 -799.16 -2.38 -20.72 16 12 C 0.11 2.36 6.35 86.36 0.55 2.91 16 13 C -0.12 -1.80 6.08 30.67 0.19 -1.62 16 14 C -0.11 -1.62 5.88 30.62 0.18 -1.44 16 15 C -0.12 -2.41 4.45 30.67 0.14 -2.27 16 16 C 0.15 4.39 2.62 44.98 0.12 4.51 16 17 H 0.06 1.95 8.11 -2.39 -0.02 1.93 16 18 C 0.18 7.33 1.82 44.99 0.08 7.41 16 19 H 0.04 1.83 6.41 -2.39 -0.02 1.82 16 20 C -0.16 -5.51 8.47 71.98 0.61 -4.90 16 21 N -0.72 -36.71 3.02 -322.93 -0.97 -37.69 16 22 C -0.14 -8.92 8.58 84.03 0.72 -8.20 16 23 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 24 C -0.09 -5.71 5.50 84.86 0.47 -5.24 16 25 N -1.00 -70.85 13.97 21.65 0.30 -70.55 16 26 Si 0.95 52.19 27.73 68.60 1.90 54.10 16 27 H -0.28 -14.68 7.11 99.48 0.71 -13.97 16 28 H -0.31 -17.30 7.11 99.48 0.71 -16.59 16 29 H -0.27 -14.24 6.52 99.48 0.65 -13.60 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.72 8.01 -2.39 -0.02 1.70 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.63 6.27 -2.39 -0.01 1.62 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.09 1.63 6.84 -2.38 -0.02 1.61 16 44 H 0.03 1.11 7.91 -2.39 -0.02 1.09 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.08 2.14 6.86 -2.39 -0.02 2.12 16 47 H 0.35 18.01 5.56 -92.71 -0.52 17.50 16 48 H 0.25 16.77 8.31 -92.71 -0.77 15.99 16 Total: -1.00 -88.15 380.36 4.75 -83.39 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.40 Total: 19.60 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 6.81 Total: 18.30 kcal Atomic # 7 Polarization: -142.97 SS G_CDS: -5.10 Total: -148.07 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.04 Total: -24.66 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.66 kcal Atomic # 14 Polarization: 52.19 SS G_CDS: 1.90 Total: 54.10 kcal Total: -88.15 4.75 -83.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265091760.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.846 kcal (2) G-P(sol) polarization free energy of solvation -88.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds