Wall clock time and date at job start Tue Mar 31 2020 22:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30376 * 125.96552 * 2 1 4 4 N 1.39913 * 109.02166 * 180.02562 * 3 2 1 5 5 C 1.46499 * 125.74400 * 179.97438 * 4 3 2 6 6 C 1.34420 * 108.51502 * 359.76407 * 4 3 2 7 7 F 1.35095 * 126.34437 * 180.24918 * 6 4 3 8 8 C 1.38500 * 107.30788 * 0.36608 * 6 4 3 9 9 C 1.47167 * 126.45526 * 179.89607 * 8 6 4 10 10 O 1.21636 * 120.00158 * 269.68857 * 9 8 6 11 11 N 1.34773 * 119.99911 * 89.69291 * 9 8 6 12 12 C 1.46925 * 120.63218 * 4.74864 * 11 9 8 13 13 C 1.53192 * 108.77427 * 126.39559 * 12 11 9 14 14 C 1.53039 * 109.31344 * 54.63439 * 13 12 11 15 15 C 1.53040 * 109.54040 * 298.63481 * 14 13 12 16 16 C 1.46936 * 120.62909 * 184.75270 * 11 9 8 17 17 H 1.08999 * 109.70155 * 113.75160 * 16 11 9 18 18 C 1.53000 * 109.58720 * 353.39226 * 16 11 9 19 19 H 1.09001 * 109.47171 * 54.40742 * 18 16 11 20 20 C 1.52993 * 109.46979 * 174.40868 * 18 16 11 21 21 N 1.46498 * 109.47242 * 294.40915 * 18 16 11 22 22 C 1.36934 * 120.00282 * 154.99797 * 21 18 16 23 23 H 1.08000 * 119.99641 * 0.02562 * 22 21 18 24 24 C 1.38807 * 119.99914 * 179.72357 * 22 21 18 25 25 N 1.31613 * 120.00471 * 0.27638 * 24 22 21 26 26 Si 1.86804 * 119.99697 * 180.27844 * 24 22 21 27 27 H 1.48500 * 109.47399 * 90.00324 * 26 24 22 28 28 H 1.48504 * 109.46903 * 210.00098 * 26 24 22 29 29 H 1.48500 * 109.47284 * 329.99861 * 26 24 22 30 30 H 1.09001 * 109.47322 * 269.97966 * 1 2 3 31 31 H 1.08997 * 109.47287 * 29.97781 * 1 2 3 32 32 H 1.08994 * 109.46788 * 149.98437 * 1 2 3 33 33 H 1.09003 * 109.46808 * 89.97636 * 5 4 3 34 34 H 1.09000 * 109.47590 * 209.98072 * 5 4 3 35 35 H 1.09003 * 109.47249 * 329.98029 * 5 4 3 36 36 H 1.08996 * 109.58239 * 6.60454 * 12 11 9 37 37 H 1.09005 * 109.58559 * 246.18296 * 12 11 9 38 38 H 1.09001 * 109.49626 * 294.68000 * 13 12 11 39 39 H 1.08995 * 109.52005 * 174.60372 * 13 12 11 40 40 H 1.09000 * 109.45538 * 178.61204 * 14 13 12 41 41 H 1.08995 * 109.45672 * 58.65899 * 14 13 12 42 42 H 1.09001 * 109.49284 * 301.41305 * 15 14 13 43 43 H 1.08998 * 109.52451 * 181.33692 * 15 14 13 44 44 H 1.09001 * 109.47507 * 305.67381 * 20 18 16 45 45 H 1.08998 * 109.47256 * 65.67617 * 20 18 16 46 46 H 1.08997 * 109.47070 * 185.67435 * 20 18 16 47 47 H 0.97007 * 119.99631 * 335.00321 * 21 18 16 48 48 H 0.97006 * 120.00297 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6475 -0.0006 5 6 4.7763 1.5355 -0.0013 6 6 3.6480 -0.6962 0.0043 7 9 4.7577 -1.4667 0.0101 8 6 2.3375 -1.1444 -0.0005 9 6 1.8931 -2.5474 0.0002 10 8 1.7085 -3.1273 -1.0530 11 7 1.6907 -3.1896 1.1676 12 6 1.8085 -2.4744 2.4456 13 6 0.5224 -2.6875 3.2502 14 6 0.2567 -4.1880 3.3918 15 6 0.0671 -4.8073 2.0052 16 6 1.3480 -4.6183 1.1865 17 1 2.1600 -5.1849 1.6423 18 6 1.1195 -5.1099 -0.2443 19 1 1.9917 -4.8728 -0.8536 20 6 0.9006 -6.6240 -0.2344 21 7 -0.0618 -4.4493 -0.8048 22 6 -0.1883 -4.3077 -2.1609 23 1 0.5827 -4.6833 -2.8172 24 6 -1.3104 -3.6869 -2.6922 25 7 -2.2502 -3.2295 -1.8924 26 14 -1.4866 -3.5006 -4.5426 27 1 -2.1878 -4.6873 -5.0950 28 1 -2.2717 -2.2768 -4.8443 29 1 -0.1403 -3.3895 -5.1593 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 5.0655 1.7562 1.0262 34 1 5.6046 1.0477 -0.5152 35 1 4.5257 2.4634 -0.5155 36 1 1.9495 -1.4102 2.2571 37 1 2.6586 -2.8642 3.0055 38 1 -0.3132 -2.2174 2.7318 39 1 0.6335 -2.2428 4.2391 40 1 -0.6446 -4.3428 3.9850 41 1 1.1036 -4.6615 3.8883 42 1 -0.7642 -4.3172 1.4985 43 1 -0.1456 -5.8714 2.1075 44 1 1.7345 -7.1085 0.2736 45 1 -0.0270 -6.8536 0.2899 46 1 0.8383 -6.9888 -1.2596 47 1 -0.7545 -4.1121 -0.2152 48 1 -3.0342 -2.7953 -2.2637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265091761.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:45 Heat of formation + Delta-G solvation = 56.171110 kcal Electronic energy + Delta-G solvation = -32506.160038 eV Core-core repulsion = 28321.777466 eV Total energy + Delta-G solvation = -4184.382572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.18708 -41.24807 -39.75966 -36.67685 -35.18406 -33.96251 -32.31286 -32.07442 -30.14246 -29.57074 -29.19183 -27.96436 -26.16874 -24.67882 -23.81323 -23.15006 -22.03021 -20.61576 -20.36716 -19.82699 -18.59782 -17.40040 -16.87850 -16.74909 -16.16388 -15.89304 -15.45099 -14.66423 -14.56206 -14.39567 -14.07574 -14.02752 -13.88193 -13.43575 -13.42020 -13.38367 -13.11839 -12.86317 -12.68611 -12.38937 -12.15762 -12.03629 -11.99502 -11.91549 -11.69310 -11.31817 -11.04820 -10.79429 -10.68098 -10.58065 -10.54573 -10.43289 -10.29215 -9.99721 -9.68545 -9.29130 -9.19474 -8.65715 -8.60258 -8.10576 -7.81193 -6.49787 -5.43220 -2.63981 1.50224 2.01462 2.50436 3.32161 3.59433 3.62127 3.67444 3.70541 3.97377 4.41778 4.84835 4.88471 4.89683 5.00413 5.07653 5.12435 5.14598 5.22577 5.34481 5.48120 5.53042 5.59472 5.66918 5.78035 5.86346 5.90267 5.93983 5.99505 6.07064 6.11290 6.17606 6.24091 6.28624 6.34179 6.38728 6.50834 6.57652 6.66663 6.72480 6.83205 6.98438 7.08955 7.14766 7.48007 7.53516 8.07090 8.08942 8.75566 9.08771 9.87865 10.43903 10.81160 11.81185 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.009424 B = 0.005956 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.500535 B = 4699.629154 C = 6134.482858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.138 3.862 3 N -0.280 5.280 4 N -0.383 5.383 5 C 0.097 3.903 6 C 0.273 3.727 7 F -0.094 7.094 8 C -0.261 4.261 9 C 0.571 3.429 10 O -0.435 6.435 11 N -0.603 5.603 12 C 0.118 3.882 13 C -0.134 4.134 14 C -0.116 4.116 15 C -0.133 4.133 16 C 0.147 3.853 17 H 0.061 0.939 18 C 0.169 3.831 19 H 0.080 0.920 20 C -0.169 4.169 21 N -0.701 5.701 22 C -0.169 4.169 23 H 0.063 0.937 24 C -0.029 4.029 25 N -0.948 5.948 26 Si 0.893 3.107 27 H -0.298 1.298 28 H -0.297 1.297 29 H -0.287 1.287 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.031 0.969 45 H 0.046 0.954 46 H 0.052 0.948 47 H 0.379 0.621 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.359 5.956 13.185 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.028 4.028 3 N -0.103 5.103 4 N -0.168 5.168 5 C -0.044 4.044 6 C 0.127 3.873 7 F -0.073 7.073 8 C -0.277 4.277 9 C 0.354 3.646 10 O -0.303 6.303 11 N -0.339 5.339 12 C -0.006 4.006 13 C -0.172 4.172 14 C -0.153 4.153 15 C -0.171 4.171 16 C 0.044 3.956 17 H 0.079 0.921 18 C 0.059 3.941 19 H 0.097 0.903 20 C -0.229 4.229 21 N -0.343 5.343 22 C -0.302 4.302 23 H 0.081 0.919 24 C -0.222 4.222 25 N -0.601 5.601 26 Si 0.727 3.273 27 H -0.226 1.226 28 H -0.224 1.224 29 H -0.213 1.213 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.214 0.786 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.523 6.968 12.348 18.917 hybrid contribution 0.089 -0.522 -0.770 0.935 sum 12.612 6.446 11.577 18.293 Atomic orbital electron populations 1.20408 0.84628 1.05607 1.03372 1.22345 0.97420 0.87966 0.95052 1.77282 0.84002 1.21426 1.27606 1.48584 1.07164 1.02486 1.58608 1.21943 0.83982 0.94703 1.03755 1.17810 0.83390 0.81738 1.04387 1.91614 1.49904 1.71752 1.94078 1.20064 0.89728 0.96786 1.21107 1.17054 0.79304 0.83897 0.84349 1.91131 1.44406 1.64157 1.30596 1.47749 1.71416 1.09846 1.04936 1.21486 0.97093 0.97055 0.84994 1.21905 0.98502 0.97230 0.99585 1.21495 1.01067 0.95227 0.97558 1.21988 0.99216 1.01109 0.94795 1.21591 0.95448 0.79870 0.98707 0.92066 1.20686 0.94183 0.89380 0.89807 0.90297 1.22578 0.99388 0.99840 1.01144 1.42398 1.19393 1.68118 1.04367 1.19065 1.00704 1.27129 0.83257 0.91912 1.24483 0.97988 1.03334 0.96398 1.69623 1.10753 1.47374 1.32311 0.86335 0.76944 0.76739 0.87255 1.22610 1.22398 1.21344 0.90269 0.90620 0.87508 0.90297 0.89428 0.88483 0.90751 0.92593 0.91026 0.91665 0.92170 0.92542 0.90022 0.91161 0.94974 0.93536 0.92932 0.78590 0.94376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 10.28 36.01 0.37 -0.98 16 2 C 0.14 2.35 7.02 -82.01 -0.58 1.78 16 3 N -0.28 -4.42 12.49 33.91 0.42 -4.00 16 4 N -0.38 -5.26 3.98 -67.94 -0.27 -5.53 16 5 C 0.10 0.81 11.43 59.85 0.68 1.49 16 6 C 0.27 4.25 8.70 -16.32 -0.14 4.11 16 7 F -0.09 -1.38 17.31 2.25 0.04 -1.35 16 8 C -0.26 -4.62 3.96 -104.97 -0.42 -5.04 16 9 C 0.57 11.27 6.92 -12.64 -0.09 11.18 16 10 O -0.44 -10.50 9.82 5.25 0.05 -10.45 16 11 N -0.60 -10.06 2.97 -166.57 -0.49 -10.55 16 12 C 0.12 1.55 6.32 -3.71 -0.02 1.52 16 13 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 14 C -0.12 -1.41 5.88 -26.69 -0.16 -1.57 16 15 C -0.13 -2.04 4.87 -26.61 -0.13 -2.17 16 16 C 0.15 2.47 2.72 -67.60 -0.18 2.28 16 17 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 18 C 0.17 3.49 1.88 -67.93 -0.13 3.36 16 19 H 0.08 1.82 5.92 -52.15 -0.31 1.51 16 20 C -0.17 -3.13 9.14 37.15 0.34 -2.79 16 21 N -0.70 -17.36 3.60 -53.43 -0.19 -17.55 16 22 C -0.17 -4.81 7.96 -15.06 -0.12 -4.93 16 23 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.03 -0.86 5.50 -17.43 -0.10 -0.96 16 25 N -0.95 -28.61 13.06 55.49 0.72 -27.88 16 26 Si 0.89 23.84 29.55 -169.99 -5.02 18.82 16 27 H -0.30 -7.93 7.11 56.52 0.40 -7.52 16 28 H -0.30 -8.00 7.11 56.52 0.40 -7.59 16 29 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.11 2.22 8.01 -51.93 -0.42 1.80 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.99 6.19 -51.93 -0.32 0.67 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.53 6.05 -51.93 -0.31 1.22 16 43 H 0.07 1.03 7.03 -51.93 -0.37 0.67 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.85 7.03 -51.93 -0.36 0.49 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.38 9.85 5.63 -40.82 -0.23 9.62 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -33.42 380.59 -7.19 -40.61 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.36 Total: 6.63 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.83 Total: 5.51 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: 0.19 Total: -65.51 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.05 Total: -10.45 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 23.84 SS G_CDS: -5.02 Total: 18.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.42 -7.19 -40.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265091761.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.786 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds