Wall clock time and date at job start Tue Mar 31 2020 22:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30376 * 125.96552 * 2 1 4 4 N 1.39913 * 109.02166 * 180.02562 * 3 2 1 5 5 C 1.46499 * 125.74400 * 179.97438 * 4 3 2 6 6 C 1.34420 * 108.51502 * 359.76407 * 4 3 2 7 7 F 1.35095 * 126.34437 * 180.24918 * 6 4 3 8 8 C 1.38500 * 107.30788 * 0.36608 * 6 4 3 9 9 C 1.47167 * 126.45526 * 179.89607 * 8 6 4 10 10 O 1.21636 * 120.00158 * 269.68857 * 9 8 6 11 11 N 1.34773 * 119.99911 * 89.69291 * 9 8 6 12 12 C 1.46925 * 120.63218 * 4.74864 * 11 9 8 13 13 C 1.53192 * 108.77427 * 126.39559 * 12 11 9 14 14 C 1.53039 * 109.31344 * 54.63439 * 13 12 11 15 15 C 1.53040 * 109.54040 * 298.63481 * 14 13 12 16 16 C 1.46936 * 120.62909 * 184.75270 * 11 9 8 17 17 H 1.08999 * 109.70155 * 113.75160 * 16 11 9 18 18 C 1.53000 * 109.58720 * 353.39226 * 16 11 9 19 19 H 1.09001 * 109.47171 * 54.40742 * 18 16 11 20 20 C 1.52993 * 109.46979 * 174.40868 * 18 16 11 21 21 N 1.46498 * 109.47242 * 294.40915 * 18 16 11 22 22 C 1.36934 * 120.00282 * 154.99797 * 21 18 16 23 23 H 1.08000 * 119.99641 * 0.02562 * 22 21 18 24 24 C 1.38807 * 119.99914 * 179.72357 * 22 21 18 25 25 N 1.31613 * 120.00471 * 0.27638 * 24 22 21 26 26 Si 1.86804 * 119.99697 * 180.27844 * 24 22 21 27 27 H 1.48500 * 109.47399 * 90.00324 * 26 24 22 28 28 H 1.48504 * 109.46903 * 210.00098 * 26 24 22 29 29 H 1.48500 * 109.47284 * 329.99861 * 26 24 22 30 30 H 1.09001 * 109.47322 * 269.97966 * 1 2 3 31 31 H 1.08997 * 109.47287 * 29.97781 * 1 2 3 32 32 H 1.08994 * 109.46788 * 149.98437 * 1 2 3 33 33 H 1.09003 * 109.46808 * 89.97636 * 5 4 3 34 34 H 1.09000 * 109.47590 * 209.98072 * 5 4 3 35 35 H 1.09003 * 109.47249 * 329.98029 * 5 4 3 36 36 H 1.08996 * 109.58239 * 6.60454 * 12 11 9 37 37 H 1.09005 * 109.58559 * 246.18296 * 12 11 9 38 38 H 1.09001 * 109.49626 * 294.68000 * 13 12 11 39 39 H 1.08995 * 109.52005 * 174.60372 * 13 12 11 40 40 H 1.09000 * 109.45538 * 178.61204 * 14 13 12 41 41 H 1.08995 * 109.45672 * 58.65899 * 14 13 12 42 42 H 1.09001 * 109.49284 * 301.41305 * 15 14 13 43 43 H 1.08998 * 109.52451 * 181.33692 * 15 14 13 44 44 H 1.09001 * 109.47507 * 305.67381 * 20 18 16 45 45 H 1.08998 * 109.47256 * 65.67617 * 20 18 16 46 46 H 1.08997 * 109.47070 * 185.67435 * 20 18 16 47 47 H 0.97007 * 119.99631 * 335.00321 * 21 18 16 48 48 H 0.97006 * 120.00297 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0552 0.0000 4 7 3.6111 0.6475 -0.0006 5 6 4.7763 1.5355 -0.0013 6 6 3.6480 -0.6962 0.0043 7 9 4.7577 -1.4667 0.0101 8 6 2.3375 -1.1444 -0.0005 9 6 1.8931 -2.5474 0.0002 10 8 1.7085 -3.1273 -1.0530 11 7 1.6907 -3.1896 1.1676 12 6 1.8085 -2.4744 2.4456 13 6 0.5224 -2.6875 3.2502 14 6 0.2567 -4.1880 3.3918 15 6 0.0671 -4.8073 2.0052 16 6 1.3480 -4.6183 1.1865 17 1 2.1600 -5.1849 1.6423 18 6 1.1195 -5.1099 -0.2443 19 1 1.9917 -4.8728 -0.8536 20 6 0.9006 -6.6240 -0.2344 21 7 -0.0618 -4.4493 -0.8048 22 6 -0.1883 -4.3077 -2.1609 23 1 0.5827 -4.6833 -2.8172 24 6 -1.3104 -3.6869 -2.6922 25 7 -2.2502 -3.2295 -1.8924 26 14 -1.4866 -3.5006 -4.5426 27 1 -2.1878 -4.6873 -5.0950 28 1 -2.2717 -2.2768 -4.8443 29 1 -0.1403 -3.3895 -5.1593 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 5.0655 1.7562 1.0262 34 1 5.6046 1.0477 -0.5152 35 1 4.5257 2.4634 -0.5155 36 1 1.9495 -1.4102 2.2571 37 1 2.6586 -2.8642 3.0055 38 1 -0.3132 -2.2174 2.7318 39 1 0.6335 -2.2428 4.2391 40 1 -0.6446 -4.3428 3.9850 41 1 1.1036 -4.6615 3.8883 42 1 -0.7642 -4.3172 1.4985 43 1 -0.1456 -5.8714 2.1075 44 1 1.7345 -7.1085 0.2736 45 1 -0.0270 -6.8536 0.2899 46 1 0.8383 -6.9888 -1.2596 47 1 -0.7545 -4.1121 -0.2152 48 1 -3.0342 -2.7953 -2.2637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265091761.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:44 Heat of formation + Delta-G solvation = 34.545847 kcal Electronic energy + Delta-G solvation = -32507.097780 eV Core-core repulsion = 28321.777466 eV Total energy + Delta-G solvation = -4185.320314 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.39099 -42.48627 -41.13907 -38.06955 -36.82168 -35.14029 -34.01372 -33.56592 -31.39393 -31.15073 -30.38246 -29.63818 -27.31757 -25.97920 -25.57196 -24.62583 -23.30785 -21.83655 -21.63392 -21.27676 -19.91065 -19.02265 -18.51745 -17.95317 -17.43774 -17.10602 -16.91405 -16.30425 -15.85057 -15.71121 -15.60832 -15.41452 -15.29432 -14.84682 -14.60756 -14.52991 -14.32484 -14.20113 -14.02946 -13.72507 -13.68321 -13.43631 -13.27521 -13.15539 -12.99769 -12.97251 -12.77570 -12.59129 -12.30431 -12.10405 -11.99043 -11.85704 -11.65983 -11.50298 -11.30365 -11.18649 -10.73349 -10.35822 -9.99895 -9.54908 -9.27760 -8.52710 -7.68702 -4.85580 0.28786 0.94503 1.18667 1.45198 1.46073 1.53999 1.87090 2.29851 2.71249 2.79168 3.32326 3.64143 3.76237 3.83980 3.98152 4.04707 4.10993 4.21437 4.24669 4.28939 4.32017 4.34975 4.41099 4.46431 4.57924 4.66783 4.68398 4.74716 4.81380 4.88294 4.89189 4.96159 5.00718 5.08793 5.14378 5.20358 5.31646 5.33955 5.38885 5.51387 5.60446 5.65921 5.71140 5.74512 6.01193 6.29257 6.54517 6.71187 7.58085 7.66721 8.39285 8.65571 9.55747 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.009424 B = 0.005956 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.500535 B = 4699.629154 C = 6134.482858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.126 3.874 3 N -0.281 5.281 4 N -0.368 5.368 5 C 0.083 3.917 6 C 0.280 3.720 7 F -0.088 7.088 8 C -0.289 4.289 9 C 0.569 3.431 10 O -0.497 6.497 11 N -0.599 5.599 12 C 0.114 3.886 13 C -0.130 4.130 14 C -0.108 4.108 15 C -0.126 4.126 16 C 0.149 3.851 17 H 0.093 0.907 18 C 0.165 3.835 19 H 0.052 0.948 20 C -0.159 4.159 21 N -0.700 5.700 22 C -0.152 4.152 23 H 0.046 0.954 24 C -0.086 4.086 25 N -0.972 5.972 26 Si 0.942 3.058 27 H -0.294 1.294 28 H -0.300 1.300 29 H -0.291 1.291 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.040 0.960 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.047 0.953 46 H 0.028 0.972 47 H 0.371 0.629 48 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.529 6.483 15.888 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.040 4.040 3 N -0.105 5.105 4 N -0.153 5.153 5 C -0.056 4.056 6 C 0.132 3.868 7 F -0.067 7.067 8 C -0.305 4.305 9 C 0.353 3.647 10 O -0.370 6.370 11 N -0.334 5.334 12 C -0.008 4.008 13 C -0.168 4.168 14 C -0.146 4.146 15 C -0.165 4.165 16 C 0.046 3.954 17 H 0.110 0.890 18 C 0.056 3.944 19 H 0.070 0.930 20 C -0.219 4.219 21 N -0.341 5.341 22 C -0.286 4.286 23 H 0.064 0.936 24 C -0.276 4.276 25 N -0.627 5.627 26 Si 0.776 3.224 27 H -0.222 1.222 28 H -0.227 1.227 29 H -0.217 1.217 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.047 0.953 47 H 0.205 0.795 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 14.740 7.494 15.109 22.399 hybrid contribution -0.383 -0.651 -1.544 1.719 sum 14.358 6.843 13.565 20.904 Atomic orbital electron populations 1.20198 0.85074 1.03463 1.04082 1.22258 0.97424 0.88191 0.96085 1.77223 0.84953 1.20833 1.27456 1.48985 1.07633 1.02361 1.56365 1.22483 0.82459 0.94502 1.06125 1.17646 0.82861 0.82551 1.03712 1.91630 1.49352 1.71766 1.93962 1.19949 0.91063 0.95978 1.23550 1.17417 0.78336 0.84575 0.84324 1.91090 1.47522 1.65734 1.32662 1.47864 1.69956 1.09984 1.05620 1.21744 0.98791 0.96796 0.83452 1.21891 0.96819 0.97353 1.00713 1.21471 1.02789 0.94961 0.95371 1.21901 0.96737 1.01552 0.96278 1.21579 0.97248 0.80292 0.96306 0.88970 1.20761 0.91495 0.90292 0.91847 0.92991 1.22407 1.01008 0.98238 1.00228 1.42427 1.20482 1.68216 1.02955 1.19117 0.99384 1.25146 0.84910 0.93576 1.24985 0.98527 1.04771 0.99303 1.69740 1.11033 1.48890 1.33071 0.85536 0.76373 0.76441 0.84023 1.22248 1.22731 1.21699 0.88230 0.89639 0.92497 0.87523 0.87585 0.87083 0.90985 0.89790 0.93513 0.88289 0.90953 0.89920 0.94125 0.90260 0.91220 0.93377 0.95283 0.79470 0.95133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.39 10.28 71.24 0.73 -1.66 16 2 C 0.13 4.31 7.02 43.55 0.31 4.62 16 3 N -0.28 -8.54 12.49 -46.64 -0.58 -9.12 16 4 N -0.37 -9.35 3.98 -368.86 -1.47 -10.82 16 5 C 0.08 1.10 11.43 127.77 1.46 2.56 16 6 C 0.28 8.40 8.70 84.36 0.73 9.13 16 7 F -0.09 -2.44 17.31 44.97 0.78 -1.66 16 8 C -0.29 -10.33 3.96 -20.09 -0.08 -10.41 16 9 C 0.57 23.08 6.92 86.59 0.60 23.68 16 10 O -0.50 -25.30 9.82 -4.14 -0.04 -25.34 16 11 N -0.60 -19.69 2.97 -799.15 -2.37 -22.06 16 12 C 0.11 2.75 6.32 86.36 0.55 3.29 16 13 C -0.13 -2.78 6.08 30.67 0.19 -2.60 16 14 C -0.11 -2.29 5.88 30.62 0.18 -2.11 16 15 C -0.13 -3.73 4.87 30.67 0.15 -3.58 16 16 C 0.15 4.83 2.72 44.97 0.12 4.95 16 17 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 18 C 0.16 6.91 1.88 44.99 0.08 6.99 16 19 H 0.05 2.51 5.92 -5.84 -0.03 2.47 16 20 C -0.16 -5.82 9.14 71.98 0.66 -5.17 16 21 N -0.70 -36.29 3.60 -322.96 -1.16 -37.45 16 22 C -0.15 -9.06 7.96 84.03 0.67 -8.40 16 23 H 0.05 2.86 7.83 -2.91 -0.02 2.83 16 24 C -0.09 -5.27 5.50 84.86 0.47 -4.81 16 25 N -0.97 -61.33 13.06 21.65 0.28 -61.05 16 26 Si 0.94 51.00 29.55 68.60 2.03 53.03 16 27 H -0.29 -15.58 7.11 99.48 0.71 -14.87 16 28 H -0.30 -16.25 7.11 99.48 0.71 -15.54 16 29 H -0.29 -15.66 7.11 99.48 0.71 -14.96 16 30 H 0.10 2.88 8.14 -2.39 -0.02 2.87 16 31 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.06 2.55 8.01 -2.39 -0.02 2.53 16 33 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.80 6.19 -2.39 -0.01 1.78 16 37 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.51 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.04 1.55 6.05 -2.39 -0.01 1.54 16 43 H 0.08 2.18 7.03 -2.39 -0.02 2.16 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.05 1.73 7.03 -2.39 -0.02 1.72 16 46 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.37 20.32 5.63 -92.70 -0.52 19.80 16 48 H 0.24 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -77.77 380.59 4.71 -73.05 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.44 Total: 24.93 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 6.81 Total: 16.50 kcal Atomic # 7 Polarization: -135.21 SS G_CDS: -5.30 Total: -140.51 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.04 Total: -25.34 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.78 Total: -1.66 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.03 Total: 53.03 kcal Total: -77.77 4.71 -73.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265091761.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.601 kcal (2) G-P(sol) polarization free energy of solvation -77.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds