Wall clock time and date at job start Tue Mar 31 2020 22:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30379 * 125.96927 * 2 1 4 4 N 1.39913 * 109.02291 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.73956 * 179.97438 * 4 3 2 6 6 C 1.34412 * 108.51633 * 0.26641 * 4 3 2 7 7 F 1.35103 * 126.34356 * 179.73541 * 6 4 3 8 8 C 1.38505 * 107.31199 * 359.58103 * 6 4 3 9 9 C 1.47160 * 126.45960 * 180.12303 * 8 6 4 10 10 O 1.21638 * 120.00230 * 270.34133 * 9 8 6 11 11 N 1.34773 * 120.00161 * 90.34691 * 9 8 6 12 12 C 1.46923 * 120.63108 * 354.04355 * 11 9 8 13 13 C 1.52759 * 109.00985 * 233.58742 * 12 11 9 14 14 C 1.53043 * 109.38404 * 305.58350 * 13 12 11 15 15 C 1.53040 * 109.53273 * 61.24213 * 14 13 12 16 16 C 1.46929 * 120.63489 * 174.32695 * 11 9 8 17 17 H 1.09001 * 109.58694 * 246.15852 * 16 11 9 18 18 C 1.53009 * 109.58553 * 6.57624 * 16 11 9 19 19 H 1.09002 * 109.46679 * 52.66961 * 18 16 11 20 20 C 1.52993 * 109.47063 * 172.67118 * 18 16 11 21 21 N 1.46507 * 109.46887 * 292.67705 * 18 16 11 22 22 C 1.36935 * 119.99519 * 162.30374 * 21 18 16 23 23 H 1.07994 * 120.00373 * 359.97438 * 22 21 18 24 24 C 1.38813 * 119.99813 * 179.97438 * 22 21 18 25 25 N 1.31626 * 119.99961 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00191 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46989 * 89.99822 * 26 24 22 28 28 H 1.48500 * 109.47456 * 210.00095 * 26 24 22 29 29 H 1.48505 * 109.47269 * 329.99951 * 26 24 22 30 30 H 1.09001 * 109.46650 * 90.02423 * 1 2 3 31 31 H 1.08999 * 109.47226 * 210.01992 * 1 2 3 32 32 H 1.09002 * 109.47236 * 330.03014 * 1 2 3 33 33 H 1.09003 * 109.46632 * 90.03318 * 5 4 3 34 34 H 1.09003 * 109.46702 * 210.02384 * 5 4 3 35 35 H 1.08998 * 109.47333 * 330.02876 * 5 4 3 36 36 H 1.09004 * 109.58396 * 353.41820 * 12 11 9 37 37 H 1.08994 * 109.59437 * 113.84440 * 12 11 9 38 38 H 1.09000 * 109.56810 * 185.55075 * 13 12 11 39 39 H 1.09003 * 109.36424 * 65.49884 * 13 12 11 40 40 H 1.08993 * 109.46353 * 301.22378 * 14 13 12 41 41 H 1.09003 * 109.45056 * 181.25145 * 14 13 12 42 42 H 1.09005 * 109.49614 * 178.68735 * 15 14 13 43 43 H 1.08997 * 109.50047 * 58.58726 * 15 14 13 44 44 H 1.08991 * 109.47566 * 293.77181 * 20 18 16 45 45 H 1.09007 * 109.47155 * 53.77566 * 20 18 16 46 46 H 1.09006 * 109.46894 * 173.76522 * 20 18 16 47 47 H 0.96999 * 119.99655 * 342.29872 * 21 18 16 48 48 H 0.97000 * 120.00200 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2728 1.0552 0.0000 4 7 3.6111 0.6474 0.0006 5 6 4.7763 1.5355 0.0002 6 6 3.6480 -0.6962 -0.0050 7 9 4.7577 -1.4667 -0.0113 8 6 2.3375 -1.1445 0.0006 9 6 1.8931 -2.5474 0.0000 10 8 1.7102 -3.1271 -1.0536 11 7 1.6886 -3.1900 1.1669 12 6 2.0283 -2.5485 2.4443 13 6 2.9454 -3.4766 3.2388 14 6 2.2806 -4.8478 3.3809 15 6 2.0597 -5.4556 1.9939 16 6 1.1274 -4.5477 1.1856 17 1 0.1417 -4.5293 1.6505 18 6 1.0124 -5.0750 -0.2462 19 1 1.9750 -4.9761 -0.7481 20 6 0.6021 -6.5485 -0.2156 21 7 0.0017 -4.3014 -0.9718 22 6 -0.0308 -4.3311 -2.3404 23 1 0.6887 -4.9244 -2.8850 24 6 -0.9888 -3.5986 -3.0279 25 7 -1.8654 -2.8751 -2.3643 26 14 -1.0328 -3.6385 -4.8949 27 1 -1.9143 -4.7454 -5.3457 28 1 -1.5592 -2.3472 -5.4054 29 1 0.3401 -3.8548 -5.4180 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3634 0.8903 0.5134 33 1 5.0654 1.7559 1.0279 34 1 5.6048 1.0476 -0.5135 35 1 4.5258 2.4634 -0.5138 36 1 2.5408 -1.6054 2.2546 37 1 1.1177 -2.3637 3.0141 38 1 3.1237 -3.0546 4.2278 39 1 3.8938 -3.5848 2.7125 40 1 1.3209 -4.7356 3.8853 41 1 2.9242 -5.5042 3.9667 42 1 1.6075 -6.4421 2.0968 43 1 3.0163 -5.5452 1.4793 44 1 1.4042 -7.1400 0.2257 45 1 -0.3032 -6.6613 0.3810 46 1 0.4126 -6.8941 -1.2320 47 1 -0.6443 -3.7683 -0.4826 48 1 -2.5351 -2.3635 -2.8447 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265091762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:49 Heat of formation + Delta-G solvation = 58.532669 kcal Electronic energy + Delta-G solvation = -32377.320632 eV Core-core repulsion = 28193.040465 eV Total energy + Delta-G solvation = -4184.280167 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.13884 -41.18531 -39.74171 -36.69639 -35.18932 -33.91754 -32.40471 -32.14509 -30.10535 -29.79818 -29.16766 -27.75059 -26.13065 -24.69483 -24.14123 -22.69385 -22.01625 -20.70055 -20.14004 -19.91984 -18.93803 -17.46285 -16.75784 -16.61630 -16.18305 -15.80649 -15.43757 -14.75553 -14.61074 -14.40509 -14.21627 -14.05674 -13.62365 -13.54940 -13.29471 -13.25574 -13.13093 -12.96295 -12.71198 -12.48788 -12.12562 -12.06993 -11.96434 -11.92019 -11.84833 -11.27985 -11.08458 -10.84601 -10.77834 -10.66125 -10.54549 -10.52981 -10.32925 -10.06930 -9.65279 -9.36388 -9.13184 -8.64413 -8.56444 -8.09050 -7.86138 -6.38909 -5.43338 -2.63252 1.55403 2.06627 2.57634 3.41663 3.60957 3.61713 3.66802 3.69101 4.02031 4.45375 4.83457 4.87523 4.91238 4.92866 4.98287 5.03353 5.17512 5.25125 5.28782 5.41939 5.52029 5.57689 5.62311 5.71374 5.85081 5.91555 5.94801 5.98354 6.04859 6.10454 6.15161 6.17060 6.20183 6.21957 6.29273 6.43144 6.51231 6.56402 6.73748 6.86307 6.86542 7.04890 7.13155 7.46326 7.58838 8.02398 8.12062 8.73787 9.15316 9.86263 10.41163 10.77530 11.80972 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.009085 B = 0.006174 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.289930 B = 4533.912425 C = 6539.659420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.139 3.861 3 N -0.282 5.282 4 N -0.383 5.383 5 C 0.097 3.903 6 C 0.269 3.731 7 F -0.095 7.095 8 C -0.256 4.256 9 C 0.552 3.448 10 O -0.416 6.416 11 N -0.609 5.609 12 C 0.118 3.882 13 C -0.134 4.134 14 C -0.117 4.117 15 C -0.128 4.128 16 C 0.149 3.851 17 H 0.065 0.935 18 C 0.179 3.821 19 H 0.063 0.937 20 C -0.168 4.168 21 N -0.692 5.692 22 C -0.176 4.176 23 H 0.062 0.938 24 C -0.025 4.025 25 N -0.944 5.944 26 Si 0.894 3.106 27 H -0.297 1.297 28 H -0.297 1.297 29 H -0.288 1.288 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.042 0.958 46 H 0.056 0.944 47 H 0.377 0.623 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.491 4.535 14.392 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.028 4.028 3 N -0.105 5.105 4 N -0.169 5.169 5 C -0.043 4.043 6 C 0.123 3.877 7 F -0.074 7.074 8 C -0.272 4.272 9 C 0.334 3.666 10 O -0.281 6.281 11 N -0.346 5.346 12 C -0.006 4.006 13 C -0.172 4.172 14 C -0.155 4.155 15 C -0.167 4.167 16 C 0.046 3.954 17 H 0.083 0.917 18 C 0.070 3.930 19 H 0.081 0.919 20 C -0.229 4.229 21 N -0.332 5.332 22 C -0.308 4.308 23 H 0.080 0.920 24 C -0.218 4.218 25 N -0.596 5.596 26 Si 0.728 3.272 27 H -0.225 1.225 28 H -0.224 1.224 29 H -0.214 1.214 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.210 0.790 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.653 5.510 13.535 19.331 hybrid contribution 0.263 -0.559 -0.875 1.071 sum 12.916 4.952 12.660 18.752 Atomic orbital electron populations 1.20278 0.84565 1.03177 1.04987 1.22364 0.97451 0.88034 0.94902 1.77271 0.83995 1.21403 1.27826 1.48570 1.07142 1.02475 1.58730 1.21930 0.84020 0.94705 1.03695 1.17830 0.83432 0.81733 1.04656 1.91611 1.49939 1.71777 1.94119 1.20058 0.89631 0.96784 1.20698 1.17079 0.81041 0.84010 0.84480 1.91291 1.41842 1.64536 1.30425 1.47708 1.65896 1.16087 1.04957 1.21360 0.98293 0.95703 0.85221 1.21842 0.99278 0.96290 0.99809 1.21502 1.00585 0.96064 0.97307 1.22005 1.00491 0.98988 0.95251 1.21516 0.95179 0.80535 0.98213 0.91659 1.20462 0.95199 0.89136 0.88234 0.91929 1.22563 0.99395 0.99321 1.01616 1.42320 1.33433 1.53990 1.03440 1.18983 1.08882 1.20269 0.82639 0.92030 1.24482 0.99587 1.01254 0.96526 1.69625 1.21086 1.35774 1.33099 0.86332 0.76947 0.76422 0.87501 1.22548 1.22363 1.21383 0.88694 0.89566 0.91070 0.90330 0.89496 0.88536 0.90988 0.92148 0.91487 0.91833 0.91933 0.92228 0.90698 0.91690 0.94553 0.93928 0.92477 0.78969 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.28 36.00 0.37 -0.83 16 2 C 0.14 2.42 7.26 -82.00 -0.60 1.83 16 3 N -0.28 -4.58 12.49 33.91 0.42 -4.16 16 4 N -0.38 -5.44 3.98 -67.93 -0.27 -5.71 16 5 C 0.10 0.85 11.43 59.85 0.68 1.53 16 6 C 0.27 4.32 8.40 -16.32 -0.14 4.18 16 7 F -0.10 -1.44 17.31 2.25 0.04 -1.40 16 8 C -0.26 -4.64 4.00 -104.97 -0.42 -5.06 16 9 C 0.55 11.04 6.90 -12.64 -0.09 10.95 16 10 O -0.42 -10.24 9.71 5.24 0.05 -10.19 16 11 N -0.61 -10.12 2.98 -166.83 -0.50 -10.61 16 12 C 0.12 1.54 6.29 -3.93 -0.02 1.51 16 13 C -0.13 -1.44 6.06 -26.83 -0.16 -1.61 16 14 C -0.12 -1.25 5.89 -26.69 -0.16 -1.41 16 15 C -0.13 -1.68 4.64 -26.61 -0.12 -1.80 16 16 C 0.15 2.48 2.58 -67.59 -0.17 2.30 16 17 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 18 C 0.18 3.69 1.78 -67.93 -0.12 3.57 16 19 H 0.06 1.45 6.46 -51.93 -0.34 1.11 16 20 C -0.17 -3.11 8.68 37.15 0.32 -2.79 16 21 N -0.69 -17.43 3.13 -53.42 -0.17 -17.60 16 22 C -0.18 -5.03 7.96 -15.06 -0.12 -5.15 16 23 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.03 -0.75 5.50 -17.43 -0.10 -0.85 16 25 N -0.94 -28.64 13.06 55.49 0.72 -27.91 16 26 Si 0.89 23.88 29.55 -169.99 -5.02 18.85 16 27 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 28 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 29 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 30 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 31 H 0.09 1.52 8.01 -51.93 -0.42 1.11 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.96 6.16 -51.93 -0.32 0.64 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.91 6.84 -51.93 -0.36 0.56 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.04 0.56 6.86 -51.93 -0.36 0.20 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 1.17 7.98 -51.93 -0.41 0.75 16 47 H 0.38 10.12 7.74 -40.82 -0.32 9.81 16 48 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -33.76 383.21 -7.34 -41.11 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.55 Total: 5.46 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -0.84 Total: 6.39 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: 0.21 Total: -65.99 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.05 Total: -10.19 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.02 Total: 18.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.76 -7.34 -41.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265091762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.639 kcal (2) G-P(sol) polarization free energy of solvation -33.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds