Wall clock time and date at job start Tue Mar 31 2020 22:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30379 * 125.96927 * 2 1 4 4 N 1.39913 * 109.02291 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.73956 * 179.97438 * 4 3 2 6 6 C 1.34412 * 108.51633 * 0.26641 * 4 3 2 7 7 F 1.35103 * 126.34356 * 179.73541 * 6 4 3 8 8 C 1.38505 * 107.31199 * 359.58103 * 6 4 3 9 9 C 1.47160 * 126.45960 * 180.12303 * 8 6 4 10 10 O 1.21638 * 120.00230 * 270.34133 * 9 8 6 11 11 N 1.34773 * 120.00161 * 90.34691 * 9 8 6 12 12 C 1.46923 * 120.63108 * 354.04355 * 11 9 8 13 13 C 1.52759 * 109.00985 * 233.58742 * 12 11 9 14 14 C 1.53043 * 109.38404 * 305.58350 * 13 12 11 15 15 C 1.53040 * 109.53273 * 61.24213 * 14 13 12 16 16 C 1.46929 * 120.63489 * 174.32695 * 11 9 8 17 17 H 1.09001 * 109.58694 * 246.15852 * 16 11 9 18 18 C 1.53009 * 109.58553 * 6.57624 * 16 11 9 19 19 H 1.09002 * 109.46679 * 52.66961 * 18 16 11 20 20 C 1.52993 * 109.47063 * 172.67118 * 18 16 11 21 21 N 1.46507 * 109.46887 * 292.67705 * 18 16 11 22 22 C 1.36935 * 119.99519 * 162.30374 * 21 18 16 23 23 H 1.07994 * 120.00373 * 359.97438 * 22 21 18 24 24 C 1.38813 * 119.99813 * 179.97438 * 22 21 18 25 25 N 1.31626 * 119.99961 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00191 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46989 * 89.99822 * 26 24 22 28 28 H 1.48500 * 109.47456 * 210.00095 * 26 24 22 29 29 H 1.48505 * 109.47269 * 329.99951 * 26 24 22 30 30 H 1.09001 * 109.46650 * 90.02423 * 1 2 3 31 31 H 1.08999 * 109.47226 * 210.01992 * 1 2 3 32 32 H 1.09002 * 109.47236 * 330.03014 * 1 2 3 33 33 H 1.09003 * 109.46632 * 90.03318 * 5 4 3 34 34 H 1.09003 * 109.46702 * 210.02384 * 5 4 3 35 35 H 1.08998 * 109.47333 * 330.02876 * 5 4 3 36 36 H 1.09004 * 109.58396 * 353.41820 * 12 11 9 37 37 H 1.08994 * 109.59437 * 113.84440 * 12 11 9 38 38 H 1.09000 * 109.56810 * 185.55075 * 13 12 11 39 39 H 1.09003 * 109.36424 * 65.49884 * 13 12 11 40 40 H 1.08993 * 109.46353 * 301.22378 * 14 13 12 41 41 H 1.09003 * 109.45056 * 181.25145 * 14 13 12 42 42 H 1.09005 * 109.49614 * 178.68735 * 15 14 13 43 43 H 1.08997 * 109.50047 * 58.58726 * 15 14 13 44 44 H 1.08991 * 109.47566 * 293.77181 * 20 18 16 45 45 H 1.09007 * 109.47155 * 53.77566 * 20 18 16 46 46 H 1.09006 * 109.46894 * 173.76522 * 20 18 16 47 47 H 0.96999 * 119.99655 * 342.29872 * 21 18 16 48 48 H 0.97000 * 120.00200 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2728 1.0552 0.0000 4 7 3.6111 0.6474 0.0006 5 6 4.7763 1.5355 0.0002 6 6 3.6480 -0.6962 -0.0050 7 9 4.7577 -1.4667 -0.0113 8 6 2.3375 -1.1445 0.0006 9 6 1.8931 -2.5474 0.0000 10 8 1.7102 -3.1271 -1.0536 11 7 1.6886 -3.1900 1.1669 12 6 2.0283 -2.5485 2.4443 13 6 2.9454 -3.4766 3.2388 14 6 2.2806 -4.8478 3.3809 15 6 2.0597 -5.4556 1.9939 16 6 1.1274 -4.5477 1.1856 17 1 0.1417 -4.5293 1.6505 18 6 1.0124 -5.0750 -0.2462 19 1 1.9750 -4.9761 -0.7481 20 6 0.6021 -6.5485 -0.2156 21 7 0.0017 -4.3014 -0.9718 22 6 -0.0308 -4.3311 -2.3404 23 1 0.6887 -4.9244 -2.8850 24 6 -0.9888 -3.5986 -3.0279 25 7 -1.8654 -2.8751 -2.3643 26 14 -1.0328 -3.6385 -4.8949 27 1 -1.9143 -4.7454 -5.3457 28 1 -1.5592 -2.3472 -5.4054 29 1 0.3401 -3.8548 -5.4180 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5141 32 1 -0.3634 0.8903 0.5134 33 1 5.0654 1.7559 1.0279 34 1 5.6048 1.0476 -0.5135 35 1 4.5258 2.4634 -0.5138 36 1 2.5408 -1.6054 2.2546 37 1 1.1177 -2.3637 3.0141 38 1 3.1237 -3.0546 4.2278 39 1 3.8938 -3.5848 2.7125 40 1 1.3209 -4.7356 3.8853 41 1 2.9242 -5.5042 3.9667 42 1 1.6075 -6.4421 2.0968 43 1 3.0163 -5.5452 1.4793 44 1 1.4042 -7.1400 0.2257 45 1 -0.3032 -6.6613 0.3810 46 1 0.4126 -6.8941 -1.2320 47 1 -0.6443 -3.7683 -0.4826 48 1 -2.5351 -2.3635 -2.8447 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265091762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:48 Heat of formation + Delta-G solvation = 36.713039 kcal Electronic energy + Delta-G solvation = -32378.266802 eV Core-core repulsion = 28193.040465 eV Total energy + Delta-G solvation = -4185.226337 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.39142 -42.46274 -41.11717 -38.04762 -36.86236 -35.12876 -34.09334 -33.55800 -31.49500 -31.30487 -30.37909 -29.36922 -27.32196 -26.10904 -25.70420 -24.16914 -23.29812 -21.96528 -21.49008 -21.26659 -20.31116 -18.97273 -18.36694 -17.95979 -17.48616 -17.05419 -16.80885 -16.64296 -15.73617 -15.68228 -15.53566 -15.41530 -15.22351 -14.82112 -14.66678 -14.46303 -14.40778 -14.18238 -14.08848 -13.71168 -13.66198 -13.51482 -13.34841 -13.23895 -12.99556 -12.93718 -12.77092 -12.52082 -12.38330 -12.11322 -11.91780 -11.90233 -11.68036 -11.56531 -11.34845 -11.16294 -10.70215 -10.35038 -10.03385 -9.56836 -9.33995 -8.41340 -7.68818 -4.84973 0.29306 0.95450 1.20870 1.45113 1.46512 1.53680 1.93380 2.29734 2.70235 2.80201 3.32946 3.63670 3.75945 3.84601 3.90249 3.98230 4.15264 4.20866 4.24109 4.27780 4.31475 4.35145 4.42137 4.47398 4.56860 4.65326 4.70703 4.77616 4.81488 4.82870 4.90590 4.96662 4.99804 5.10062 5.12720 5.15922 5.22763 5.30742 5.36771 5.47371 5.53609 5.62778 5.70286 5.71777 6.00509 6.30379 6.52383 6.72446 7.58048 7.68179 8.35182 8.60060 9.55492 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.009085 B = 0.006174 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.289930 B = 4533.912425 C = 6539.659420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.124 3.876 3 N -0.282 5.282 4 N -0.368 5.368 5 C 0.083 3.917 6 C 0.276 3.724 7 F -0.089 7.089 8 C -0.285 4.285 9 C 0.554 3.446 10 O -0.481 6.481 11 N -0.604 5.604 12 C 0.113 3.887 13 C -0.127 4.127 14 C -0.112 4.112 15 C -0.121 4.121 16 C 0.151 3.849 17 H 0.065 0.935 18 C 0.178 3.822 19 H 0.035 0.965 20 C -0.158 4.158 21 N -0.694 5.694 22 C -0.159 4.159 23 H 0.048 0.952 24 C -0.083 4.083 25 N -0.968 5.968 26 Si 0.944 3.056 27 H -0.292 1.292 28 H -0.301 1.301 29 H -0.289 1.289 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.029 0.971 47 H 0.365 0.635 48 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.458 4.769 17.048 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.041 4.041 3 N -0.106 5.106 4 N -0.154 5.154 5 C -0.056 4.056 6 C 0.128 3.872 7 F -0.069 7.069 8 C -0.301 4.301 9 C 0.337 3.663 10 O -0.351 6.351 11 N -0.340 5.340 12 C -0.009 4.009 13 C -0.165 4.165 14 C -0.149 4.149 15 C -0.160 4.160 16 C 0.048 3.952 17 H 0.082 0.918 18 C 0.070 3.930 19 H 0.053 0.947 20 C -0.218 4.218 21 N -0.332 5.332 22 C -0.293 4.293 23 H 0.066 0.934 24 C -0.274 4.274 25 N -0.623 5.623 26 Si 0.778 3.222 27 H -0.220 1.220 28 H -0.228 1.228 29 H -0.216 1.216 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.048 0.952 47 H 0.197 0.803 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 14.670 5.735 16.260 22.638 hybrid contribution -0.154 -0.577 -1.611 1.718 sum 14.516 5.158 14.648 21.258 Atomic orbital electron populations 1.20105 0.84855 1.03869 1.03100 1.22315 0.97563 0.88216 0.95995 1.77208 0.84950 1.20881 1.27561 1.48977 1.07634 1.02344 1.56450 1.22475 0.82471 0.94486 1.06124 1.17681 0.82923 0.82570 1.04031 1.91625 1.49417 1.71808 1.94013 1.19991 0.90980 0.96099 1.23065 1.17440 0.79656 0.84658 0.84503 1.91248 1.45366 1.65976 1.32518 1.47811 1.64557 1.16042 1.05593 1.21620 0.99491 0.96106 0.83696 1.21819 0.98041 0.95961 1.00679 1.21497 1.01663 0.96090 0.95662 1.21960 0.98995 0.98891 0.96136 1.21472 0.96415 0.81341 0.96012 0.91751 1.20537 0.92598 0.89923 0.89985 0.94750 1.22399 1.00966 0.97978 1.00420 1.42338 1.34118 1.54379 1.02389 1.19063 1.07282 1.18531 0.84403 0.93426 1.25017 1.00404 1.02334 0.99620 1.69744 1.21796 1.37002 1.33729 0.85514 0.76576 0.76075 0.84029 1.22021 1.22849 1.21587 0.91825 0.91069 0.88126 0.87463 0.87695 0.87120 0.91241 0.90947 0.88450 0.92609 0.91005 0.89723 0.89225 0.92485 0.90975 0.93204 0.95199 0.80281 0.95130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.13 10.28 71.24 0.73 -1.39 16 2 C 0.12 4.40 7.26 43.55 0.32 4.72 16 3 N -0.28 -8.90 12.49 -46.64 -0.58 -9.48 16 4 N -0.37 -9.78 3.98 -368.84 -1.47 -11.25 16 5 C 0.08 1.18 11.43 127.77 1.46 2.64 16 6 C 0.28 8.61 8.40 84.36 0.71 9.32 16 7 F -0.09 -2.60 17.31 44.97 0.78 -1.83 16 8 C -0.29 -10.50 4.00 -20.09 -0.08 -10.58 16 9 C 0.55 22.88 6.90 86.59 0.60 23.48 16 10 O -0.48 -24.94 9.71 -4.15 -0.04 -24.98 16 11 N -0.60 -20.03 2.98 -799.99 -2.38 -22.41 16 12 C 0.11 2.75 6.29 86.22 0.54 3.29 16 13 C -0.13 -2.30 6.06 30.53 0.19 -2.12 16 14 C -0.11 -1.95 5.89 30.62 0.18 -1.77 16 15 C -0.12 -2.87 4.64 30.67 0.14 -2.73 16 16 C 0.15 4.94 2.58 44.98 0.12 5.06 16 17 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 18 C 0.18 7.48 1.78 44.99 0.08 7.56 16 19 H 0.03 1.66 6.46 -2.39 -0.02 1.65 16 20 C -0.16 -5.77 8.68 71.98 0.62 -5.15 16 21 N -0.69 -36.46 3.13 -322.93 -1.01 -37.48 16 22 C -0.16 -9.52 7.96 84.03 0.67 -8.86 16 23 H 0.05 2.92 7.83 -2.91 -0.02 2.90 16 24 C -0.08 -5.12 5.50 84.86 0.47 -4.66 16 25 N -0.97 -61.13 13.06 21.65 0.28 -60.85 16 26 Si 0.94 50.88 29.55 68.60 2.03 52.91 16 27 H -0.29 -15.32 7.11 99.48 0.71 -14.62 16 28 H -0.30 -16.31 7.11 99.48 0.71 -15.60 16 29 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 30 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.07 2.65 8.01 -2.39 -0.02 2.63 16 32 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.74 6.16 -2.39 -0.01 1.73 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 1.88 6.84 -2.38 -0.02 1.86 16 43 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.07 2.10 6.86 -2.39 -0.02 2.08 16 45 H 0.05 1.73 8.14 -2.38 -0.02 1.72 16 46 H 0.03 1.23 7.98 -2.38 -0.02 1.21 16 47 H 0.37 20.55 7.74 -92.71 -0.72 19.83 16 48 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -77.77 383.21 4.60 -73.17 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.26 Total: 23.38 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 6.74 Total: 18.81 kcal Atomic # 7 Polarization: -136.31 SS G_CDS: -5.16 Total: -141.47 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.04 Total: -24.98 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.78 Total: -1.83 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.03 Total: 52.91 kcal Total: -77.77 4.60 -73.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265091762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.881 kcal (2) G-P(sol) polarization free energy of solvation -77.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds