Wall clock time and date at job start Tue Mar 31 2020 21:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46491 * 109.47135 * 2 1 4 4 C 1.36936 * 120.00262 * 275.30912 * 3 2 1 5 5 H 1.08003 * 119.99947 * 37.58066 * 4 3 2 6 6 C 1.38807 * 120.00166 * 217.57736 * 4 3 2 7 7 N 1.31615 * 120.00390 * 21.43594 * 6 4 3 8 8 Si 1.86802 * 120.00024 * 201.43330 * 6 4 3 9 9 H 1.48500 * 109.47490 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47420 * 120.00441 * 8 6 4 11 11 H 1.48502 * 109.47387 * 240.00093 * 8 6 4 12 12 C 1.46504 * 119.99875 * 95.31102 * 3 2 1 13 13 C 1.53001 * 109.47241 * 269.99571 * 12 3 2 14 14 C 1.52999 * 109.46948 * 179.97438 * 13 12 3 15 15 N 1.46500 * 109.46975 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00122 * 180.02562 * 15 14 13 17 17 O 1.21281 * 119.99943 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00294 * 179.97438 * 16 15 14 19 19 C 1.50695 * 109.47442 * 179.97438 * 18 16 15 20 20 C 1.38170 * 120.01816 * 264.72576 * 19 18 16 21 21 C 1.38434 * 120.03116 * 179.79166 * 20 19 18 22 22 F 1.35100 * 119.96900 * 180.25322 * 21 20 19 23 23 C 1.38477 * 120.05812 * 0.46002 * 21 20 19 24 24 C 1.38133 * 120.03298 * 359.79498 * 23 21 20 25 25 C 1.38690 * 120.01091 * 85.00281 * 19 18 16 26 26 O 1.35939 * 120.03467 * 359.97438 * 25 19 18 27 27 C 1.42903 * 117.00508 * 180.02562 * 26 25 19 28 28 H 1.09000 * 109.47479 * 59.99387 * 1 2 3 29 29 H 1.09000 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46755 * 299.99848 * 1 2 3 31 31 H 1.09003 * 109.46755 * 240.00152 * 2 1 3 32 32 H 1.09004 * 109.47164 * 120.00227 * 2 1 3 33 33 H 0.96996 * 120.00560 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.47019 * 149.99949 * 12 3 2 35 35 H 1.09001 * 109.46897 * 30.00143 * 12 3 2 36 36 H 1.09005 * 109.46805 * 60.00247 * 13 12 3 37 37 H 1.08993 * 109.47046 * 300.00304 * 13 12 3 38 38 H 1.09005 * 109.46957 * 60.00595 * 14 13 12 39 39 H 1.08991 * 109.47314 * 300.00514 * 14 13 12 40 40 H 0.97004 * 119.99925 * 0.02562 * 15 14 13 41 41 H 1.09003 * 109.47020 * 300.00766 * 18 16 15 42 42 H 1.09003 * 109.47244 * 59.99662 * 18 16 15 43 43 H 1.07998 * 119.98006 * 0.02562 * 20 19 18 44 44 H 1.08007 * 119.98388 * 179.76852 * 23 21 20 45 45 H 1.07990 * 120.01373 * 179.97438 * 24 23 21 46 46 H 1.08998 * 109.46601 * 300.00562 * 27 26 25 47 47 H 1.09000 * 109.46927 * 59.99933 * 27 26 25 48 48 H 1.09000 * 109.47466 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9278 -1.9627 6 6 3.2111 2.9289 -1.3728 7 7 4.3027 2.7980 -0.6492 8 14 3.0992 4.2796 -2.6582 9 1 1.7775 4.2136 -3.3320 10 1 3.2550 5.6023 -2.0014 11 1 4.1765 4.0965 -3.6638 12 6 2.3732 2.0326 1.2633 13 6 1.1426 2.7382 1.8366 14 6 1.5132 3.4180 3.1563 15 7 0.3347 4.0932 3.7055 16 6 0.4245 4.7641 4.8710 17 8 1.4810 4.8092 5.4648 18 6 -0.7875 5.4591 5.4357 19 6 -0.4227 6.1285 6.7355 20 6 -0.6509 5.4808 7.9345 21 6 -0.3118 6.0938 9.1286 22 9 -0.5308 5.4573 10.2999 23 6 0.2476 7.3605 9.1236 24 6 0.4719 8.0125 7.9267 25 6 0.1370 7.3974 6.7291 26 8 0.3574 8.0379 5.5505 27 6 0.9373 9.3422 5.6193 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.0491 3.4026 -0.7836 34 1 3.1617 2.7640 1.0860 35 1 2.7255 1.2832 1.9721 36 1 0.3541 2.0068 2.0140 37 1 0.7904 3.4876 1.1278 38 1 2.3018 4.1494 2.9793 39 1 1.8652 2.6684 3.8648 40 1 -0.5102 4.0574 3.2303 41 1 -1.1398 6.2084 4.7268 42 1 -1.5761 4.7277 5.6129 43 1 -1.0905 4.4944 7.9399 44 1 0.5082 7.8392 10.0561 45 1 0.9078 9.0005 7.9232 46 1 0.2844 10.0002 6.1927 47 1 1.9106 9.2818 6.1062 48 1 1.0588 9.7395 4.6115 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266095317.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:33 Heat of formation + Delta-G solvation = -84.270007 kcal Electronic energy + Delta-G solvation = -28877.406207 eV Core-core repulsion = 24654.640900 eV Total energy + Delta-G solvation = -4222.765307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.99585 -40.65954 -39.23520 -37.46256 -36.41375 -34.70549 -33.21155 -31.85491 -31.24184 -30.10668 -28.79592 -28.03377 -27.26771 -25.11810 -23.61704 -22.65310 -22.17912 -21.00076 -20.44062 -19.86326 -18.33463 -17.38094 -17.23376 -16.92424 -16.68397 -15.96405 -15.58486 -15.55761 -15.36784 -14.94603 -14.91401 -14.69063 -14.22000 -13.85038 -13.66144 -13.44862 -13.34634 -13.16659 -13.01072 -12.57695 -12.50321 -12.35470 -12.15742 -11.94404 -11.56285 -11.38083 -11.18542 -11.15988 -11.08092 -11.00674 -10.76341 -10.55158 -10.43962 -10.04279 -9.79935 -9.63117 -9.51888 -9.24061 -8.77062 -8.46870 -8.28376 -6.55491 -5.77593 -3.36875 0.85498 0.98783 2.82498 2.97891 3.15881 3.34395 3.43530 3.45576 3.58325 4.03874 4.29286 4.40411 4.47879 4.69918 4.77501 4.88488 4.95809 5.02691 5.11431 5.16539 5.24097 5.27331 5.39909 5.42127 5.61460 5.69673 5.81543 5.84758 5.87916 6.00488 6.03681 6.11426 6.31447 6.37352 6.44670 6.45416 6.51837 6.60638 6.77211 6.83037 6.92247 7.05609 7.11185 7.19179 7.69488 7.72437 7.83500 8.42454 8.53503 9.20755 9.83210 10.42164 11.21752 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.002356 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.840249 B =11880.450655 C =13198.042886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.259 4.259 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.122 3.878 15 N -0.726 5.726 16 C 0.513 3.487 17 O -0.537 6.537 18 C -0.097 4.097 19 C -0.066 4.066 20 C -0.102 4.102 21 C 0.060 3.940 22 F -0.142 7.142 23 C -0.114 4.114 24 C -0.181 4.181 25 C 0.137 3.863 26 O -0.308 6.308 27 C 0.026 3.974 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.033 0.967 33 H 0.254 0.746 34 H 0.095 0.905 35 H 0.024 0.976 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.398 0.602 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.061 10.506 16.912 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.217 1.217 12 C 0.024 3.976 13 C -0.186 4.186 14 C -0.002 4.002 15 N -0.378 5.378 16 C 0.298 3.702 17 O -0.413 6.413 18 C -0.136 4.136 19 C -0.067 4.067 20 C -0.121 4.121 21 C 0.040 3.960 22 F -0.121 7.121 23 C -0.133 4.133 24 C -0.200 4.200 25 C 0.091 3.909 26 O -0.221 6.221 27 C -0.069 4.069 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.112 0.888 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.232 0.768 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.159 0.841 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.136 10.509 17.145 22.987 hybrid contribution -0.345 0.886 -0.497 1.073 sum -11.481 11.395 16.648 23.212 Atomic orbital electron populations 1.22370 1.00181 0.98869 1.01100 1.20845 0.91669 0.87417 0.98702 1.43757 1.76057 1.08199 1.02523 1.19008 1.04608 1.21114 0.94140 0.92317 1.25189 0.94239 1.01338 0.98055 1.70005 1.03196 1.37249 1.42363 0.86375 0.77650 0.82357 0.81282 1.20110 1.21433 1.21655 1.20796 0.94487 0.96633 0.85723 1.22524 1.02296 0.99848 0.93948 1.21455 0.87165 0.96048 0.95525 1.46151 1.14487 1.53917 1.23213 1.20365 0.89911 0.78850 0.81038 1.90712 1.30225 1.60701 1.59709 1.20524 0.97473 1.00685 0.94966 1.18423 1.01953 0.92063 0.94281 1.20811 1.00946 1.00349 0.90026 1.17447 1.04623 0.92632 0.81273 1.91486 1.93085 1.81756 1.45773 1.20885 0.99703 0.93640 0.99047 1.21030 1.06025 1.01739 0.91205 1.18776 0.95213 0.91928 0.85010 1.86110 1.77338 1.31137 1.27485 1.23108 0.97676 0.81727 1.04351 0.93274 0.94651 0.93805 0.93913 0.94856 0.93576 0.88772 0.95717 0.93086 0.91738 0.91644 0.92129 0.76802 0.87292 0.87846 0.84106 0.84560 0.84451 0.92622 0.92409 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 10.21 37.16 0.38 -2.56 16 2 C 0.14 2.93 6.44 -4.05 -0.03 2.90 16 3 N -0.59 -14.21 2.43 -173.24 -0.42 -14.63 16 4 C -0.26 -6.92 9.45 -15.06 -0.14 -7.06 16 5 H 0.06 1.58 7.92 -52.48 -0.42 1.16 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16 7 N -0.89 -25.27 11.47 55.49 0.64 -24.64 16 8 Si 0.89 21.25 29.60 -169.99 -5.03 16.22 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 C 0.15 3.41 5.33 -4.04 -0.02 3.39 16 13 C -0.15 -2.68 5.65 -26.73 -0.15 -2.83 16 14 C 0.12 2.06 5.67 -4.04 -0.02 2.03 16 15 N -0.73 -10.07 5.56 -60.30 -0.33 -10.40 16 16 C 0.51 7.46 7.82 -10.99 -0.09 7.37 16 17 O -0.54 -10.11 16.03 5.56 0.09 -10.02 16 18 C -0.10 -1.01 5.55 -29.04 -0.16 -1.17 16 19 C -0.07 -0.77 4.39 -104.48 -0.46 -1.22 16 20 C -0.10 -1.12 9.65 -39.53 -0.38 -1.51 16 21 C 0.06 0.66 7.30 -39.42 -0.29 0.37 16 22 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 23 C -0.11 -1.10 10.02 -39.53 -0.40 -1.50 16 24 C -0.18 -1.75 9.04 -39.44 -0.36 -2.10 16 25 C 0.14 1.58 6.66 -39.23 -0.26 1.31 16 26 O -0.31 -3.51 9.63 -19.55 -0.19 -3.70 16 27 C 0.03 0.20 9.81 101.05 0.99 1.19 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.75 6.64 -51.93 -0.34 0.40 16 31 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 33 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 34 H 0.09 2.45 5.52 -51.93 -0.29 2.16 16 35 H 0.02 0.54 7.86 -51.93 -0.41 0.13 16 36 H 0.05 0.88 6.64 -51.93 -0.34 0.53 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.40 4.39 8.47 -40.82 -0.35 4.04 16 41 H 0.11 1.00 7.69 -51.93 -0.40 0.60 16 42 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 43 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.14 0.96 6.30 -52.49 -0.33 0.63 16 46 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 47 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 48 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 400.87 15.07 6.04 6.04 Total: -1.00 -32.95 400.87 -8.07 -41.02 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.43 Total: 2.83 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.47 Total: -1.12 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.12 Total: -49.67 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.10 Total: -13.72 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.95 -8.07 -41.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266095317.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.249 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds