Wall clock time and date at job start Tue Mar 31 2020 21:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46491 * 109.47135 * 2 1 4 4 C 1.36936 * 120.00262 * 275.30912 * 3 2 1 5 5 H 1.08003 * 119.99947 * 37.58066 * 4 3 2 6 6 C 1.38807 * 120.00166 * 217.57736 * 4 3 2 7 7 N 1.31615 * 120.00390 * 21.43594 * 6 4 3 8 8 Si 1.86802 * 120.00024 * 201.43330 * 6 4 3 9 9 H 1.48500 * 109.47490 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47420 * 120.00441 * 8 6 4 11 11 H 1.48502 * 109.47387 * 240.00093 * 8 6 4 12 12 C 1.46504 * 119.99875 * 95.31102 * 3 2 1 13 13 C 1.53001 * 109.47241 * 269.99571 * 12 3 2 14 14 C 1.52999 * 109.46948 * 179.97438 * 13 12 3 15 15 N 1.46500 * 109.46975 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00122 * 180.02562 * 15 14 13 17 17 O 1.21281 * 119.99943 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00294 * 179.97438 * 16 15 14 19 19 C 1.50695 * 109.47442 * 179.97438 * 18 16 15 20 20 C 1.38170 * 120.01816 * 264.72576 * 19 18 16 21 21 C 1.38434 * 120.03116 * 179.79166 * 20 19 18 22 22 F 1.35100 * 119.96900 * 180.25322 * 21 20 19 23 23 C 1.38477 * 120.05812 * 0.46002 * 21 20 19 24 24 C 1.38133 * 120.03298 * 359.79498 * 23 21 20 25 25 C 1.38690 * 120.01091 * 85.00281 * 19 18 16 26 26 O 1.35939 * 120.03467 * 359.97438 * 25 19 18 27 27 C 1.42903 * 117.00508 * 180.02562 * 26 25 19 28 28 H 1.09000 * 109.47479 * 59.99387 * 1 2 3 29 29 H 1.09000 * 109.47428 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46755 * 299.99848 * 1 2 3 31 31 H 1.09003 * 109.46755 * 240.00152 * 2 1 3 32 32 H 1.09004 * 109.47164 * 120.00227 * 2 1 3 33 33 H 0.96996 * 120.00560 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.47019 * 149.99949 * 12 3 2 35 35 H 1.09001 * 109.46897 * 30.00143 * 12 3 2 36 36 H 1.09005 * 109.46805 * 60.00247 * 13 12 3 37 37 H 1.08993 * 109.47046 * 300.00304 * 13 12 3 38 38 H 1.09005 * 109.46957 * 60.00595 * 14 13 12 39 39 H 1.08991 * 109.47314 * 300.00514 * 14 13 12 40 40 H 0.97004 * 119.99925 * 0.02562 * 15 14 13 41 41 H 1.09003 * 109.47020 * 300.00766 * 18 16 15 42 42 H 1.09003 * 109.47244 * 59.99662 * 18 16 15 43 43 H 1.07998 * 119.98006 * 0.02562 * 20 19 18 44 44 H 1.08007 * 119.98388 * 179.76852 * 23 21 20 45 45 H 1.07990 * 120.01373 * 179.97438 * 24 23 21 46 46 H 1.08998 * 109.46601 * 300.00562 * 27 26 25 47 47 H 1.09000 * 109.46927 * 59.99933 * 27 26 25 48 48 H 1.09000 * 109.47466 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9278 -1.9627 6 6 3.2111 2.9289 -1.3728 7 7 4.3027 2.7980 -0.6492 8 14 3.0992 4.2796 -2.6582 9 1 1.7775 4.2136 -3.3320 10 1 3.2550 5.6023 -2.0014 11 1 4.1765 4.0965 -3.6638 12 6 2.3732 2.0326 1.2633 13 6 1.1426 2.7382 1.8366 14 6 1.5132 3.4180 3.1563 15 7 0.3347 4.0932 3.7055 16 6 0.4245 4.7641 4.8710 17 8 1.4810 4.8092 5.4648 18 6 -0.7875 5.4591 5.4357 19 6 -0.4227 6.1285 6.7355 20 6 -0.6509 5.4808 7.9345 21 6 -0.3118 6.0938 9.1286 22 9 -0.5308 5.4573 10.2999 23 6 0.2476 7.3605 9.1236 24 6 0.4719 8.0125 7.9267 25 6 0.1370 7.3974 6.7291 26 8 0.3574 8.0379 5.5505 27 6 0.9373 9.3422 5.6193 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.0491 3.4026 -0.7836 34 1 3.1617 2.7640 1.0860 35 1 2.7255 1.2832 1.9721 36 1 0.3541 2.0068 2.0140 37 1 0.7904 3.4876 1.1278 38 1 2.3018 4.1494 2.9793 39 1 1.8652 2.6684 3.8648 40 1 -0.5102 4.0574 3.2303 41 1 -1.1398 6.2084 4.7268 42 1 -1.5761 4.7277 5.6129 43 1 -1.0905 4.4944 7.9399 44 1 0.5082 7.8392 10.0561 45 1 0.9078 9.0005 7.9232 46 1 0.2844 10.0002 6.1927 47 1 1.9106 9.2818 6.1062 48 1 1.0588 9.7395 4.6115 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266095317.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:32 Heat of formation + Delta-G solvation = -104.066339 kcal Electronic energy + Delta-G solvation = -28878.264640 eV Core-core repulsion = 24654.640900 eV Total energy + Delta-G solvation = -4223.623740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.83099 -41.49008 -40.34478 -38.29279 -38.09301 -36.12053 -34.07926 -33.79941 -32.67462 -30.88430 -30.31188 -29.05141 -28.00774 -26.83469 -25.20756 -23.44962 -23.09266 -22.48297 -22.03528 -21.21871 -19.08045 -18.61380 -18.21439 -18.03605 -17.96177 -17.04352 -16.77805 -16.69140 -16.53191 -16.36497 -15.79159 -15.67617 -15.53967 -15.38818 -15.06828 -14.60117 -14.32882 -14.31085 -14.06068 -14.00638 -13.72994 -13.26165 -13.21943 -13.18051 -12.87106 -12.78349 -12.70865 -12.63984 -12.53059 -12.28679 -12.11352 -11.91683 -11.88647 -11.82017 -11.44797 -11.23195 -10.96742 -10.49361 -10.06141 -10.04088 -9.07561 -8.53668 -7.79645 -5.43969 0.08943 0.19403 1.44664 1.48381 1.57982 1.70045 2.18296 2.30327 2.51637 2.64207 3.25110 3.26287 3.54261 3.68775 3.70110 3.94175 4.07674 4.12225 4.17854 4.33651 4.35436 4.37962 4.40884 4.45986 4.47045 4.56940 4.69571 4.71301 4.75075 4.79071 4.86764 4.90702 5.05070 5.06499 5.07767 5.09900 5.18059 5.26521 5.35194 5.47382 5.50465 5.62273 5.69665 5.71287 5.85824 6.33461 6.49476 6.62914 7.20024 7.31842 7.90047 8.42656 9.15074 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.002356 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.840249 B =11880.450655 C =13198.042886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.261 4.261 5 H 0.056 0.944 6 C -0.038 4.038 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.265 1.265 10 H -0.290 1.290 11 H -0.293 1.293 12 C 0.150 3.850 13 C -0.121 4.121 14 C 0.135 3.865 15 N -0.716 5.716 16 C 0.511 3.489 17 O -0.584 6.584 18 C -0.086 4.086 19 C -0.088 4.088 20 C -0.108 4.108 21 C 0.039 3.961 22 F -0.149 7.149 23 C -0.112 4.112 24 C -0.183 4.183 25 C 0.121 3.879 26 O -0.329 6.329 27 C 0.017 3.983 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.250 0.750 34 H 0.058 0.942 35 H 0.026 0.974 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.038 0.962 39 H 0.056 0.944 40 H 0.415 0.585 41 H 0.124 0.876 42 H 0.138 0.862 43 H 0.154 0.846 44 H 0.160 0.840 45 H 0.163 0.837 46 H 0.078 0.922 47 H 0.059 0.941 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.267 11.164 17.390 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.324 5.324 4 C -0.391 4.391 5 H 0.073 0.927 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.189 1.189 10 H -0.217 1.217 11 H -0.220 1.220 12 C 0.024 3.976 13 C -0.161 4.161 14 C 0.010 3.990 15 N -0.369 5.369 16 C 0.299 3.701 17 O -0.464 6.464 18 C -0.125 4.125 19 C -0.089 4.089 20 C -0.127 4.127 21 C 0.020 3.980 22 F -0.128 7.128 23 C -0.131 4.131 24 C -0.201 4.201 25 C 0.075 3.925 26 O -0.243 6.243 27 C -0.077 4.077 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.252 0.748 41 H 0.142 0.858 42 H 0.156 0.844 43 H 0.172 0.828 44 H 0.177 0.823 45 H 0.180 0.820 46 H 0.097 0.903 47 H 0.077 0.923 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.404 11.157 17.612 24.785 hybrid contribution 0.375 0.643 -0.618 0.967 sum -13.028 11.800 16.994 24.449 Atomic orbital electron populations 1.22166 0.97139 1.00787 1.00901 1.21001 0.93943 0.85683 0.98552 1.44008 1.76468 1.09593 1.02298 1.19207 1.04026 1.21094 0.94810 0.92651 1.25866 0.94038 1.03421 1.00182 1.70138 1.03830 1.38098 1.44243 0.85430 0.77782 0.79563 0.79009 1.18925 1.21697 1.21995 1.20696 0.95396 0.96036 0.85520 1.22148 1.00565 0.99533 0.93885 1.21071 0.87742 0.95317 0.94863 1.45968 1.14194 1.53409 1.23284 1.21110 0.90564 0.78050 0.80388 1.90691 1.32407 1.62352 1.60985 1.20538 0.95998 1.01376 0.94616 1.18644 1.02877 0.92581 0.94803 1.21008 1.00849 1.00911 0.89940 1.17703 1.05647 0.93445 0.81197 1.91465 1.93252 1.81974 1.46060 1.21194 0.98628 0.93141 1.00127 1.21335 1.05482 1.02734 0.90551 1.19075 0.95386 0.92335 0.85687 1.86070 1.77656 1.32710 1.27828 1.23361 0.98121 0.80695 1.05544 0.94459 0.91671 0.92918 0.95326 0.93808 0.94078 0.92388 0.95598 0.91002 0.92877 0.94353 0.92515 0.74799 0.85806 0.84418 0.82846 0.82284 0.81974 0.90349 0.92279 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 10.21 71.98 0.73 -4.22 16 2 C 0.13 5.45 6.44 86.38 0.56 6.00 16 3 N -0.60 -29.20 2.43 -701.99 -1.71 -30.91 16 4 C -0.26 -13.99 9.45 84.03 0.79 -13.19 16 5 H 0.06 2.96 7.92 -2.91 -0.02 2.94 16 6 C -0.04 -2.08 4.95 84.86 0.42 -1.66 16 7 N -0.92 -53.82 11.47 21.65 0.25 -53.57 16 8 Si 0.95 44.14 29.60 68.60 2.03 46.17 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 C 0.15 6.87 5.33 86.38 0.46 7.33 16 13 C -0.12 -4.36 5.65 30.59 0.17 -4.18 16 14 C 0.13 4.55 5.67 86.38 0.49 5.04 16 15 N -0.72 -18.90 5.56 -463.07 -2.57 -21.47 16 16 C 0.51 14.36 7.82 87.66 0.69 15.04 16 17 O -0.58 -22.15 16.03 -3.03 -0.05 -22.20 16 18 C -0.09 -1.62 5.55 29.10 0.16 -1.46 16 19 C -0.09 -1.93 4.39 -19.77 -0.09 -2.02 16 20 C -0.11 -2.27 9.65 22.30 0.22 -2.05 16 21 C 0.04 0.84 7.30 22.37 0.16 1.00 16 22 F -0.15 -3.33 17.27 44.97 0.78 -2.55 16 23 C -0.11 -2.00 10.02 22.30 0.22 -1.78 16 24 C -0.18 -3.23 9.04 22.36 0.20 -3.03 16 25 C 0.12 2.66 6.66 22.50 0.15 2.81 16 26 O -0.33 -7.15 9.63 -92.86 -0.89 -8.05 16 27 C 0.02 0.23 9.81 113.37 1.11 1.34 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.63 6.64 -2.39 -0.02 1.61 16 31 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 32 H 0.04 1.67 7.83 -2.38 -0.02 1.65 16 33 H 0.25 14.21 8.31 -92.71 -0.77 13.43 16 34 H 0.06 3.13 5.52 -2.38 -0.01 3.11 16 35 H 0.03 1.14 7.86 -2.39 -0.02 1.12 16 36 H 0.07 2.30 6.64 -2.38 -0.02 2.28 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.42 8.14 8.47 -92.71 -0.79 7.36 16 41 H 0.12 1.98 7.69 -2.39 -0.02 1.96 16 42 H 0.14 1.61 8.05 -2.39 -0.02 1.59 16 43 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 44 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 45 H 0.16 1.89 6.30 -2.92 -0.02 1.87 16 46 H 0.08 0.67 7.66 -2.39 -0.02 0.65 16 47 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 48 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -72.87 400.87 4.47 -68.40 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.18 Total: 19.20 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 6.46 Total: 4.98 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -4.03 Total: -105.96 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.94 Total: -30.24 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.55 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -72.87 4.47 -68.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266095317.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.665 kcal (2) G-P(sol) polarization free energy of solvation -72.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds