Wall clock time and date at job start Tue Mar 31 2020 20:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99891 * 2 1 4 4 C 1.53005 * 109.46906 * 173.24649 * 3 2 1 5 5 C 1.50697 * 109.47536 * 53.24214 * 3 2 1 6 6 O 1.21278 * 119.99706 * 214.99990 * 5 3 2 7 7 N 1.34774 * 119.99904 * 35.00111 * 5 3 2 8 8 C 1.46501 * 119.99878 * 179.97438 * 7 5 3 9 9 C 1.53006 * 109.46767 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.46661 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47665 * 304.99853 * 10 9 8 12 12 C 1.53000 * 109.46899 * 184.99774 * 10 9 8 13 13 N 1.46499 * 109.46985 * 65.00183 * 10 9 8 14 14 C 1.36941 * 119.99849 * 204.99694 * 13 10 9 15 15 H 1.07999 * 119.99905 * 359.97438 * 14 13 10 16 16 C 1.38809 * 119.99863 * 179.72437 * 14 13 10 17 17 N 1.31618 * 120.00384 * 0.27305 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 180.27750 * 16 14 13 19 19 H 1.48496 * 109.47449 * 60.00077 * 18 16 14 20 20 H 1.48504 * 109.46897 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46996 * 299.99603 * 18 16 14 22 22 C 1.50703 * 109.46711 * 293.24019 * 3 2 1 23 23 C 1.38218 * 120.01510 * 357.48935 * 22 3 2 24 24 C 1.38220 * 120.02714 * 179.97438 * 23 22 3 25 25 C 1.38268 * 120.05173 * 0.02562 * 24 23 22 26 26 C 1.38178 * 120.02628 * 0.02562 * 25 24 23 27 27 C 1.38441 * 120.01084 * 177.20722 * 22 3 2 28 28 F 1.35096 * 120.02627 * 0.02562 * 27 22 3 29 29 H 1.08988 * 109.47387 * 172.13233 * 1 2 3 30 30 H 1.08997 * 109.47130 * 292.13772 * 1 2 3 31 31 H 1.09003 * 109.46697 * 52.12905 * 1 2 3 32 32 H 1.08994 * 109.46809 * 299.99317 * 4 3 2 33 33 H 1.08996 * 109.47100 * 59.99952 * 4 3 2 34 34 H 1.08997 * 109.47022 * 179.97438 * 4 3 2 35 35 H 0.97003 * 119.99850 * 0.02562 * 7 5 3 36 36 H 1.08997 * 109.46848 * 60.00398 * 8 7 5 37 37 H 1.09003 * 109.47330 * 299.99933 * 8 7 5 38 38 H 1.08997 * 109.47344 * 60.00417 * 9 8 7 39 39 H 1.09003 * 109.46908 * 299.99906 * 9 8 7 40 40 H 1.09005 * 109.47355 * 299.99889 * 12 10 9 41 41 H 1.09002 * 109.47240 * 60.00132 * 12 10 9 42 42 H 1.09004 * 109.47327 * 180.02562 * 12 10 9 43 43 H 0.97003 * 120.00500 * 24.99364 * 13 10 9 44 44 H 0.97001 * 120.00430 * 180.02562 * 17 16 14 45 45 H 1.08000 * 119.98445 * 359.97438 * 23 22 3 46 46 H 1.08004 * 119.97504 * 180.02562 * 24 23 22 47 47 H 1.07994 * 119.98851 * 179.97438 * 25 24 23 48 48 H 1.07996 * 120.01849 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5264 1.1887 0.1696 5 6 1.4379 2.1103 1.1383 6 8 1.2534 3.3016 1.0059 7 7 1.1310 1.5061 2.3033 8 6 0.5751 2.2886 3.4100 9 6 0.3190 1.3696 4.6062 10 6 -0.2609 2.1869 5.7623 11 1 0.4050 3.0195 5.9887 12 6 -0.4006 1.2951 6.9976 13 7 -1.5778 2.7043 5.3821 14 6 -2.0683 3.8342 5.9804 15 1 -1.4845 4.3437 6.7328 16 6 -3.3135 4.3277 5.6161 17 7 -4.0251 3.7066 4.6995 18 14 -3.9792 5.8734 6.4266 19 1 -3.0545 7.0060 6.1671 20 1 -5.3175 6.1892 5.8659 21 1 -4.0946 5.6541 7.8907 22 6 1.7023 1.9924 -1.3056 23 6 1.0029 1.3220 -2.2914 24 6 0.7199 1.9519 -3.4887 25 6 1.1364 3.2530 -3.7020 26 6 1.8367 3.9248 -2.7184 27 6 2.1148 3.2971 -1.5158 28 9 2.7940 3.9551 -0.5509 29 1 -0.3633 -1.0179 -0.1407 30 1 -0.3633 0.3872 0.9519 31 1 -0.3633 0.6309 -0.8113 32 1 3.7490 0.6920 1.1139 33 1 3.9403 0.6067 -0.6537 34 1 3.9697 2.1844 0.1692 35 1 1.2790 0.5533 2.4092 36 1 -0.3627 2.7467 3.0960 37 1 1.2823 3.0675 3.6956 38 1 1.2571 0.9118 4.9201 39 1 -0.3879 0.5904 4.3209 40 1 -1.0667 0.4625 6.7713 41 1 0.5791 0.9101 7.2805 42 1 -0.8143 1.8772 7.8212 43 1 -2.1022 2.2465 4.7066 44 1 -4.8951 4.0516 4.4446 45 1 0.6774 0.3055 -2.1260 46 1 0.1730 1.4274 -4.2583 47 1 0.9151 3.7440 -4.6381 48 1 2.1623 4.9409 -2.8853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267132494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:12 Heat of formation + Delta-G solvation = -79.809845 kcal Electronic energy + Delta-G solvation = -30476.434051 eV Core-core repulsion = 26253.862151 eV Total energy + Delta-G solvation = -4222.571900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.77670 -40.90393 -38.82263 -37.55237 -36.57869 -34.39725 -32.97305 -32.23562 -30.96355 -29.93543 -29.21417 -28.08984 -26.59078 -24.94054 -23.83389 -22.96764 -22.93121 -21.66548 -20.36087 -19.59102 -18.09204 -17.80255 -17.16771 -16.79406 -16.22735 -15.73282 -15.61761 -15.47412 -15.11408 -14.93345 -14.85182 -14.50413 -14.22897 -13.84704 -13.51278 -13.47278 -13.14413 -12.95675 -12.69835 -12.55540 -12.49660 -12.33150 -12.25556 -12.03961 -11.93162 -11.65702 -11.53790 -11.23271 -11.05937 -10.89909 -10.72434 -10.62709 -10.43835 -10.27792 -9.98883 -9.62904 -9.45997 -9.09387 -8.90794 -8.82569 -8.70226 -6.93996 -5.73795 -3.02386 0.93255 1.05821 2.60782 3.04890 3.40990 3.46774 3.48626 3.51364 3.51928 4.16030 4.26838 4.55962 4.62219 4.65748 4.70092 4.84036 5.06771 5.15299 5.22841 5.25433 5.29338 5.36494 5.40323 5.42058 5.57406 5.60380 5.61588 5.69339 5.79875 5.88204 5.90396 5.95868 6.07198 6.07801 6.18113 6.18788 6.34491 6.39669 6.47590 6.61318 6.69132 6.71438 6.74838 6.87142 7.07029 7.60684 7.72863 8.29100 8.44612 9.55978 10.12477 10.47118 11.48835 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.003032 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.232941 B = 9233.401936 C =10165.641792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.363 6.363 3 C 0.149 3.851 4 C -0.137 4.137 5 C 0.488 3.512 6 O -0.513 6.513 7 N -0.720 5.720 8 C 0.121 3.879 9 C -0.132 4.132 10 C 0.175 3.825 11 H 0.049 0.951 12 C -0.163 4.163 13 N -0.723 5.723 14 C -0.238 4.238 15 H 0.069 0.931 16 C -0.012 4.012 17 N -0.933 5.933 18 Si 0.905 3.095 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.287 1.287 22 C -0.147 4.147 23 C -0.080 4.080 24 C -0.141 4.141 25 C -0.085 4.085 26 C -0.164 4.164 27 C 0.147 3.853 28 F -0.120 7.120 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.400 0.600 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.035 0.965 42 H 0.054 0.946 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.141 0.859 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.724 -9.713 -16.053 23.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.281 6.281 3 C 0.105 3.895 4 C -0.194 4.194 5 C 0.271 3.729 6 O -0.388 6.388 7 N -0.372 5.372 8 C -0.001 4.001 9 C -0.170 4.170 10 C 0.064 3.936 11 H 0.067 0.933 12 C -0.223 4.223 13 N -0.365 5.365 14 C -0.370 4.370 15 H 0.087 0.913 16 C -0.208 4.208 17 N -0.582 5.582 18 Si 0.736 3.264 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.149 4.149 23 C -0.098 4.098 24 C -0.159 4.159 25 C -0.103 4.103 26 C -0.183 4.183 27 C 0.127 3.873 28 F -0.098 7.098 29 H 0.115 0.885 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.235 0.765 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.159 0.841 46 H 0.148 0.852 47 H 0.149 0.851 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.676 -8.805 -15.991 23.423 hybrid contribution -0.790 0.594 0.513 1.113 sum 13.886 -8.212 -15.479 22.357 Atomic orbital electron populations 1.23334 0.80251 1.03660 1.02572 1.87980 1.20582 1.24902 1.94680 1.20467 0.96130 0.82954 0.89922 1.21815 0.89620 1.04093 1.03905 1.20857 0.79146 0.88647 0.84209 1.90795 1.51398 1.14760 1.81811 1.46159 1.64740 1.12701 1.13616 1.21495 0.99778 0.93851 0.84995 1.22060 1.00674 0.98631 0.95679 1.20149 0.88763 0.93834 0.90838 0.93311 1.22424 0.99185 1.00323 1.00405 1.42440 1.15721 1.30568 1.47800 1.19180 0.99744 1.01581 1.16452 0.91278 1.24710 0.97431 0.99281 0.99370 1.69640 1.13215 1.41262 1.34049 0.86298 0.78059 0.83350 0.78676 1.21263 1.21746 1.21339 1.19983 1.03636 0.94226 0.97068 1.21058 0.95978 1.00504 0.92281 1.21141 1.01807 0.95429 0.97518 1.21046 0.96053 0.94529 0.98633 1.21167 1.02761 1.01376 0.93000 1.17355 0.94118 0.89754 0.86050 1.91549 1.76351 1.80274 1.61603 0.88549 0.92360 0.92302 0.90609 0.90339 0.89818 0.76525 0.89717 0.91740 0.91875 0.91630 0.93531 0.94556 0.92717 0.78335 0.93536 0.84117 0.85241 0.85066 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.12 101.05 0.92 0.90 16 2 O -0.36 -4.01 9.08 -35.23 -0.32 -4.33 16 3 C 0.15 1.86 0.80 -92.92 -0.07 1.79 16 4 C -0.14 -1.44 8.64 37.16 0.32 -1.11 16 5 C 0.49 7.66 5.49 -10.99 -0.06 7.60 16 6 O -0.51 -10.18 13.25 5.56 0.07 -10.11 16 7 N -0.72 -10.22 4.27 -60.29 -0.26 -10.48 16 8 C 0.12 2.06 5.56 -4.04 -0.02 2.03 16 9 C -0.13 -2.03 4.87 -26.73 -0.13 -2.16 16 10 C 0.17 3.36 2.89 -67.93 -0.20 3.16 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.16 -2.86 9.49 37.16 0.35 -2.51 16 13 N -0.72 -17.78 4.57 -53.43 -0.24 -18.03 16 14 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 18 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 C -0.15 -1.89 4.42 -104.55 -0.46 -2.35 16 23 C -0.08 -0.85 7.70 -39.60 -0.30 -1.16 16 24 C -0.14 -1.28 10.04 -39.58 -0.40 -1.68 16 25 C -0.08 -0.78 10.04 -39.59 -0.40 -1.18 16 26 C -0.16 -1.86 10.03 -39.51 -0.40 -2.26 16 27 C 0.15 2.03 6.19 -39.42 -0.24 1.78 16 28 F -0.12 -1.89 12.89 2.25 0.03 -1.86 16 29 H 0.10 0.75 8.14 -51.94 -0.42 0.33 16 30 H 0.06 0.70 6.23 -51.93 -0.32 0.38 16 31 H 0.06 0.63 5.13 -51.93 -0.27 0.37 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.94 6.53 -51.93 -0.34 0.60 16 35 H 0.40 4.63 7.61 -40.82 -0.31 4.32 16 36 H 0.08 1.78 7.75 -51.93 -0.40 1.38 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 44 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.14 1.28 5.53 -52.49 -0.29 0.99 16 46 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 47 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -33.43 386.96 -7.81 -41.24 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -7.29 Total: 11.97 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.34 Total: -4.36 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.22 Total: -56.13 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.25 Total: -14.44 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.03 Total: -1.86 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.43 -7.81 -41.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267132494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.569 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds