Wall clock time and date at job start Tue Mar 31 2020 20:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99891 * 2 1 4 4 C 1.53005 * 109.46906 * 173.24649 * 3 2 1 5 5 C 1.50697 * 109.47536 * 53.24214 * 3 2 1 6 6 O 1.21278 * 119.99706 * 214.99990 * 5 3 2 7 7 N 1.34774 * 119.99904 * 35.00111 * 5 3 2 8 8 C 1.46501 * 119.99878 * 179.97438 * 7 5 3 9 9 C 1.53006 * 109.46767 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.46661 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47665 * 304.99853 * 10 9 8 12 12 C 1.53000 * 109.46899 * 184.99774 * 10 9 8 13 13 N 1.46499 * 109.46985 * 65.00183 * 10 9 8 14 14 C 1.36941 * 119.99849 * 204.99694 * 13 10 9 15 15 H 1.07999 * 119.99905 * 359.97438 * 14 13 10 16 16 C 1.38809 * 119.99863 * 179.72437 * 14 13 10 17 17 N 1.31618 * 120.00384 * 0.27305 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 180.27750 * 16 14 13 19 19 H 1.48496 * 109.47449 * 60.00077 * 18 16 14 20 20 H 1.48504 * 109.46897 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.46996 * 299.99603 * 18 16 14 22 22 C 1.50703 * 109.46711 * 293.24019 * 3 2 1 23 23 C 1.38218 * 120.01510 * 357.48935 * 22 3 2 24 24 C 1.38220 * 120.02714 * 179.97438 * 23 22 3 25 25 C 1.38268 * 120.05173 * 0.02562 * 24 23 22 26 26 C 1.38178 * 120.02628 * 0.02562 * 25 24 23 27 27 C 1.38441 * 120.01084 * 177.20722 * 22 3 2 28 28 F 1.35096 * 120.02627 * 0.02562 * 27 22 3 29 29 H 1.08988 * 109.47387 * 172.13233 * 1 2 3 30 30 H 1.08997 * 109.47130 * 292.13772 * 1 2 3 31 31 H 1.09003 * 109.46697 * 52.12905 * 1 2 3 32 32 H 1.08994 * 109.46809 * 299.99317 * 4 3 2 33 33 H 1.08996 * 109.47100 * 59.99952 * 4 3 2 34 34 H 1.08997 * 109.47022 * 179.97438 * 4 3 2 35 35 H 0.97003 * 119.99850 * 0.02562 * 7 5 3 36 36 H 1.08997 * 109.46848 * 60.00398 * 8 7 5 37 37 H 1.09003 * 109.47330 * 299.99933 * 8 7 5 38 38 H 1.08997 * 109.47344 * 60.00417 * 9 8 7 39 39 H 1.09003 * 109.46908 * 299.99906 * 9 8 7 40 40 H 1.09005 * 109.47355 * 299.99889 * 12 10 9 41 41 H 1.09002 * 109.47240 * 60.00132 * 12 10 9 42 42 H 1.09004 * 109.47327 * 180.02562 * 12 10 9 43 43 H 0.97003 * 120.00500 * 24.99364 * 13 10 9 44 44 H 0.97001 * 120.00430 * 180.02562 * 17 16 14 45 45 H 1.08000 * 119.98445 * 359.97438 * 23 22 3 46 46 H 1.08004 * 119.97504 * 180.02562 * 24 23 22 47 47 H 1.07994 * 119.98851 * 179.97438 * 25 24 23 48 48 H 1.07996 * 120.01849 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5264 1.1887 0.1696 5 6 1.4379 2.1103 1.1383 6 8 1.2534 3.3016 1.0059 7 7 1.1310 1.5061 2.3033 8 6 0.5751 2.2886 3.4100 9 6 0.3190 1.3696 4.6062 10 6 -0.2609 2.1869 5.7623 11 1 0.4050 3.0195 5.9887 12 6 -0.4006 1.2951 6.9976 13 7 -1.5778 2.7043 5.3821 14 6 -2.0683 3.8342 5.9804 15 1 -1.4845 4.3437 6.7328 16 6 -3.3135 4.3277 5.6161 17 7 -4.0251 3.7066 4.6995 18 14 -3.9792 5.8734 6.4266 19 1 -3.0545 7.0060 6.1671 20 1 -5.3175 6.1892 5.8659 21 1 -4.0946 5.6541 7.8907 22 6 1.7023 1.9924 -1.3056 23 6 1.0029 1.3220 -2.2914 24 6 0.7199 1.9519 -3.4887 25 6 1.1364 3.2530 -3.7020 26 6 1.8367 3.9248 -2.7184 27 6 2.1148 3.2971 -1.5158 28 9 2.7940 3.9551 -0.5509 29 1 -0.3633 -1.0179 -0.1407 30 1 -0.3633 0.3872 0.9519 31 1 -0.3633 0.6309 -0.8113 32 1 3.7490 0.6920 1.1139 33 1 3.9403 0.6067 -0.6537 34 1 3.9697 2.1844 0.1692 35 1 1.2790 0.5533 2.4092 36 1 -0.3627 2.7467 3.0960 37 1 1.2823 3.0675 3.6956 38 1 1.2571 0.9118 4.9201 39 1 -0.3879 0.5904 4.3209 40 1 -1.0667 0.4625 6.7713 41 1 0.5791 0.9101 7.2805 42 1 -0.8143 1.8772 7.8212 43 1 -2.1022 2.2465 4.7066 44 1 -4.8951 4.0516 4.4446 45 1 0.6774 0.3055 -2.1260 46 1 0.1730 1.4274 -4.2583 47 1 0.9151 3.7440 -4.6381 48 1 2.1623 4.9409 -2.8853 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267132494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:12 Heat of formation + Delta-G solvation = -101.954222 kcal Electronic energy + Delta-G solvation = -30477.394303 eV Core-core repulsion = 26253.862151 eV Total energy + Delta-G solvation = -4223.532152 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.81762 -41.94939 -39.84000 -38.53000 -38.13767 -35.91309 -34.14211 -33.88362 -31.79554 -31.16196 -30.60469 -29.58858 -27.43082 -26.13892 -25.61463 -24.23699 -23.77150 -22.81677 -21.71974 -20.92712 -19.38430 -19.01463 -18.71838 -17.72775 -17.22164 -16.98009 -16.83676 -16.58180 -16.48911 -16.02272 -15.85902 -15.77965 -15.49767 -15.33480 -15.15408 -14.54632 -14.42657 -14.18069 -13.93192 -13.60081 -13.54925 -13.37097 -13.32654 -13.26040 -13.09944 -12.81128 -12.77404 -12.65107 -12.45108 -12.33996 -12.27937 -12.15041 -12.07770 -11.65761 -11.61516 -11.38095 -10.95423 -10.60640 -10.14321 -9.94383 -9.61393 -8.99122 -7.93887 -5.20611 0.10124 0.22453 1.39304 1.44378 1.47481 1.52771 1.94536 2.48581 2.55852 2.61725 3.27321 3.39234 3.40233 3.52669 3.77368 3.88559 3.89735 3.96188 4.11669 4.19161 4.31533 4.33082 4.35621 4.40648 4.44843 4.54876 4.62656 4.64211 4.72900 4.80295 4.83744 4.86847 4.99195 4.99467 5.08330 5.09469 5.15802 5.17808 5.29689 5.36108 5.37720 5.41333 5.52343 5.59974 5.74742 5.91471 6.28996 6.44429 7.10624 7.35132 8.12656 8.34352 9.29442 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.003032 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.232941 B = 9233.401936 C =10165.641792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.353 6.353 3 C 0.156 3.844 4 C -0.135 4.135 5 C 0.483 3.517 6 O -0.561 6.561 7 N -0.705 5.705 8 C 0.134 3.866 9 C -0.115 4.115 10 C 0.165 3.835 11 H 0.041 0.959 12 C -0.153 4.153 13 N -0.735 5.735 14 C -0.236 4.236 15 H 0.073 0.927 16 C -0.075 4.075 17 N -0.969 5.969 18 Si 0.966 3.034 19 H -0.283 1.283 20 H -0.296 1.296 21 H -0.276 1.276 22 C -0.167 4.167 23 C -0.086 4.086 24 C -0.134 4.134 25 C -0.081 4.081 26 C -0.176 4.176 27 C 0.109 3.891 28 F -0.142 7.142 29 H 0.129 0.871 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.416 0.584 36 H 0.036 0.964 37 H 0.049 0.951 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.372 0.628 44 H 0.249 0.751 45 H 0.157 0.843 46 H 0.164 0.836 47 H 0.165 0.835 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.627 -11.733 -16.897 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.271 6.271 3 C 0.112 3.888 4 C -0.192 4.192 5 C 0.268 3.732 6 O -0.439 6.439 7 N -0.358 5.358 8 C 0.011 3.989 9 C -0.153 4.153 10 C 0.056 3.944 11 H 0.059 0.941 12 C -0.212 4.212 13 N -0.375 5.375 14 C -0.368 4.368 15 H 0.091 0.909 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.795 3.205 19 H -0.210 1.210 20 H -0.223 1.223 21 H -0.202 1.202 22 C -0.168 4.168 23 C -0.104 4.104 24 C -0.152 4.152 25 C -0.098 4.098 26 C -0.195 4.195 27 C 0.089 3.911 28 F -0.121 7.121 29 H 0.147 0.853 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.254 0.746 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.204 0.796 44 H 0.057 0.943 45 H 0.175 0.825 46 H 0.182 0.818 47 H 0.182 0.818 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.635 -10.878 -16.802 25.398 hybrid contribution -1.023 1.190 0.721 1.727 sum 14.612 -9.689 -16.080 23.790 Atomic orbital electron populations 1.23452 0.79861 1.05448 1.01323 1.88000 1.20890 1.23708 1.94498 1.20381 0.96990 0.82901 0.88501 1.21835 0.88150 1.03821 1.05405 1.21593 0.78171 0.88395 0.85022 1.90771 1.53342 1.17091 1.82689 1.45968 1.63894 1.13215 1.12720 1.21124 0.97155 0.94286 0.86377 1.21917 1.02493 0.97612 0.93296 1.20441 0.86252 0.94500 0.93169 0.94135 1.22258 1.01315 0.99411 0.98264 1.42629 1.17512 1.29990 1.47414 1.19560 0.99529 1.02105 1.15596 0.90948 1.25463 0.98219 1.02436 1.00641 1.69794 1.13349 1.42904 1.35956 0.85324 0.76958 0.80029 0.78174 1.20998 1.22264 1.20190 1.20150 1.04705 0.94245 0.97723 1.21345 0.95402 1.01251 0.92391 1.21600 1.00684 0.95356 0.97558 1.21477 0.94550 0.94677 0.99141 1.21452 1.03159 1.02072 0.92824 1.17815 0.95801 0.90726 0.86715 1.91480 1.77091 1.80808 1.62682 0.85338 0.94419 0.92653 0.89296 0.88459 0.91167 0.74623 0.94519 0.93212 0.87739 0.90871 0.93525 0.90594 0.94826 0.79640 0.94259 0.82537 0.81821 0.81782 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.12 113.37 1.03 0.93 16 2 O -0.35 -7.15 9.08 -148.98 -1.35 -8.50 16 3 C 0.16 3.84 0.80 -12.28 -0.01 3.83 16 4 C -0.14 -2.73 8.64 71.98 0.62 -2.11 16 5 C 0.48 15.55 5.49 87.66 0.48 16.03 16 6 O -0.56 -23.62 13.25 -3.02 -0.04 -23.66 16 7 N -0.70 -19.98 4.27 -463.06 -1.98 -21.96 16 8 C 0.13 4.66 5.56 86.38 0.48 5.14 16 9 C -0.11 -3.37 4.87 30.60 0.15 -3.22 16 10 C 0.16 6.24 2.89 44.99 0.13 6.37 16 11 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 12 C -0.15 -5.05 9.49 71.98 0.68 -4.36 16 13 N -0.73 -36.78 4.57 -322.94 -1.48 -38.26 16 14 C -0.24 -13.30 9.93 84.03 0.83 -12.47 16 15 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 16 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 17 N -0.97 -60.55 13.06 21.65 0.28 -60.26 16 18 Si 0.97 47.64 29.55 68.60 2.03 49.67 16 19 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 22 C -0.17 -4.24 4.42 -19.82 -0.09 -4.33 16 23 C -0.09 -1.68 7.70 22.26 0.17 -1.51 16 24 C -0.13 -2.08 10.04 22.27 0.22 -1.86 16 25 C -0.08 -1.33 10.04 22.26 0.22 -1.10 16 26 C -0.18 -3.98 10.03 22.31 0.22 -3.76 16 27 C 0.11 3.11 6.19 22.38 0.14 3.25 16 28 F -0.14 -4.83 12.89 44.97 0.58 -4.25 16 29 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 0.89 6.23 -2.39 -0.01 0.87 16 31 H 0.06 1.12 5.13 -2.39 -0.01 1.11 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.62 6.53 -2.39 -0.02 1.61 16 35 H 0.42 9.01 7.61 -92.71 -0.71 8.30 16 36 H 0.04 1.63 7.75 -2.39 -0.02 1.62 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.37 20.06 7.80 -92.71 -0.72 19.33 16 44 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 45 H 0.16 2.44 5.53 -2.91 -0.02 2.42 16 46 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 47 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 48 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -76.71 386.96 3.36 -73.35 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: -0.44 Total: 37.02 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 5.77 Total: -3.14 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -3.17 Total: -120.49 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -1.39 Total: -32.16 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.58 Total: -4.25 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -76.71 3.36 -73.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267132494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.608 kcal (2) G-P(sol) polarization free energy of solvation -76.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds