Wall clock time and date at job start Tue Mar 31 2020 20:36:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42901 * 113.99578 * 2 1
4 4 C 1.52997 * 109.47255 * 173.24767 * 3 2 1
5 5 C 1.50703 * 109.47339 * 53.24626 * 3 2 1
6 6 O 1.21273 * 120.00278 * 214.99999 * 5 3 2
7 7 N 1.34773 * 119.99517 * 34.99998 * 5 3 2
8 8 C 1.46499 * 119.99796 * 179.97438 * 7 5 3
9 9 C 1.53000 * 109.47443 * 179.97438 * 8 7 5
10 10 C 1.52999 * 109.47409 * 180.02562 * 9 8 7
11 11 H 1.08997 * 109.46714 * 55.00236 * 10 9 8
12 12 C 1.53004 * 109.47005 * 174.99813 * 10 9 8
13 13 N 1.46500 * 109.47307 * 295.00168 * 10 9 8
14 14 C 1.36932 * 119.99846 * 154.99576 * 13 10 9
15 15 H 1.08004 * 120.00234 * 0.02562 * 14 13 10
16 16 C 1.38818 * 119.99866 * 179.97438 * 14 13 10
17 17 N 1.31621 * 119.99781 * 0.02562 * 16 14 13
18 18 Si 1.86794 * 119.99911 * 180.02562 * 16 14 13
19 19 H 1.48496 * 109.47438 * 60.00564 * 18 16 14
20 20 H 1.48501 * 109.46793 * 180.02562 * 18 16 14
21 21 H 1.48503 * 109.47425 * 300.00130 * 18 16 14
22 22 C 1.50710 * 109.47143 * 293.24777 * 3 2 1
23 23 C 1.38213 * 120.00931 * 357.48400 * 22 3 2
24 24 C 1.38229 * 120.02025 * 179.97438 * 23 22 3
25 25 C 1.38266 * 120.05163 * 0.02562 * 24 23 22
26 26 C 1.38176 * 120.02815 * 0.02562 * 25 24 23
27 27 C 1.38438 * 120.00784 * 177.20774 * 22 3 2
28 28 F 1.35100 * 120.03089 * 359.97438 * 27 22 3
29 29 H 1.09001 * 109.46748 * 172.13124 * 1 2 3
30 30 H 1.08996 * 109.47202 * 292.12653 * 1 2 3
31 31 H 1.08996 * 109.47532 * 52.13114 * 1 2 3
32 32 H 1.09005 * 109.47291 * 300.00081 * 4 3 2
33 33 H 1.09005 * 109.47356 * 59.99794 * 4 3 2
34 34 H 1.08997 * 109.47462 * 179.97438 * 4 3 2
35 35 H 0.97004 * 120.00459 * 0.02562 * 7 5 3
36 36 H 1.08999 * 109.47683 * 300.00006 * 8 7 5
37 37 H 1.09007 * 109.47209 * 60.00166 * 8 7 5
38 38 H 1.09001 * 109.47204 * 300.00460 * 9 8 7
39 39 H 1.08998 * 109.46740 * 60.00142 * 9 8 7
40 40 H 1.09006 * 109.47013 * 60.00430 * 12 10 9
41 41 H 1.09004 * 109.46954 * 179.97438 * 12 10 9
42 42 H 1.09000 * 109.47427 * 300.00617 * 12 10 9
43 43 H 0.97004 * 119.99446 * 335.00131 * 13 10 9
44 44 H 0.96996 * 119.99893 * 179.97438 * 17 16 14
45 45 H 1.07997 * 119.99254 * 359.97438 * 23 22 3
46 46 H 1.08003 * 119.96958 * 179.97438 * 24 23 22
47 47 H 1.07999 * 119.98375 * 179.97438 * 25 24 23
48 48 H 1.07998 * 120.01481 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 6 3.5262 1.1889 0.1696
5 6 1.4377 2.1102 1.1384
6 8 1.2531 3.3015 1.0062
7 7 1.1310 1.5059 2.3033
8 6 0.5751 2.2882 3.4102
9 6 0.3179 1.3689 4.6059
10 6 -0.2632 2.1859 5.7616
11 1 -1.1531 2.7150 5.4210
12 6 -0.6364 1.2483 6.9118
13 7 0.7336 3.1544 6.2248
14 6 0.3320 4.3016 6.8555
15 1 -0.7195 4.4922 7.0119
16 6 1.2766 5.2191 7.2949
17 7 2.5581 4.9866 7.1047
18 14 0.7289 6.7836 8.1559
19 1 -0.0292 6.4335 9.3839
20 1 1.9208 7.5900 8.5226
21 1 -0.1402 7.5716 7.2454
22 6 1.7021 1.9925 -1.3055
23 6 1.0027 1.3221 -2.2913
24 6 0.7196 1.9522 -3.4886
25 6 1.1359 3.2534 -3.7017
26 6 1.8362 3.9252 -2.7181
27 6 2.1145 3.2973 -1.5155
28 9 2.7929 3.9556 -0.5503
29 1 -0.3633 -1.0180 -0.1407
30 1 -0.3633 0.3871 0.9519
31 1 -0.3634 0.6308 -0.8112
32 1 3.7491 0.6920 1.1139
33 1 3.9403 0.6069 -0.6538
34 1 3.9695 2.1847 0.1691
35 1 1.2791 0.5531 2.4092
36 1 1.2821 3.0671 3.6958
37 1 -0.3629 2.7463 3.0962
38 1 -0.3893 0.5903 4.3201
39 1 1.2556 0.9105 4.9200
40 1 0.2536 0.7191 7.2524
41 1 -1.0500 1.8304 7.7354
42 1 -1.3780 0.5277 6.5672
43 1 1.6780 2.9830 6.0845
44 1 3.2180 5.6278 7.4113
45 1 0.6773 0.3057 -2.1261
46 1 0.1734 1.4274 -4.2585
47 1 0.9145 3.7445 -4.6377
48 1 2.1617 4.9413 -2.8849
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001267132496.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:36:20
Heat of formation + Delta-G solvation = -102.036745 kcal
Electronic energy + Delta-G solvation = -30409.533356 eV
Core-core repulsion = 26185.997625 eV
Total energy + Delta-G solvation = -4223.535730 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-49.81900 -41.95030 -39.83879 -38.52236 -38.13615 -35.91466 -34.14268 -33.88067
-31.79058 -31.16297 -30.60211 -29.59068 -27.40388 -26.14280 -25.62385 -24.23263
-23.76118 -22.81298 -21.71353 -20.93438 -19.37051 -19.01490 -18.72133 -17.71846
-17.19211 -17.02971 -16.75989 -16.62047 -16.50792 -16.01269 -15.82998 -15.78376
-15.46108 -15.31361 -15.20031 -14.54886 -14.44138 -14.15623 -13.91907 -13.60375
-13.56233 -13.38587 -13.35947 -13.23032 -13.10196 -12.81032 -12.75244 -12.64649
-12.45005 -12.34946 -12.26281 -12.17144 -12.04703 -11.65672 -11.61692 -11.36838
-10.95728 -10.59434 -10.14516 -9.94025 -9.61150 -8.99472 -7.93835 -5.20810
0.10637 0.22980 1.38266 1.43892 1.47293 1.52717 1.95752 2.48971
2.55744 2.62422 3.27928 3.40128 3.40486 3.52212 3.76984 3.88691
3.89989 3.95923 4.12381 4.19126 4.32605 4.35583 4.36527 4.41864
4.48772 4.52551 4.60559 4.63918 4.72670 4.82042 4.84243 4.86962
4.97779 4.99755 5.08359 5.10457 5.16809 5.17824 5.30755 5.36111
5.37867 5.41764 5.52045 5.60230 5.77155 5.92225 6.28847 6.44461
7.10490 7.34693 8.12781 8.33905 9.29583
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.014442 B = 0.002910 C = 0.002603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1938.334245 B = 9618.544321 C =10754.206516
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.007 4.007
2 O -0.355 6.355
3 C 0.159 3.841
4 C -0.139 4.139
5 C 0.483 3.517
6 O -0.561 6.561
7 N -0.705 5.705
8 C 0.134 3.866
9 C -0.115 4.115
10 C 0.165 3.835
11 H 0.042 0.958
12 C -0.153 4.153
13 N -0.735 5.735
14 C -0.235 4.235
15 H 0.074 0.926
16 C -0.079 4.079
17 N -0.970 5.970
18 Si 0.967 3.033
19 H -0.275 1.275
20 H -0.297 1.297
21 H -0.282 1.282
22 C -0.165 4.165
23 C -0.083 4.083
24 C -0.132 4.132
25 C -0.079 4.079
26 C -0.177 4.177
27 C 0.105 3.895
28 F -0.146 7.146
29 H 0.130 0.870
30 H 0.043 0.957
31 H 0.058 0.942
32 H 0.082 0.918
33 H 0.099 0.901
34 H 0.064 0.936
35 H 0.416 0.584
36 H 0.034 0.966
37 H 0.051 0.949
38 H 0.106 0.894
39 H 0.071 0.929
40 H 0.044 0.956
41 H 0.033 0.967
42 H 0.077 0.923
43 H 0.371 0.629
44 H 0.248 0.752
45 H 0.160 0.840
46 H 0.167 0.833
47 H 0.165 0.835
48 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.859 -15.792 -24.416 29.481
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 O -0.273 6.273
3 C 0.115 3.885
4 C -0.196 4.196
5 C 0.268 3.732
6 O -0.439 6.439
7 N -0.358 5.358
8 C 0.011 3.989
9 C -0.153 4.153
10 C 0.056 3.944
11 H 0.060 0.940
12 C -0.213 4.213
13 N -0.376 5.376
14 C -0.367 4.367
15 H 0.092 0.908
16 C -0.270 4.270
17 N -0.621 5.621
18 Si 0.797 3.203
19 H -0.201 1.201
20 H -0.224 1.224
21 H -0.209 1.209
22 C -0.166 4.166
23 C -0.101 4.101
24 C -0.149 4.149
25 C -0.097 4.097
26 C -0.196 4.196
27 C 0.086 3.914
28 F -0.125 7.125
29 H 0.148 0.852
30 H 0.061 0.939
31 H 0.076 0.924
32 H 0.101 0.899
33 H 0.118 0.882
34 H 0.083 0.917
35 H 0.254 0.746
36 H 0.053 0.947
37 H 0.070 0.930
38 H 0.125 0.875
39 H 0.089 0.911
40 H 0.064 0.936
41 H 0.052 0.948
42 H 0.095 0.905
43 H 0.203 0.797
44 H 0.057 0.943
45 H 0.178 0.822
46 H 0.185 0.815
47 H 0.183 0.817
48 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -4.989 -14.964 -24.370 29.029
hybrid contribution 0.525 1.499 1.285 2.043
sum -4.464 -13.465 -23.085 27.096
Atomic orbital electron populations
1.23513 0.79578 1.05591 1.01612 1.88013 1.21383 1.23408 1.94521
1.20293 0.96477 0.83063 0.88662 1.21841 0.88988 1.03571 1.05209
1.21598 0.78115 0.88352 0.85127 1.90770 1.53286 1.16957 1.82848
1.45975 1.64122 1.13179 1.12535 1.21123 0.97489 0.94322 0.86014
1.21918 1.02653 0.97812 0.92936 1.20448 0.91754 0.89653 0.92501
0.93995 1.22260 1.00846 0.99153 0.98992 1.42650 1.04909 1.20555
1.69509 1.19563 0.92393 0.96801 1.27903 0.90819 1.25506 0.95451
1.02271 1.03821 1.69805 1.00309 1.37859 1.54157 0.85298 0.76428
0.79898 0.78710 1.20126 1.22385 1.20882 1.20120 1.04774 0.94055
0.97699 1.21347 0.95300 1.01193 0.92211 1.21613 1.00653 0.95172
0.97502 1.21477 0.94468 0.94785 0.98964 1.21444 1.03239 1.02058
0.92826 1.17904 0.95824 0.90924 0.86742 1.91501 1.77254 1.80890
1.62810 0.85237 0.93858 0.92397 0.89857 0.88239 0.91680 0.74629
0.94718 0.93026 0.87545 0.91077 0.93644 0.94822 0.90468 0.79710
0.94285 0.82222 0.81524 0.81727 0.84121
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.01 -0.11 9.12 113.37 1.03 0.92 16
2 O -0.35 -6.70 9.08 -148.98 -1.35 -8.05 16
3 C 0.16 3.92 0.80 -12.28 -0.01 3.91 16
4 C -0.14 -3.19 8.64 71.98 0.62 -2.57 16
5 C 0.48 15.61 5.49 87.66 0.48 16.09 16
6 O -0.56 -23.70 13.25 -3.01 -0.04 -23.74 16
7 N -0.71 -20.04 4.27 -463.06 -1.98 -22.01 16
8 C 0.13 4.66 5.56 86.38 0.48 5.14 16
9 C -0.11 -3.37 4.87 30.59 0.15 -3.23 16
10 C 0.16 6.23 2.89 44.99 0.13 6.36 16
11 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16
12 C -0.15 -5.04 9.49 71.98 0.68 -4.36 16
13 N -0.74 -37.17 4.57 -322.94 -1.48 -38.65 16
14 C -0.23 -13.30 9.93 84.04 0.83 -12.47 16
15 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16
16 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16
17 N -0.97 -61.56 13.06 21.65 0.28 -61.28 16
18 Si 0.97 48.05 29.55 68.60 2.03 50.08 16
19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
20 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16
21 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16
22 C -0.16 -4.05 4.42 -19.82 -0.09 -4.14 16
23 C -0.08 -1.43 7.70 22.26 0.17 -1.26 16
24 C -0.13 -1.73 10.04 22.27 0.22 -1.51 16
25 C -0.08 -1.17 10.04 22.26 0.22 -0.95 16
26 C -0.18 -3.90 10.03 22.31 0.22 -3.68 16
27 C 0.11 3.02 6.19 22.38 0.14 3.16 16
28 F -0.15 -5.28 12.89 44.97 0.58 -4.70 16
29 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16
30 H 0.04 0.76 6.23 -2.39 -0.01 0.75 16
31 H 0.06 0.89 5.13 -2.39 -0.01 0.88 16
32 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16
33 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16
34 H 0.06 1.76 6.53 -2.39 -0.02 1.75 16
35 H 0.42 9.03 7.61 -92.71 -0.71 8.33 16
36 H 0.03 1.57 7.75 -2.39 -0.02 1.55 16
37 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16
38 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16
39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16
40 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16
41 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16
42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16
43 H 0.37 20.35 7.80 -92.71 -0.72 19.63 16
44 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16
45 H 0.16 2.03 5.53 -2.91 -0.02 2.02 16
46 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16
47 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16
48 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16
Total: -1.00 -78.57 386.96 3.36 -75.21
By element:
Atomic # 1 Polarization: 36.34 SS G_CDS: -0.44 Total: 35.90 kcal
Atomic # 6 Polarization: -8.51 SS G_CDS: 5.76 Total: -2.75 kcal
Atomic # 7 Polarization: -118.77 SS G_CDS: -3.17 Total: -121.94 kcal
Atomic # 8 Polarization: -30.40 SS G_CDS: -1.39 Total: -31.79 kcal
Atomic # 9 Polarization: -5.28 SS G_CDS: 0.58 Total: -4.70 kcal
Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal
Total: -78.57 3.36 -75.21 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267132496.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.829 kcal
(2) G-P(sol) polarization free energy of solvation -78.572 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.401 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.208 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.037 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds