Wall clock time and date at job start Tue Mar 31 2020 21:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35954 * 116.99826 * 2 1 4 4 C 1.38658 * 120.06375 * 359.97438 * 3 2 1 5 5 C 1.38180 * 119.97048 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.09247 * 359.74282 * 5 4 3 7 7 C 1.38254 * 120.12728 * 0.51279 * 6 5 4 8 8 C 1.50706 * 119.98658 * 179.76259 * 7 6 5 9 9 C 1.52999 * 109.46953 * 264.72706 * 8 7 6 10 10 C 1.50706 * 109.46573 * 179.97438 * 9 8 7 11 11 O 1.21274 * 120.00042 * 359.72068 * 10 9 8 12 12 N 1.34777 * 119.99766 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99854 * 0.02562 * 12 10 9 14 14 C 1.46496 * 120.00266 * 179.97438 * 12 10 9 15 15 H 1.09005 * 109.46746 * 0.02562 * 14 12 10 16 16 C 1.52996 * 109.47303 * 120.00130 * 14 12 10 17 17 C 1.53001 * 109.47536 * 240.00456 * 14 12 10 18 18 N 1.46499 * 109.46977 * 54.99810 * 17 14 12 19 19 C 1.36933 * 119.99887 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00159 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00173 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99611 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00250 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47102 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47076 * 119.99922 * 23 21 19 26 26 H 1.48503 * 109.47402 * 239.99985 * 23 21 19 27 27 C 1.38330 * 120.02605 * 359.48957 * 7 6 5 28 28 F 1.35107 * 120.04704 * 180.23024 * 27 7 6 29 29 H 1.08999 * 109.47257 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47191 * 299.99570 * 1 2 3 31 31 H 1.08998 * 109.47460 * 59.99960 * 1 2 3 32 32 H 1.08004 * 120.01630 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.95649 * 180.02562 * 5 4 3 34 34 H 1.08005 * 119.93807 * 180.27419 * 6 5 4 35 35 H 1.09000 * 109.46974 * 144.72454 * 8 7 6 36 36 H 1.09001 * 109.46547 * 24.72545 * 8 7 6 37 37 H 1.09000 * 109.47486 * 60.00062 * 9 8 7 38 38 H 1.09001 * 109.47362 * 299.99339 * 9 8 7 39 39 H 1.09002 * 109.47335 * 89.99996 * 13 12 10 40 40 H 1.09001 * 109.47076 * 209.99400 * 13 12 10 41 41 H 1.08996 * 109.47068 * 329.99428 * 13 12 10 42 42 H 1.09002 * 109.47605 * 179.97438 * 16 14 12 43 43 H 1.09000 * 109.47163 * 300.00755 * 16 14 12 44 44 H 1.09005 * 109.47109 * 60.00357 * 16 14 12 45 45 H 1.09001 * 109.47120 * 174.99773 * 17 14 12 46 46 H 1.08997 * 109.47014 * 295.00144 * 17 14 12 47 47 H 0.97000 * 119.99917 * 0.02562 * 18 17 14 48 48 H 0.96995 * 119.99362 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9216 3.6053 -0.0011 6 6 3.3023 3.6777 0.0043 7 6 4.0579 2.5199 -0.0005 8 6 5.5627 2.6025 0.0000 9 6 6.0793 2.5041 -1.4368 10 6 7.5840 2.5874 -1.4363 11 8 8.1838 2.7181 -0.3903 12 7 8.2629 2.5217 -2.5987 13 6 7.5380 2.3699 -3.8628 14 6 9.7256 2.6032 -2.5984 15 1 10.0831 2.7138 -1.5746 16 6 10.3078 1.3254 -3.2061 17 6 10.1694 3.8102 -3.4272 18 7 9.5169 5.0189 -2.9178 19 6 9.7632 6.2301 -3.5072 20 1 10.4387 6.2944 -4.3474 21 6 9.1453 7.3755 -3.0242 22 7 8.3224 7.2972 -1.9999 23 14 9.4818 9.0279 -3.8278 24 1 10.4357 8.8468 -4.9515 25 1 8.2104 9.5949 -4.3449 26 1 10.0663 9.9556 -2.8262 27 6 3.4333 1.2856 0.0000 28 9 4.1713 0.1539 0.0000 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2136 2.3200 -0.0005 33 1 1.3341 4.5115 -0.0011 34 1 3.7916 4.6405 0.0083 35 1 5.9714 1.7822 0.5901 36 1 5.8742 3.5527 0.4338 37 1 5.6706 3.3244 -2.0269 38 1 5.7678 1.5539 -1.8707 39 1 7.3021 3.3544 -4.2668 40 1 8.1583 1.8244 -4.5740 41 1 6.6145 1.8180 -3.6880 42 1 11.3961 1.3862 -3.2063 43 1 9.9916 0.4655 -2.6156 44 1 9.9503 1.2144 -4.2299 45 1 11.2511 3.9231 -3.3544 46 1 9.8894 3.6580 -4.4695 47 1 8.9105 4.9612 -2.1629 48 1 7.8904 8.0975 -1.6627 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268065621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:28 Heat of formation + Delta-G solvation = -82.656575 kcal Electronic energy + Delta-G solvation = -29691.583266 eV Core-core repulsion = 25468.887923 eV Total energy + Delta-G solvation = -4222.695343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.81933 -40.24371 -39.65584 -37.93498 -36.35593 -33.99023 -33.72287 -31.87805 -30.47265 -30.14085 -29.32563 -27.60137 -26.57472 -25.60726 -24.78144 -22.72836 -22.56844 -21.51565 -20.42704 -18.55413 -18.28292 -17.25297 -17.12562 -17.01787 -16.76066 -16.35738 -15.71226 -15.43640 -15.16110 -14.93604 -14.68829 -14.65080 -13.94128 -13.81666 -13.58520 -13.40823 -13.11762 -12.96688 -12.69326 -12.51244 -12.43704 -12.24179 -12.22174 -12.01328 -11.84684 -11.78565 -11.72771 -11.41389 -11.24685 -11.14695 -10.85346 -10.84066 -10.73684 -10.38389 -9.99285 -9.67496 -9.35713 -8.87559 -8.82567 -8.38950 -8.15565 -6.86381 -5.71161 -2.99816 0.93684 1.09519 2.85697 3.11234 3.32490 3.44336 3.49035 3.50462 3.52327 4.09347 4.45558 4.58044 4.62096 4.78144 4.79302 4.86657 4.99815 5.05859 5.12670 5.16900 5.19774 5.31229 5.40692 5.44598 5.47784 5.59783 5.64936 5.69640 5.73836 5.83373 5.86060 6.00605 6.03038 6.15598 6.17462 6.19510 6.24011 6.26033 6.37741 6.43474 6.47468 6.53463 6.79614 7.04488 7.07392 7.73124 7.83811 8.46818 8.65552 9.58341 10.17776 10.53595 11.51133 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.002904 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.991636 B = 9639.899506 C =11286.210996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.092 3.908 4 C -0.190 4.190 5 C -0.087 4.087 6 C -0.120 4.120 7 C -0.071 4.071 8 C -0.066 4.066 9 C -0.130 4.130 10 C 0.520 3.480 11 O -0.541 6.541 12 N -0.598 5.598 13 C 0.080 3.920 14 C 0.125 3.875 15 H 0.100 0.900 16 C -0.155 4.155 17 C 0.144 3.856 18 N -0.728 5.728 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.929 5.929 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.069 3.931 28 F -0.131 7.131 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.027 0.973 46 H 0.020 0.980 47 H 0.387 0.613 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.884 -15.234 1.299 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.046 3.954 4 C -0.209 4.209 5 C -0.105 4.105 6 C -0.138 4.138 7 C -0.072 4.072 8 C -0.104 4.104 9 C -0.170 4.170 10 C 0.308 3.692 11 O -0.419 6.419 12 N -0.331 5.331 13 C -0.064 4.064 14 C 0.022 3.978 15 H 0.118 0.882 16 C -0.214 4.214 17 C 0.016 3.984 18 N -0.372 5.372 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.577 5.577 23 Si 0.736 3.264 24 H -0.207 1.207 25 H -0.220 1.220 26 H -0.219 1.219 27 C 0.049 3.951 28 F -0.109 7.109 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.102 0.898 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.044 0.956 46 H 0.037 0.963 47 H 0.221 0.779 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.380 -15.287 1.731 21.754 hybrid contribution -0.310 0.971 -0.394 1.092 sum -15.690 -14.317 1.337 21.282 Atomic orbital electron populations 1.23091 0.78100 1.04123 1.01450 1.86131 1.21570 1.25951 1.88883 1.18968 0.90718 0.85562 1.00158 1.21103 1.00085 0.91590 1.08079 1.21023 0.94607 0.97175 0.97722 1.21061 0.93472 0.98201 1.01115 1.19908 0.97128 0.90805 0.99371 1.20324 0.88010 1.05457 0.96579 1.21604 0.92889 1.04154 0.98360 1.20416 0.89643 0.75750 0.83377 1.90679 1.70491 1.49487 1.31211 1.47657 1.06709 1.72322 1.06429 1.21729 0.96288 1.02182 0.86167 1.21365 0.79173 0.94942 1.02361 0.88238 1.22062 1.01168 0.97245 1.00912 1.20995 0.95774 0.86451 0.95215 1.42306 1.54158 1.01901 1.38841 1.19259 1.21668 0.85131 1.10866 0.91299 1.24736 0.99993 0.97740 0.98534 1.69700 1.33397 1.27792 1.26848 0.86149 0.77250 0.84597 0.78377 1.20660 1.21974 1.21926 1.16823 0.85729 0.82755 1.09747 1.91489 1.76419 1.48782 1.94219 0.88080 0.92509 0.92470 0.84753 0.84954 0.84180 0.89812 0.88733 0.88295 0.89373 0.91687 0.91354 0.91771 0.91473 0.92653 0.92425 0.95580 0.96256 0.77922 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.46 10.36 -19.60 -0.20 -3.67 16 3 C 0.09 1.08 6.69 -39.18 -0.26 0.81 16 4 C -0.19 -1.79 9.04 -39.45 -0.36 -2.14 16 5 C -0.09 -0.83 10.04 -39.59 -0.40 -1.23 16 6 C -0.12 -1.37 9.67 -39.57 -0.38 -1.75 16 7 C -0.07 -0.92 5.14 -104.58 -0.54 -1.45 16 8 C -0.07 -0.95 4.41 -27.88 -0.12 -1.08 16 9 C -0.13 -1.90 4.23 -27.88 -0.12 -2.01 16 10 C 0.52 9.47 7.38 -10.98 -0.08 9.39 16 11 O -0.54 -11.79 15.31 5.56 0.09 -11.71 16 12 N -0.60 -10.14 2.24 -173.93 -0.39 -10.53 16 13 C 0.08 1.09 9.40 59.85 0.56 1.65 16 14 C 0.12 2.20 2.80 -67.93 -0.19 2.01 16 15 H 0.10 2.01 6.90 -51.93 -0.36 1.65 16 16 C -0.16 -2.07 9.17 37.16 0.34 -1.73 16 17 C 0.14 2.97 5.55 -4.04 -0.02 2.94 16 18 N -0.73 -18.95 5.43 -59.91 -0.33 -19.27 16 19 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 23 Si 0.90 22.62 29.55 -169.99 -5.02 17.59 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 C 0.07 0.92 7.25 -39.30 -0.28 0.64 16 28 F -0.13 -1.91 16.41 2.25 0.04 -1.87 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 31 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 32 H 0.13 0.89 6.30 -52.48 -0.33 0.56 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.14 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.08 1.26 7.75 -51.93 -0.40 0.86 16 36 H 0.09 1.47 8.00 -51.93 -0.42 1.06 16 37 H 0.10 1.42 8.11 -51.93 -0.42 1.00 16 38 H 0.09 1.12 7.40 -51.93 -0.38 0.73 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.81 6.43 -51.93 -0.33 0.48 16 41 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.69 6.66 -51.93 -0.35 0.34 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 47 H 0.39 10.88 7.06 -40.82 -0.29 10.59 16 48 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 396.97 15.07 5.98 5.98 Total: -1.00 -35.05 396.97 -7.54 -42.59 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.32 Total: 8.79 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.11 Total: -0.20 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.01 Total: -57.51 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.12 Total: -15.38 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.05 -7.54 -42.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268065621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.067 kcal (2) G-P(sol) polarization free energy of solvation -35.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds