Wall clock time and date at job start Tue Mar 31 2020 21:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.52997 * 109.47232 * 119.99925 * 2 1 3 5 5 N 1.46510 * 109.47089 * 175.00079 * 4 2 1 6 6 C 1.36935 * 119.99877 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.38808 * 119.99865 * 179.97438 * 6 5 4 9 9 N 1.31620 * 119.99962 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00275 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47168 * 89.99461 * 10 8 6 12 12 H 1.48495 * 109.47396 * 209.99943 * 10 8 6 13 13 H 1.48506 * 109.46885 * 329.99892 * 10 8 6 14 14 N 1.46506 * 109.47289 * 239.99872 * 2 1 3 15 15 C 1.46499 * 119.99936 * 299.99999 * 14 2 1 16 16 C 1.34773 * 119.99969 * 119.71964 * 14 2 1 17 17 O 1.21281 * 120.00220 * 0.02562 * 16 14 2 18 18 C 1.50706 * 120.00080 * 180.02562 * 16 14 2 19 19 O 1.42898 * 109.47060 * 180.02562 * 18 16 14 20 20 C 1.42904 * 113.99522 * 179.97438 * 19 18 16 21 21 C 1.53004 * 109.46978 * 180.02562 * 20 19 18 22 22 C 1.50698 * 109.46961 * 180.02562 * 21 20 19 23 23 C 1.38264 * 119.98456 * 269.72450 * 22 21 20 24 24 C 1.38225 * 120.04752 * 179.73217 * 23 22 21 25 25 C 1.38216 * 120.02691 * 0.54071 * 24 23 22 26 26 C 1.38436 * 119.97534 * 359.73224 * 25 24 23 27 27 F 1.35100 * 120.03109 * 180.02562 * 26 25 24 28 28 C 1.38172 * 119.98682 * 90.00295 * 22 21 20 29 29 H 1.09002 * 109.47153 * 300.00084 * 1 2 3 30 30 H 1.08996 * 109.46952 * 60.00255 * 1 2 3 31 31 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46992 * 294.99548 * 4 2 1 33 33 H 1.09002 * 109.47223 * 55.00179 * 4 2 1 34 34 H 0.96998 * 119.99795 * 359.97438 * 5 4 2 35 35 H 0.97005 * 120.00234 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.47269 * 89.99349 * 15 14 2 37 37 H 1.08994 * 109.47173 * 210.00167 * 15 14 2 38 38 H 1.09005 * 109.47077 * 330.00338 * 15 14 2 39 39 H 1.09004 * 109.46762 * 300.00389 * 18 16 14 40 40 H 1.08998 * 109.46924 * 59.99727 * 18 16 14 41 41 H 1.08994 * 109.47141 * 299.99874 * 20 19 18 42 42 H 1.08998 * 109.46913 * 60.00229 * 20 19 18 43 43 H 1.09006 * 109.46584 * 300.00018 * 21 20 19 44 44 H 1.09002 * 109.47042 * 59.99800 * 21 20 19 45 45 H 1.07993 * 119.97604 * 359.97438 * 23 22 21 46 46 H 1.08006 * 119.98793 * 180.27863 * 24 23 22 47 47 H 1.08002 * 120.01752 * 179.75268 * 25 24 23 48 48 H 1.08002 * 120.01784 * 359.96949 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1840 -1.4378 2.2072 7 1 3.6469 -1.8430 3.0520 8 6 5.5673 -1.5379 2.1513 9 7 6.2246 -2.1261 3.1282 10 14 6.4962 -0.8377 0.6897 11 1 6.8578 0.5762 0.9641 12 1 7.7317 -1.6296 0.4628 13 1 5.6373 -0.9031 -0.5201 14 7 2.0184 -0.6907 -1.1962 15 6 1.6645 -2.0932 -1.4280 16 6 2.7885 -0.0340 -2.0862 17 8 3.0777 1.1284 -1.8966 18 6 3.2905 -0.7443 -3.3169 19 8 4.0795 0.1556 -4.0977 20 6 4.6072 -0.4219 -5.2936 21 6 5.4309 0.6257 -6.0454 22 6 5.9868 0.0169 -7.3069 23 6 7.2244 -0.5994 -7.2895 24 6 7.7332 -1.1631 -8.4445 25 6 7.0101 -1.1015 -9.6208 26 6 5.7733 -0.4797 -9.6407 27 9 5.0653 -0.4193 -10.7897 28 6 5.2622 0.0798 -8.4816 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -0.1582 2.1369 33 1 1.6054 -1.7198 1.2951 34 1 3.9824 -0.4627 0.4315 35 1 7.1913 -2.1964 3.0890 36 1 0.7375 -2.1445 -1.9992 37 1 2.4629 -2.5819 -1.9862 38 1 1.5295 -2.5969 -0.4707 39 1 3.8999 -1.5981 -3.0205 40 1 2.4425 -1.0909 -3.9076 41 1 5.2438 -1.2689 -5.0379 42 1 3.7868 -0.7617 -5.9257 43 1 4.7946 1.4730 -6.3011 44 1 6.2513 0.9651 -5.4131 45 1 7.7923 -0.6438 -6.3720 46 1 8.6980 -1.6482 -8.4288 47 1 7.4095 -1.5385 -10.5241 48 1 4.2973 0.5648 -8.4959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268065965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:45 Heat of formation + Delta-G solvation = -106.737511 kcal Electronic energy + Delta-G solvation = -28870.084688 eV Core-core repulsion = 24646.345117 eV Total energy + Delta-G solvation = -4223.739571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.93556 -41.21899 -40.28000 -38.88342 -37.76458 -35.96647 -34.51673 -33.77927 -32.37688 -31.57553 -30.17789 -28.32625 -27.77465 -27.59098 -24.69355 -24.12335 -23.71104 -22.60475 -22.14555 -20.38757 -19.52177 -18.57570 -18.35785 -17.72655 -17.44492 -17.22938 -17.15204 -16.98022 -16.67793 -16.61795 -16.27608 -15.80606 -15.34552 -15.02667 -14.85035 -14.57207 -14.38974 -14.20359 -14.14273 -14.03820 -13.80167 -13.67299 -13.56373 -13.32068 -13.18754 -13.00492 -12.89665 -12.76236 -12.43476 -12.32881 -12.29114 -12.23155 -11.99477 -11.88049 -11.77262 -11.07551 -10.79461 -10.75751 -9.98524 -9.69745 -9.65824 -9.32730 -8.07658 -5.38711 0.10838 0.18868 1.27221 1.34412 1.38128 1.51024 1.71065 2.40687 2.50925 2.81002 3.23313 3.24558 3.46154 3.64665 3.73134 3.78487 3.97308 4.03529 4.05393 4.12228 4.17552 4.19989 4.23759 4.25757 4.33080 4.36697 4.38064 4.41011 4.72915 4.74438 4.77952 4.82492 4.83842 4.91242 5.01757 5.02492 5.07922 5.12259 5.12974 5.29928 5.33026 5.50667 5.55593 5.72584 5.89339 5.99886 6.17265 6.37527 7.02865 7.11880 7.80607 7.98051 9.13828 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012567 B = 0.002502 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.543393 B =11189.930728 C =12853.971747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.127 3.873 3 H 0.071 0.929 4 C 0.143 3.857 5 N -0.757 5.757 6 C -0.225 4.225 7 H 0.067 0.933 8 C -0.055 4.055 9 N -0.978 5.978 10 Si 0.944 3.056 11 H -0.293 1.293 12 H -0.285 1.285 13 H -0.267 1.267 14 N -0.599 5.599 15 C 0.068 3.932 16 C 0.501 3.499 17 O -0.577 6.577 18 C 0.050 3.950 19 O -0.396 6.396 20 C 0.063 3.937 21 C -0.078 4.078 22 C -0.056 4.056 23 C -0.130 4.130 24 C -0.086 4.086 25 C -0.158 4.158 26 C 0.079 3.921 27 F -0.150 7.150 28 C -0.155 4.155 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.360 0.640 35 H 0.258 0.742 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.141 0.859 46 H 0.159 0.841 47 H 0.152 0.848 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.761 -1.083 -27.199 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.023 3.977 3 H 0.090 0.910 4 C 0.017 3.983 5 N -0.402 5.402 6 C -0.356 4.356 7 H 0.085 0.915 8 C -0.247 4.247 9 N -0.629 5.629 10 Si 0.773 3.227 11 H -0.221 1.221 12 H -0.211 1.211 13 H -0.192 1.192 14 N -0.333 5.333 15 C -0.073 4.073 16 C 0.289 3.711 17 O -0.457 6.457 18 C -0.030 4.030 19 O -0.315 6.315 20 C -0.013 4.013 21 C -0.115 4.115 22 C -0.056 4.056 23 C -0.148 4.148 24 C -0.104 4.104 25 C -0.177 4.177 26 C 0.060 3.940 27 F -0.128 7.128 28 C -0.174 4.174 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.192 0.808 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.136 0.864 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.159 0.841 46 H 0.177 0.823 47 H 0.170 0.830 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.612 -0.414 -26.895 27.699 hybrid contribution 0.863 0.271 -0.547 1.057 sum -5.750 -0.143 -27.442 28.038 Atomic orbital electron populations 1.21948 0.90914 1.03883 1.03198 1.21344 0.96463 0.96528 0.83352 0.91045 1.21238 0.82765 0.98662 0.95664 1.42736 1.03485 1.70794 1.23214 1.19069 0.89963 1.27730 0.98867 0.91525 1.25289 0.97248 1.01953 1.00191 1.69840 1.07470 1.50901 1.34665 0.85587 0.78656 0.77565 0.80861 1.22065 1.21131 1.19230 1.47857 1.50147 1.13765 1.21520 1.22086 1.02280 0.79285 1.03660 1.20932 0.78049 0.86838 0.85243 1.90677 1.58379 1.19086 1.77534 1.22353 0.97395 0.92232 0.90975 1.87948 1.69064 1.38332 1.36174 1.22667 0.97522 0.96079 0.85002 1.20434 1.00224 0.97985 0.92904 1.19514 0.94677 0.97745 0.93684 1.21469 0.95470 0.97989 0.99874 1.21343 1.00568 0.97506 0.90979 1.21453 0.93584 1.01509 1.01107 1.17927 0.92168 1.01911 0.81997 1.91481 1.78338 1.94832 1.48177 1.21178 1.02008 1.02698 0.91475 0.90200 0.91716 0.90172 0.94477 0.93523 0.80786 0.93270 0.88978 0.90246 0.90530 0.89124 0.86362 0.92076 0.91023 0.89711 0.90055 0.84087 0.82293 0.83038 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.19 71.98 0.66 -2.26 16 2 C 0.13 3.89 2.80 44.99 0.13 4.01 16 3 H 0.07 2.64 6.90 -2.39 -0.02 2.63 16 4 C 0.14 5.29 5.50 86.38 0.48 5.77 16 5 N -0.76 -36.53 5.24 -343.44 -1.80 -38.33 16 6 C -0.23 -12.96 10.47 84.03 0.88 -12.08 16 7 H 0.07 4.09 8.06 -2.91 -0.02 4.07 16 8 C -0.05 -3.30 5.50 84.86 0.47 -2.84 16 9 N -0.98 -63.01 13.97 21.65 0.30 -62.71 16 10 Si 0.94 48.65 27.74 68.60 1.90 50.56 16 11 H -0.29 -15.52 7.11 99.48 0.71 -14.81 16 12 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 13 H -0.27 -13.01 6.52 99.48 0.65 -12.37 16 14 N -0.60 -17.21 2.24 -822.59 -1.84 -19.06 16 15 C 0.07 1.35 9.29 127.77 1.19 2.54 16 16 C 0.50 16.71 7.47 87.66 0.65 17.37 16 17 O -0.58 -25.02 15.83 16.00 0.25 -24.76 16 18 C 0.05 1.22 4.97 71.24 0.35 1.57 16 19 O -0.40 -11.18 9.88 -129.94 -1.28 -12.46 16 20 C 0.06 1.21 5.92 71.98 0.43 1.64 16 21 C -0.08 -1.40 5.71 29.85 0.17 -1.23 16 22 C -0.06 -0.89 5.13 -19.87 -0.10 -0.99 16 23 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 24 C -0.09 -1.01 10.04 22.26 0.22 -0.79 16 25 C -0.16 -2.09 10.03 22.31 0.22 -1.87 16 26 C 0.08 1.32 7.30 22.38 0.16 1.49 16 27 F -0.15 -2.82 17.27 44.97 0.78 -2.04 16 28 C -0.15 -2.50 9.68 22.31 0.22 -2.28 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.35 7.67 -2.39 -0.02 1.33 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.60 6.88 -2.39 -0.02 1.58 16 34 H 0.36 17.89 4.94 -92.71 -0.46 17.43 16 35 H 0.26 15.88 8.31 -92.70 -0.77 15.11 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.38 6.45 -2.39 -0.02 1.37 16 38 H 0.08 1.66 6.53 -2.38 -0.02 1.64 16 39 H 0.09 2.04 7.41 -2.39 -0.02 2.02 16 40 H 0.12 1.88 8.10 -2.39 -0.02 1.86 16 41 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.08 1.52 8.08 -2.38 -0.02 1.50 16 44 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 45 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 46 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 47 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 48 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -80.77 400.12 5.10 -75.67 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.44 Total: 24.70 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 6.34 Total: 8.43 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -3.34 Total: -120.09 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.03 Total: -37.22 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 1.90 Total: 50.56 kcal Total: -80.77 5.10 -75.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268065965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.065 kcal (2) G-P(sol) polarization free energy of solvation -80.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds