Wall clock time and date at job start Tue Mar 31 2020 21:09:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08995 * 109.47028 * 2 1
4 4 O 1.42890 * 109.46965 * 120.00441 * 2 1 3
5 5 C 1.42899 * 113.99952 * 269.99435 * 4 2 1
6 6 C 1.50709 * 109.47369 * 180.02562 * 5 4 2
7 7 C 1.38236 * 119.97268 * 269.73035 * 6 5 4
8 8 C 1.38202 * 120.02397 * 179.72306 * 7 6 5
9 9 C 1.38460 * 119.97077 * 0.57037 * 8 7 6
10 10 F 1.35105 * 120.02398 * 179.68435 * 9 8 7
11 11 C 1.38453 * 119.95095 * 359.70263 * 9 8 7
12 12 C 1.38199 * 119.97370 * 359.97438 * 11 9 8
13 13 C 1.50707 * 109.46680 * 240.00579 * 2 1 3
14 14 O 1.21283 * 119.99209 * 255.52894 * 13 2 1
15 15 N 1.34770 * 120.00303 * 75.52864 * 13 2 1
16 16 C 1.46499 * 119.99949 * 5.36157 * 15 13 2
17 17 C 1.46500 * 119.99934 * 185.36342 * 15 13 2
18 18 H 1.09001 * 109.47336 * 359.97438 * 17 15 13
19 19 C 1.53001 * 109.46875 * 120.00366 * 17 15 13
20 20 C 1.53002 * 109.46864 * 239.99894 * 17 15 13
21 21 N 1.46493 * 109.47139 * 55.00117 * 20 17 15
22 22 C 1.36939 * 120.00021 * 179.97438 * 21 20 17
23 23 H 1.07995 * 119.99930 * 359.97438 * 22 21 20
24 24 C 1.38816 * 120.00115 * 180.02562 * 22 21 20
25 25 N 1.31618 * 120.00216 * 179.97438 * 24 22 21
26 26 Si 1.86800 * 119.99774 * 359.97438 * 24 22 21
27 27 H 1.48500 * 109.47179 * 90.00171 * 26 24 22
28 28 H 1.48502 * 109.46870 * 210.00087 * 26 24 22
29 29 H 1.48496 * 109.47327 * 330.00051 * 26 24 22
30 30 H 1.09001 * 109.47347 * 175.18663 * 1 2 3
31 31 H 1.08997 * 109.46940 * 295.17958 * 1 2 3
32 32 H 1.09003 * 109.47365 * 55.17757 * 1 2 3
33 33 H 1.09002 * 109.47531 * 300.00432 * 5 4 2
34 34 H 1.09001 * 109.47026 * 60.00860 * 5 4 2
35 35 H 1.08001 * 119.99432 * 359.97438 * 7 6 5
36 36 H 1.08003 * 120.01377 * 180.25654 * 8 7 6
37 37 H 1.07998 * 120.01580 * 179.97438 * 11 9 8
38 38 H 1.08003 * 119.98561 * 179.97438 * 12 11 9
39 39 H 1.09008 * 109.47057 * 84.66710 * 16 15 13
40 40 H 1.09006 * 109.47327 * 204.66098 * 16 15 13
41 41 H 1.08995 * 109.47403 * 324.66704 * 16 15 13
42 42 H 1.09007 * 109.46820 * 299.99285 * 19 17 15
43 43 H 1.08998 * 109.47866 * 59.99998 * 19 17 15
44 44 H 1.09000 * 109.46852 * 180.02562 * 19 17 15
45 45 H 1.09002 * 109.46480 * 175.00045 * 20 17 15
46 46 H 1.09001 * 109.47227 * 294.99821 * 20 17 15
47 47 H 0.97001 * 120.00048 * 359.97438 * 21 20 17
48 48 H 0.96997 * 119.99883 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 8 2.0063 -0.6737 1.1667
5 6 2.2001 0.1828 2.2940
6 6 2.7015 -0.6284 3.4610
7 6 1.8025 -1.1954 4.3449
8 6 2.2609 -1.9443 5.4122
9 6 3.6215 -2.1166 5.6025
10 9 4.0710 -2.8432 6.6492
11 6 4.5211 -1.5435 4.7198
12 6 4.0601 -0.8007 3.6494
13 6 2.0323 -0.7103 -1.2306
14 8 2.4818 -1.8332 -1.1415
15 7 1.9819 -0.0978 -2.4300
16 6 1.5493 1.2988 -2.5217
17 6 2.3596 -0.8287 -3.6422
18 1 2.6511 -1.8452 -3.3776
19 6 1.1697 -0.8724 -4.6029
20 6 3.5355 -0.1212 -4.3187
21 7 4.6332 0.0270 -3.3600
22 6 5.7991 0.6350 -3.7426
23 1 5.9094 1.0049 -4.7512
24 6 6.8395 0.7749 -2.8343
25 7 7.9602 1.3589 -3.2022
26 14 6.6489 0.1345 -1.0900
27 1 7.1133 -1.2746 -1.0265
28 1 7.4617 0.9656 -0.1660
29 1 5.2203 0.2032 -0.6907
30 1 -0.3634 -1.0240 -0.0862
31 1 -0.3633 0.4372 0.9300
32 1 -0.3634 0.5868 -0.8436
33 1 2.9320 0.9512 2.0450
34 1 1.2539 0.6545 2.5589
35 1 0.7414 -1.0565 4.1992
36 1 1.5583 -2.3906 6.1003
37 1 5.5825 -1.6770 4.8675
38 1 4.7617 -0.3532 2.9609
39 1 2.3989 1.9554 -2.3332
40 1 1.1549 1.4924 -3.5192
41 1 0.7726 1.4880 -1.7808
42 1 0.3319 -1.3765 -4.1210
43 1 0.8786 0.1441 -4.8675
44 1 1.4506 -1.4166 -5.5046
45 1 3.8738 -0.7120 -5.1700
46 1 3.2181 0.8632 -4.6627
47 1 4.5343 -0.3056 -2.4542
48 1 8.6870 1.4570 -2.5674
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001268096341.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:09:32
Heat of formation + Delta-G solvation = -100.235971 kcal
Electronic energy + Delta-G solvation = -29999.618383 eV
Core-core repulsion = 25776.160740 eV
Total energy + Delta-G solvation = -4223.457643 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-50.00002 -41.41635 -40.31901 -38.80813 -37.71703 -36.02941 -34.16408 -33.15047
-32.30380 -32.20722 -31.13747 -27.92555 -27.59601 -27.04790 -25.38639 -24.13395
-24.04094 -22.58158 -22.24537 -20.40115 -19.55385 -18.85968 -18.57697 -17.88772
-17.57050 -17.16036 -16.78200 -16.70779 -16.66957 -16.44527 -16.09308 -15.60121
-15.34737 -14.96072 -14.80768 -14.64387 -14.53728 -14.24458 -14.15300 -14.02747
-13.83545 -13.71982 -13.38860 -13.33747 -13.30071 -13.09448 -12.95734 -12.70276
-12.64663 -12.41744 -12.27767 -12.12352 -12.05896 -11.89832 -11.74983 -11.11151
-11.01034 -10.49096 -10.16773 -9.75981 -9.64930 -9.34250 -8.10301 -5.40515
-0.06048 0.17478 1.22425 1.30095 1.34566 1.50880 1.77464 2.37321
2.38929 2.98713 3.17286 3.22061 3.39543 3.61462 3.63739 3.73212
3.86288 3.91232 3.98720 4.03635 4.11476 4.18545 4.25427 4.27093
4.36606 4.38297 4.51605 4.57133 4.75176 4.79577 4.80160 4.83882
4.85663 4.90077 4.91011 5.00456 5.04304 5.13078 5.14013 5.23702
5.32053 5.42905 5.57187 5.70907 5.80210 6.01117 6.15107 6.39834
7.00984 7.14059 7.79369 7.96511 9.11298
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.010261 B = 0.003652 C = 0.002876
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2728.016911 B = 7665.220416 C = 9732.197076
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.069 3.931
3 H 0.102 0.898
4 O -0.384 6.384
5 C 0.095 3.905
6 C -0.110 4.110
7 C -0.063 4.063
8 C -0.154 4.154
9 C 0.086 3.914
10 F -0.146 7.146
11 C -0.166 4.166
12 C -0.088 4.088
13 C 0.501 3.499
14 O -0.578 6.578
15 N -0.598 5.598
16 C 0.063 3.937
17 C 0.126 3.874
18 H 0.069 0.931
19 C -0.142 4.142
20 C 0.144 3.856
21 N -0.758 5.758
22 C -0.225 4.225
23 H 0.068 0.932
24 C -0.052 4.052
25 N -0.976 5.976
26 Si 0.940 3.060
27 H -0.296 1.296
28 H -0.284 1.284
29 H -0.269 1.269
30 H 0.056 0.944
31 H 0.097 0.903
32 H 0.099 0.901
33 H 0.059 0.941
34 H 0.102 0.898
35 H 0.166 0.834
36 H 0.163 0.837
37 H 0.143 0.857
38 H 0.125 0.875
39 H 0.045 0.955
40 H 0.100 0.900
41 H 0.103 0.897
42 H 0.067 0.933
43 H 0.082 0.918
44 H 0.079 0.921
45 H 0.036 0.964
46 H 0.046 0.954
47 H 0.360 0.640
48 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.616 0.596 13.113 27.019
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.008 3.992
3 H 0.119 0.881
4 O -0.303 6.303
5 C 0.019 3.981
6 C -0.110 4.110
7 C -0.081 4.081
8 C -0.172 4.172
9 C 0.067 3.933
10 F -0.125 7.125
11 C -0.185 4.185
12 C -0.107 4.107
13 C 0.290 3.710
14 O -0.458 6.458
15 N -0.331 5.331
16 C -0.078 4.078
17 C 0.022 3.978
18 H 0.087 0.913
19 C -0.200 4.200
20 C 0.017 3.983
21 N -0.403 5.403
22 C -0.356 4.356
23 H 0.086 0.914
24 C -0.244 4.244
25 N -0.627 5.627
26 Si 0.770 3.230
27 H -0.224 1.224
28 H -0.210 1.210
29 H -0.195 1.195
30 H 0.075 0.925
31 H 0.116 0.884
32 H 0.117 0.883
33 H 0.077 0.923
34 H 0.120 0.880
35 H 0.183 0.817
36 H 0.180 0.820
37 H 0.160 0.840
38 H 0.143 0.857
39 H 0.064 0.936
40 H 0.119 0.881
41 H 0.122 0.878
42 H 0.086 0.914
43 H 0.101 0.899
44 H 0.098 0.902
45 H 0.054 0.946
46 H 0.064 0.936
47 H 0.192 0.808
48 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -23.203 -0.088 13.043 26.618
hybrid contribution 1.347 -0.463 1.057 1.774
sum -21.855 -0.552 14.100 26.015
Atomic orbital electron populations
1.22239 0.90068 1.03712 1.05557 1.22110 0.97436 0.96146 0.83469
0.88072 1.88085 1.87123 1.35445 1.19660 1.21632 1.01770 0.91237
0.83462 1.19850 0.93415 1.01031 0.96737 1.21238 1.01183 0.93692
0.91989 1.21448 0.93420 1.01611 1.00738 1.17982 0.93667 0.95129
0.86499 1.91485 1.90102 1.75440 1.55433 1.21291 1.00944 1.00400
0.95857 1.21127 0.96082 0.97105 0.96358 1.21171 0.77849 0.86413
0.85614 1.90677 1.46950 1.21970 1.86169 1.47845 1.65509 1.14173
1.05594 1.22208 1.00411 0.79391 1.05808 1.21353 0.95426 0.95856
0.85149 0.91302 1.21975 0.95678 1.04003 0.98358 1.21245 0.86691
0.98549 0.91822 1.42762 1.14199 1.71879 1.11476 1.19095 0.91009
1.28263 0.97220 0.91377 1.25230 0.96056 1.01968 1.01118 1.69827
1.05966 1.50917 1.36028 0.85645 0.77496 0.77372 0.82513 1.22355
1.20959 1.19467 0.92506 0.88381 0.88285 0.92277 0.88026 0.81665
0.81964 0.83960 0.85717 0.93586 0.88134 0.87829 0.91417 0.89895
0.90241 0.94637 0.93585 0.80795 0.93274
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.31 9.28 71.98 0.67 -1.65 16
2 C 0.07 1.68 2.30 29.85 0.07 1.75 16
3 H 0.10 2.06 6.97 -2.39 -0.02 2.04 16
4 O -0.38 -11.05 9.55 -130.42 -1.25 -12.30 16
5 C 0.09 1.95 5.87 71.24 0.42 2.37 16
6 C -0.11 -2.45 5.51 -19.86 -0.11 -2.55 16
7 C -0.06 -1.10 9.70 22.26 0.22 -0.88 16
8 C -0.15 -2.75 10.03 22.31 0.22 -2.53 16
9 C 0.09 1.94 7.30 22.37 0.16 2.10 16
10 F -0.15 -3.41 17.27 44.97 0.78 -2.64 16
11 C -0.17 -3.96 10.03 22.31 0.22 -3.74 16
12 C -0.09 -2.23 9.70 22.26 0.22 -2.02 16
13 C 0.50 16.81 6.66 87.66 0.58 17.39 16
14 O -0.58 -25.63 15.91 15.52 0.25 -25.39 16
15 N -0.60 -17.13 2.24 -822.57 -1.85 -18.98 16
16 C 0.06 1.24 8.99 127.77 1.15 2.39 16
17 C 0.13 3.86 2.79 44.99 0.13 3.99 16
18 H 0.07 2.57 6.91 -2.39 -0.02 2.56 16
19 C -0.14 -2.82 9.18 71.98 0.66 -2.16 16
20 C 0.14 5.37 5.55 86.38 0.48 5.85 16
21 N -0.76 -37.30 5.24 -343.46 -1.80 -39.10 16
22 C -0.22 -13.11 10.47 84.03 0.88 -12.23 16
23 H 0.07 4.22 8.06 -2.91 -0.02 4.20 16
24 C -0.05 -3.15 5.50 84.86 0.47 -2.68 16
25 N -0.98 -63.45 13.97 21.65 0.30 -63.15 16
26 Si 0.94 49.68 27.73 68.60 1.90 51.58 16
27 H -0.30 -16.17 7.11 99.48 0.71 -15.46 16
28 H -0.28 -14.48 7.11 99.48 0.71 -13.78 16
29 H -0.27 -13.61 6.52 99.48 0.65 -12.97 16
30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
31 H 0.10 0.90 7.79 -2.39 -0.02 0.88 16
32 H 0.10 0.96 6.10 -2.39 -0.01 0.94 16
33 H 0.06 1.23 8.03 -2.39 -0.02 1.21 16
34 H 0.10 1.25 7.73 -2.39 -0.02 1.23 16
35 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16
36 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16
37 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16
38 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16
39 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16
40 H 0.10 1.51 6.44 -2.38 -0.02 1.49 16
41 H 0.10 1.24 4.75 -2.39 -0.01 1.22 16
42 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16
43 H 0.08 1.29 6.67 -2.39 -0.02 1.28 16
44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16
45 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16
46 H 0.05 1.59 7.84 -2.39 -0.02 1.57 16
47 H 0.36 18.37 4.93 -92.71 -0.46 17.92 16
48 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16
Total: -1.00 -84.13 394.97 5.23 -78.91
By element:
Atomic # 1 Polarization: 25.19 SS G_CDS: 0.46 Total: 25.65 kcal
Atomic # 6 Polarization: -1.03 SS G_CDS: 6.43 Total: 5.41 kcal
Atomic # 7 Polarization: -117.88 SS G_CDS: -3.34 Total: -121.22 kcal
Atomic # 8 Polarization: -36.68 SS G_CDS: -1.00 Total: -37.68 kcal
Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.64 kcal
Atomic # 14 Polarization: 49.68 SS G_CDS: 1.90 Total: 51.58 kcal
Total: -84.13 5.23 -78.91 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001268096341.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.329 kcal
(2) G-P(sol) polarization free energy of solvation -84.134 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.464 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.906 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.236 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds