Wall clock time and date at job start Tue Mar 31 2020 21:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47111 * 2 1 4 4 C 1.52994 * 109.47092 * 119.99825 * 2 1 3 5 5 H 1.08997 * 109.47683 * 300.00095 * 4 2 1 6 6 C 1.52999 * 109.47514 * 60.00059 * 4 2 1 7 7 N 1.46499 * 109.47631 * 174.99474 * 6 4 2 8 8 C 1.34779 * 119.99890 * 179.97438 * 7 6 4 9 9 O 1.21279 * 120.00339 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99640 * 180.02562 * 8 7 6 11 11 H 1.08999 * 109.47269 * 304.99389 * 10 8 7 12 12 C 1.53001 * 109.47551 * 65.00020 * 10 8 7 13 13 O 1.42902 * 109.47187 * 185.00136 * 10 8 7 14 14 C 1.35949 * 117.00444 * 155.13601 * 13 10 8 15 15 C 1.38664 * 120.06185 * 5.41641 * 14 13 10 16 16 C 1.38182 * 119.96651 * 179.72458 * 15 14 13 17 17 C 1.38257 * 120.09999 * 0.55415 * 16 15 14 18 18 C 1.38263 * 120.12094 * 359.72357 * 17 16 15 19 19 C 1.38326 * 120.03309 * 359.97438 * 18 17 16 20 20 F 1.35101 * 120.04998 * 180.02562 * 19 18 17 21 21 N 1.46508 * 109.47329 * 180.02562 * 4 2 1 22 22 C 1.36931 * 119.99937 * 84.99737 * 21 4 2 23 23 H 1.08000 * 120.00173 * 0.02562 * 22 21 4 24 24 C 1.38812 * 119.99859 * 179.72797 * 22 21 4 25 25 N 1.31620 * 120.00032 * 0.27668 * 24 22 21 26 26 Si 1.86803 * 119.99858 * 180.27464 * 24 22 21 27 27 H 1.48497 * 109.46964 * 60.00392 * 26 24 22 28 28 H 1.48503 * 109.46657 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47606 * 300.00321 * 26 24 22 30 30 H 1.09005 * 109.47107 * 299.99942 * 1 2 3 31 31 H 1.08997 * 109.47396 * 60.00122 * 1 2 3 32 32 H 1.08998 * 109.46974 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.46960 * 239.99942 * 2 1 3 34 34 H 1.09000 * 109.47008 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.46891 * 300.00187 * 3 2 1 36 36 H 1.09005 * 109.47088 * 60.00047 * 3 2 1 37 37 H 1.09000 * 109.46976 * 294.99850 * 6 4 2 38 38 H 1.09006 * 109.46877 * 54.99563 * 6 4 2 39 39 H 0.96995 * 119.99779 * 0.02562 * 7 6 4 40 40 H 1.08994 * 109.47055 * 59.99782 * 12 10 8 41 41 H 1.08995 * 109.47351 * 179.97438 * 12 10 8 42 42 H 1.08999 * 109.46525 * 299.99909 * 12 10 8 43 43 H 1.08003 * 120.00952 * 359.97438 * 15 14 13 44 44 H 1.08005 * 119.94693 * 180.27685 * 16 15 14 45 45 H 1.07998 * 119.93868 * 179.74520 * 17 16 15 46 46 H 1.08001 * 119.98154 * 179.97438 * 18 17 16 47 47 H 0.97000 * 119.99642 * 265.00661 * 21 4 2 48 48 H 0.96997 * 120.00264 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2493 7 7 2.1143 -2.8882 2.3807 8 6 1.8053 -4.1844 2.5827 9 8 1.0441 -4.7513 1.8277 10 6 2.4059 -4.9295 3.7469 11 1 3.4924 -4.8531 3.7057 12 6 1.9011 -4.3213 5.0569 13 8 2.0224 -6.3046 3.6813 14 6 2.8394 -7.2030 4.2925 15 6 3.9236 -6.7624 5.0361 16 6 4.7494 -7.6771 5.6612 17 6 4.5030 -9.0319 5.5369 18 6 3.4264 -9.4758 4.7917 19 6 2.5927 -8.5645 4.1689 20 9 1.5402 -8.9978 3.4410 21 7 3.5051 -0.7207 1.2496 22 6 4.1892 0.3543 1.7510 23 1 3.6488 1.2016 2.1466 24 6 5.5773 0.3523 1.7565 25 7 6.2359 -0.6804 1.2748 26 14 6.5106 1.8155 2.4476 27 1 6.1465 2.0057 3.8746 28 1 7.9707 1.5680 2.3375 29 1 6.1566 3.0361 1.6795 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 0.4437 -2.1650 1.3389 38 1 1.8184 -2.6510 0.3179 39 1 2.7228 -2.4348 2.9848 40 1 0.8146 -4.3978 5.0981 41 1 2.3351 -4.8604 5.8989 42 1 2.1936 -3.2724 5.1069 43 1 4.1202 -5.7045 5.1299 44 1 5.5913 -7.3334 6.2440 45 1 5.1525 -9.7446 6.0232 46 1 3.2362 -10.5346 4.6958 47 1 3.9904 -1.4818 0.8945 48 1 7.2059 -0.6817 1.2783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268214568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:52 Heat of formation + Delta-G solvation = -89.411055 kcal Electronic energy + Delta-G solvation = -29618.792351 eV Core-core repulsion = 25395.804111 eV Total energy + Delta-G solvation = -4222.988239 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.82904 -40.63210 -39.25814 -37.68858 -37.04598 -34.03027 -33.17873 -32.25191 -30.88850 -30.40285 -29.74614 -28.03159 -26.16930 -24.96703 -23.85464 -23.04862 -22.54271 -21.66962 -20.17895 -19.31112 -18.72780 -17.74048 -17.18489 -16.98060 -16.24411 -16.12133 -15.77836 -15.46159 -15.11321 -15.02347 -14.59752 -14.45093 -14.19645 -13.97672 -13.52132 -13.36405 -13.33866 -13.11711 -12.83912 -12.64789 -12.52805 -12.18699 -12.12951 -12.07004 -11.79896 -11.66053 -11.32708 -11.17832 -11.07244 -10.99885 -10.87309 -10.68392 -10.34591 -10.16865 -10.01693 -9.62531 -9.56229 -9.15465 -8.98135 -8.72385 -8.37864 -7.10074 -5.88249 -3.17902 0.89948 1.03616 2.54020 2.75839 3.34558 3.36234 3.40564 3.41670 3.62514 4.07833 4.47574 4.50500 4.52660 4.66970 4.74524 4.85474 4.97449 4.99313 5.20320 5.28656 5.32399 5.43402 5.45239 5.48027 5.59530 5.70798 5.74360 5.82716 5.85017 5.88876 5.94786 5.95775 6.13883 6.15107 6.20260 6.33861 6.39807 6.41544 6.48922 6.58315 6.61580 6.83524 7.02510 7.10251 7.25688 7.60030 7.78574 8.28789 8.42057 9.40925 9.95151 10.31285 11.33304 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.002946 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.372625 B = 9503.052697 C =11352.899801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.115 3.885 7 N -0.705 5.705 8 C 0.516 3.484 9 O -0.529 6.529 10 C 0.064 3.936 11 H 0.103 0.897 12 C -0.175 4.175 13 O -0.277 6.277 14 C 0.102 3.898 15 C -0.185 4.185 16 C -0.088 4.088 17 C -0.133 4.133 18 C -0.118 4.118 19 C 0.069 3.931 20 F -0.131 7.131 21 N -0.722 5.722 22 C -0.239 4.239 23 H 0.073 0.927 24 C -0.009 4.009 25 N -0.929 5.929 26 Si 0.903 3.097 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.411 0.589 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.142 0.858 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.141 0.859 47 H 0.385 0.615 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.792 -11.114 9.274 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.060 3.940 5 H 0.072 0.928 6 C -0.009 4.009 7 N -0.359 5.359 8 C 0.299 3.701 9 O -0.405 6.405 10 C 0.005 3.995 11 H 0.121 0.879 12 C -0.233 4.233 13 O -0.189 6.189 14 C 0.055 3.945 15 C -0.204 4.204 16 C -0.106 4.106 17 C -0.151 4.151 18 C -0.137 4.137 19 C 0.049 3.951 20 F -0.109 7.109 21 N -0.363 5.363 22 C -0.370 4.370 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.577 5.577 26 Si 0.734 3.266 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.247 0.753 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.160 0.840 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.159 0.841 47 H 0.219 0.781 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.488 -11.402 8.666 15.722 hybrid contribution 1.078 0.910 0.368 1.458 sum -5.409 -10.492 9.034 14.864 Atomic orbital electron populations 1.21946 0.96821 1.00999 1.00976 1.21727 0.93575 0.97815 1.00011 1.21818 1.04202 0.94584 0.99027 1.20551 0.86407 0.90947 0.96120 0.92764 1.21792 0.97395 0.93181 0.88568 1.45835 1.48731 1.10115 1.31201 1.19876 0.82178 0.82528 0.85478 1.90723 1.35503 1.67570 1.46686 1.22310 1.01081 0.80279 0.95868 0.87928 1.22335 1.03519 1.02188 0.95233 1.86268 1.46095 1.15347 1.71228 1.19117 0.91845 0.88597 0.94915 1.21322 0.96200 1.01529 1.01331 1.21049 0.98684 0.92745 0.98112 1.20930 0.97832 0.95947 1.00419 1.21022 0.95082 0.99519 0.98056 1.17021 0.89508 0.89265 0.99328 1.91521 1.54357 1.89836 1.75232 1.42468 0.98715 1.21253 1.73881 1.19147 0.88765 0.96444 1.32598 0.90947 1.24724 0.96460 0.97670 1.01724 1.69647 1.07007 1.29856 1.51183 0.86348 0.79120 0.82376 0.78800 1.21303 1.21788 1.21252 0.93174 0.93518 0.93023 0.91854 0.89489 0.94970 0.94054 0.91361 0.91703 0.75266 0.90686 0.90734 0.89627 0.83997 0.84892 0.84890 0.84136 0.78096 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.84 37.16 0.33 -1.72 16 2 C -0.11 -1.81 2.69 -90.62 -0.24 -2.05 16 3 C -0.14 -2.42 8.26 37.16 0.31 -2.12 16 4 C 0.17 2.98 2.18 -67.93 -0.15 2.83 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.88 4.73 -4.04 -0.02 1.86 16 7 N -0.71 -11.13 5.35 -60.29 -0.32 -11.45 16 8 C 0.52 8.60 7.18 -10.98 -0.08 8.52 16 9 O -0.53 -10.88 16.51 -14.30 -0.24 -11.11 16 10 C 0.06 0.87 2.64 -27.88 -0.07 0.80 16 11 H 0.10 1.25 6.32 -51.93 -0.33 0.92 16 12 C -0.18 -1.84 9.12 37.16 0.34 -1.50 16 13 O -0.28 -4.35 9.20 -39.44 -0.36 -4.71 16 14 C 0.10 1.37 6.61 -39.17 -0.26 1.11 16 15 C -0.19 -1.98 8.24 -39.44 -0.33 -2.31 16 16 C -0.09 -0.77 10.04 -39.59 -0.40 -1.17 16 17 C -0.13 -1.10 10.04 -39.57 -0.40 -1.50 16 18 C -0.12 -1.15 10.02 -39.54 -0.40 -1.55 16 19 C 0.07 0.90 7.31 -39.30 -0.29 0.61 16 20 F -0.13 -1.97 17.11 2.25 0.04 -1.93 16 21 N -0.72 -15.60 4.44 -53.43 -0.24 -15.84 16 22 C -0.24 -5.76 7.57 -15.06 -0.11 -5.88 16 23 H 0.07 1.72 7.40 -52.49 -0.39 1.33 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 25 N -0.93 -25.75 13.06 55.49 0.72 -25.03 16 26 Si 0.90 20.74 29.55 -169.99 -5.02 15.71 16 27 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 29 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.68 6.54 -51.93 -0.34 0.34 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.81 6.01 -51.93 -0.31 1.49 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.06 6.71 -51.93 -0.35 0.71 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.41 6.28 7.92 -40.82 -0.32 5.96 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.66 6.90 -51.93 -0.36 0.31 16 42 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 43 H 0.14 1.32 5.43 -52.48 -0.28 1.04 16 44 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 46 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.39 9.20 7.80 -40.82 -0.32 8.88 16 48 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 394.02 15.07 5.94 5.94 Total: -1.00 -30.49 394.02 -8.54 -39.02 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -7.20 Total: 13.78 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -1.86 Total: -4.39 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.16 Total: -52.31 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.60 Total: -15.82 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.49 -8.54 -39.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268214568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.388 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds