Wall clock time and date at job start Tue Mar 31 2020 21:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47111 * 2 1 4 4 C 1.52994 * 109.47092 * 119.99825 * 2 1 3 5 5 H 1.08997 * 109.47683 * 300.00095 * 4 2 1 6 6 C 1.52999 * 109.47514 * 60.00059 * 4 2 1 7 7 N 1.46499 * 109.47631 * 174.99474 * 6 4 2 8 8 C 1.34779 * 119.99890 * 179.97438 * 7 6 4 9 9 O 1.21279 * 120.00339 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99640 * 180.02562 * 8 7 6 11 11 H 1.08999 * 109.47269 * 304.99389 * 10 8 7 12 12 C 1.53001 * 109.47551 * 65.00020 * 10 8 7 13 13 O 1.42902 * 109.47187 * 185.00136 * 10 8 7 14 14 C 1.35949 * 117.00444 * 155.13601 * 13 10 8 15 15 C 1.38664 * 120.06185 * 5.41641 * 14 13 10 16 16 C 1.38182 * 119.96651 * 179.72458 * 15 14 13 17 17 C 1.38257 * 120.09999 * 0.55415 * 16 15 14 18 18 C 1.38263 * 120.12094 * 359.72357 * 17 16 15 19 19 C 1.38326 * 120.03309 * 359.97438 * 18 17 16 20 20 F 1.35101 * 120.04998 * 180.02562 * 19 18 17 21 21 N 1.46508 * 109.47329 * 180.02562 * 4 2 1 22 22 C 1.36931 * 119.99937 * 84.99737 * 21 4 2 23 23 H 1.08000 * 120.00173 * 0.02562 * 22 21 4 24 24 C 1.38812 * 119.99859 * 179.72797 * 22 21 4 25 25 N 1.31620 * 120.00032 * 0.27668 * 24 22 21 26 26 Si 1.86803 * 119.99858 * 180.27464 * 24 22 21 27 27 H 1.48497 * 109.46964 * 60.00392 * 26 24 22 28 28 H 1.48503 * 109.46657 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47606 * 300.00321 * 26 24 22 30 30 H 1.09005 * 109.47107 * 299.99942 * 1 2 3 31 31 H 1.08997 * 109.47396 * 60.00122 * 1 2 3 32 32 H 1.08998 * 109.46974 * 180.02562 * 1 2 3 33 33 H 1.08991 * 109.46960 * 239.99942 * 2 1 3 34 34 H 1.09000 * 109.47008 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.46891 * 300.00187 * 3 2 1 36 36 H 1.09005 * 109.47088 * 60.00047 * 3 2 1 37 37 H 1.09000 * 109.46976 * 294.99850 * 6 4 2 38 38 H 1.09006 * 109.46877 * 54.99563 * 6 4 2 39 39 H 0.96995 * 119.99779 * 0.02562 * 7 6 4 40 40 H 1.08994 * 109.47055 * 59.99782 * 12 10 8 41 41 H 1.08995 * 109.47351 * 179.97438 * 12 10 8 42 42 H 1.08999 * 109.46525 * 299.99909 * 12 10 8 43 43 H 1.08003 * 120.00952 * 359.97438 * 15 14 13 44 44 H 1.08005 * 119.94693 * 180.27685 * 16 15 14 45 45 H 1.07998 * 119.93868 * 179.74520 * 17 16 15 46 46 H 1.08001 * 119.98154 * 179.97438 * 18 17 16 47 47 H 0.97000 * 119.99642 * 265.00661 * 21 4 2 48 48 H 0.96997 * 120.00264 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2493 7 7 2.1143 -2.8882 2.3807 8 6 1.8053 -4.1844 2.5827 9 8 1.0441 -4.7513 1.8277 10 6 2.4059 -4.9295 3.7469 11 1 3.4924 -4.8531 3.7057 12 6 1.9011 -4.3213 5.0569 13 8 2.0224 -6.3046 3.6813 14 6 2.8394 -7.2030 4.2925 15 6 3.9236 -6.7624 5.0361 16 6 4.7494 -7.6771 5.6612 17 6 4.5030 -9.0319 5.5369 18 6 3.4264 -9.4758 4.7917 19 6 2.5927 -8.5645 4.1689 20 9 1.5402 -8.9978 3.4410 21 7 3.5051 -0.7207 1.2496 22 6 4.1892 0.3543 1.7510 23 1 3.6488 1.2016 2.1466 24 6 5.5773 0.3523 1.7565 25 7 6.2359 -0.6804 1.2748 26 14 6.5106 1.8155 2.4476 27 1 6.1465 2.0057 3.8746 28 1 7.9707 1.5680 2.3375 29 1 6.1566 3.0361 1.6795 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 0.4437 -2.1650 1.3389 38 1 1.8184 -2.6510 0.3179 39 1 2.7228 -2.4348 2.9848 40 1 0.8146 -4.3978 5.0981 41 1 2.3351 -4.8604 5.8989 42 1 2.1936 -3.2724 5.1069 43 1 4.1202 -5.7045 5.1299 44 1 5.5913 -7.3334 6.2440 45 1 5.1525 -9.7446 6.0232 46 1 3.2362 -10.5346 4.6958 47 1 3.9904 -1.4818 0.8945 48 1 7.2059 -0.6817 1.2783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268214568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:51 Heat of formation + Delta-G solvation = -107.416868 kcal Electronic energy + Delta-G solvation = -29619.573141 eV Core-core repulsion = 25395.804111 eV Total energy + Delta-G solvation = -4223.769030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.85000 -41.69727 -40.44187 -38.88534 -38.25273 -35.43750 -34.91508 -33.28834 -32.09225 -31.65834 -30.61296 -29.47814 -27.47844 -26.17225 -25.32182 -24.10226 -23.50990 -22.93830 -21.48455 -20.69308 -19.67463 -19.26164 -18.50489 -18.02435 -17.33523 -17.21552 -16.98939 -16.81117 -16.46769 -15.96366 -15.77936 -15.53100 -15.44448 -15.40383 -15.02567 -14.89776 -14.40094 -14.17070 -14.02084 -13.84717 -13.48959 -13.42794 -13.29406 -12.95353 -12.90102 -12.78898 -12.71232 -12.64286 -12.48370 -12.27396 -12.19343 -12.02272 -12.00753 -11.75523 -11.44373 -11.27954 -10.96443 -10.76612 -10.11092 -9.94840 -9.26617 -8.94692 -7.85162 -5.12590 0.11328 0.23215 1.42549 1.49727 1.52905 1.54867 1.59434 2.48570 2.59462 2.62020 3.22759 3.44142 3.50449 3.67645 3.77179 3.81278 3.87772 3.92510 3.95013 4.23454 4.29331 4.31357 4.32386 4.42865 4.44760 4.58797 4.64879 4.65523 4.76343 4.92711 4.96005 4.97854 5.05087 5.07139 5.08733 5.15570 5.25206 5.26211 5.30303 5.42087 5.47076 5.62143 5.66068 5.66683 5.77659 6.17708 6.34266 6.47996 7.10303 7.42810 8.12983 8.38841 9.37294 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.002946 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.372625 B = 9503.052697 C =11352.899801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.174 3.826 5 H 0.062 0.938 6 C 0.122 3.878 7 N -0.698 5.698 8 C 0.513 3.487 9 O -0.574 6.574 10 C 0.068 3.932 11 H 0.116 0.884 12 C -0.167 4.167 13 O -0.310 6.310 14 C 0.073 3.927 15 C -0.190 4.190 16 C -0.082 4.082 17 C -0.122 4.122 18 C -0.115 4.115 19 C 0.030 3.970 20 F -0.153 7.153 21 N -0.727 5.727 22 C -0.215 4.215 23 H 0.080 0.920 24 C -0.068 4.068 25 N -0.967 5.967 26 Si 0.957 3.043 27 H -0.276 1.276 28 H -0.305 1.305 29 H -0.286 1.286 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.415 0.585 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.154 0.846 44 H 0.165 0.835 45 H 0.170 0.830 46 H 0.162 0.838 47 H 0.372 0.628 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 -10.800 11.353 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.191 4.191 4 C 0.065 3.935 5 H 0.080 0.920 6 C -0.003 4.003 7 N -0.351 5.351 8 C 0.298 3.702 9 O -0.454 6.454 10 C 0.008 3.992 11 H 0.133 0.867 12 C -0.224 4.224 13 O -0.224 6.224 14 C 0.027 3.973 15 C -0.208 4.208 16 C -0.100 4.100 17 C -0.140 4.140 18 C -0.133 4.133 19 C 0.011 3.989 20 F -0.132 7.132 21 N -0.367 5.367 22 C -0.347 4.347 23 H 0.098 0.902 24 C -0.261 4.261 25 N -0.618 5.618 26 Si 0.788 3.212 27 H -0.203 1.203 28 H -0.232 1.232 29 H -0.213 1.213 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.252 0.748 40 H 0.085 0.915 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.171 0.829 44 H 0.183 0.817 45 H 0.188 0.812 46 H 0.180 0.820 47 H 0.204 0.796 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.404 -11.052 10.773 16.710 hybrid contribution 1.009 0.774 -0.282 1.302 sum -5.395 -10.279 10.491 15.647 Atomic orbital electron populations 1.21858 0.94039 1.01785 1.02240 1.21635 0.95854 0.96895 0.98512 1.21727 1.01687 0.95386 1.00338 1.20672 0.84042 0.91807 0.96936 0.91957 1.21686 0.98139 0.92247 0.88190 1.45784 1.48392 1.10043 1.30845 1.20494 0.81399 0.82492 0.85791 1.90692 1.37681 1.68465 1.48512 1.22353 1.01432 0.79761 0.95607 0.86700 1.22319 1.03034 1.02975 0.94068 1.86205 1.47507 1.16213 1.72462 1.19429 0.93046 0.88395 0.96425 1.21544 0.95592 1.02659 1.01001 1.21504 0.98680 0.92726 0.97122 1.21409 0.97076 0.96591 0.98931 1.21368 0.94635 1.00127 0.97181 1.17581 0.90265 0.90113 1.00959 1.91450 1.55625 1.90062 1.76102 1.42576 1.00405 1.20179 1.73535 1.19425 0.88764 0.96566 1.29965 0.90207 1.25320 0.97534 0.99720 1.03490 1.69794 1.06381 1.31739 1.53866 0.85458 0.77211 0.79919 0.78625 1.20254 1.23192 1.21252 0.91998 0.92192 0.92518 0.93337 0.93156 0.93216 0.93234 0.89923 0.93429 0.74774 0.91491 0.88776 0.88219 0.82892 0.81739 0.81212 0.82019 0.79599 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.84 71.98 0.64 -2.88 16 2 C -0.11 -3.41 2.69 -10.79 -0.03 -3.44 16 3 C -0.13 -4.47 8.26 71.98 0.59 -3.87 16 4 C 0.17 5.94 2.18 44.99 0.10 6.03 16 5 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 6 C 0.12 3.95 4.73 86.38 0.41 4.36 16 7 N -0.70 -21.97 5.35 -463.06 -2.48 -24.45 16 8 C 0.51 17.43 7.18 87.66 0.63 18.06 16 9 O -0.57 -24.51 16.51 15.96 0.26 -24.24 16 10 C 0.07 1.85 2.64 29.85 0.08 1.92 16 11 H 0.12 2.77 6.32 -2.39 -0.02 2.75 16 12 C -0.17 -3.33 9.12 71.98 0.66 -2.67 16 13 O -0.31 -10.10 9.20 -73.99 -0.68 -10.78 16 14 C 0.07 1.98 6.61 22.53 0.15 2.13 16 15 C -0.19 -3.77 8.24 22.36 0.18 -3.59 16 16 C -0.08 -1.19 10.04 22.26 0.22 -0.96 16 17 C -0.12 -1.62 10.04 22.28 0.22 -1.39 16 18 C -0.11 -2.07 10.02 22.30 0.22 -1.85 16 19 C 0.03 0.82 7.31 22.45 0.16 0.98 16 20 F -0.15 -4.92 17.11 44.97 0.77 -4.15 16 21 N -0.73 -31.38 4.44 -322.94 -1.43 -32.81 16 22 C -0.22 -10.29 7.57 84.03 0.64 -9.66 16 23 H 0.08 3.66 7.40 -2.91 -0.02 3.64 16 24 C -0.07 -3.54 5.50 84.86 0.47 -3.07 16 25 N -0.97 -54.53 13.06 21.65 0.28 -54.25 16 26 Si 0.96 42.65 29.55 68.60 2.03 44.67 16 27 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 30 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.36 6.54 -2.39 -0.02 1.35 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 2.05 6.01 -2.39 -0.01 2.04 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.08 2.48 6.71 -2.39 -0.02 2.47 16 38 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.41 12.45 7.92 -92.71 -0.73 11.71 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.51 6.90 -2.39 -0.02 1.49 16 42 H 0.10 1.68 7.92 -2.39 -0.02 1.66 16 43 H 0.15 2.57 5.43 -2.91 -0.02 2.55 16 44 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 45 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 46 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 47 H 0.37 18.09 7.80 -92.71 -0.72 17.37 16 48 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -68.81 394.02 3.63 -65.18 By element: Atomic # 1 Polarization: 41.18 SS G_CDS: -0.47 Total: 40.72 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 5.34 Total: 0.11 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -3.63 Total: -111.51 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.42 Total: -35.03 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.77 Total: -4.15 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -68.81 3.63 -65.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268214568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.237 kcal (2) G-P(sol) polarization free energy of solvation -68.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds